Wall clock time and date at job start Tue Mar 31 2020 18:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46809 * 2 1 4 4 N 1.46499 * 109.46865 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99660 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00294 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99927 * 179.72094 * 5 4 3 8 8 H 1.09001 * 109.46956 * 60.27847 * 7 5 4 9 9 C 1.52992 * 109.47571 * 300.27831 * 7 5 4 10 10 N 1.46503 * 109.47069 * 180.27607 * 7 5 4 11 11 C 1.34780 * 119.99909 * 205.00441 * 10 7 5 12 12 O 1.21284 * 119.99921 * 359.97438 * 11 10 7 13 13 C 1.50703 * 120.00150 * 180.02562 * 11 10 7 14 14 C 1.50695 * 109.46990 * 179.97438 * 13 11 10 15 15 C 1.38305 * 119.92852 * 269.72344 * 14 13 11 16 16 C 1.38106 * 120.06887 * 179.73014 * 15 14 13 17 17 C 1.38881 * 119.92735 * 0.56828 * 16 15 14 18 18 O 1.35749 * 120.06988 * 179.68521 * 17 16 15 19 19 C 1.34829 * 117.00234 * 174.48907 * 18 17 16 20 20 H 1.08000 * 119.99910 * 5.05615 * 19 18 17 21 21 C 1.38653 * 119.99987 * 185.05573 * 19 18 17 22 22 N 1.31557 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47084 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46710 * 120.00379 * 23 21 19 26 26 H 1.48505 * 109.46972 * 240.00055 * 23 21 19 27 27 C 1.38884 * 119.86128 * 359.70828 * 17 16 15 28 28 C 1.38100 * 119.93182 * 359.97438 * 27 17 16 29 29 H 1.08997 * 109.47180 * 299.99658 * 1 2 3 30 30 H 1.08997 * 109.47629 * 59.99967 * 1 2 3 31 31 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47180 * 240.00342 * 2 1 3 33 33 H 1.08997 * 109.47629 * 120.00033 * 2 1 3 34 34 H 1.08997 * 109.46970 * 60.00213 * 3 2 1 35 35 H 1.08997 * 109.47052 * 300.00386 * 3 2 1 36 36 H 0.97001 * 120.00375 * 0.02562 * 4 3 2 37 37 H 1.09001 * 109.46994 * 299.99992 * 9 7 5 38 38 H 1.09002 * 109.46969 * 59.99698 * 9 7 5 39 39 H 1.09001 * 109.47698 * 179.97438 * 9 7 5 40 40 H 0.96993 * 120.00280 * 25.00819 * 10 7 5 41 41 H 1.08999 * 109.46611 * 299.99916 * 13 11 10 42 42 H 1.09001 * 109.46861 * 59.99997 * 13 11 10 43 43 H 1.08001 * 119.96434 * 359.97438 * 15 14 13 44 44 H 1.07995 * 120.03932 * 180.27571 * 16 15 14 45 45 H 0.96999 * 119.99192 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.02973 * 179.97438 * 27 17 16 47 47 H 1.08003 * 119.96531 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1787 2.6099 -0.0002 6 8 3.5722 3.6602 0.0011 7 6 5.6857 2.6099 0.0055 8 1 6.0524 2.0988 -0.8846 9 6 6.1911 1.8850 1.2544 10 7 6.1739 3.9912 0.0115 11 6 7.3977 4.2755 -0.4764 12 8 8.0949 3.3877 -0.9199 13 6 7.9002 5.6963 -0.4698 14 6 9.2841 5.7424 -1.0645 15 6 10.3911 5.5968 -0.2483 16 6 11.6605 5.6330 -0.7910 17 6 11.8251 5.8276 -2.1562 18 8 13.0717 5.8701 -2.6918 19 6 13.1586 5.9471 -4.0351 20 1 12.2629 6.0547 -4.6288 21 6 14.3978 5.8883 -4.6542 22 7 15.4888 5.7567 -3.9309 23 14 14.5180 5.9943 -6.5153 24 1 13.1570 6.1363 -7.0920 25 1 15.3411 7.1716 -6.8918 26 1 15.1516 4.7586 -7.0416 27 6 10.7116 5.9792 -2.9723 28 6 9.4447 5.9355 -2.4244 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 3.9899 0.6026 -0.0013 37 1 5.8243 2.3961 2.1446 38 1 5.8278 0.8573 1.2499 39 1 7.2811 1.8847 1.2583 40 1 5.6165 4.7011 0.3666 41 1 7.2298 6.3214 -1.0595 42 1 7.9332 6.0651 0.5554 43 1 10.2625 5.4506 0.8141 44 1 12.5244 5.5148 -0.1539 45 1 16.3558 5.7159 -4.3641 46 1 10.8364 6.1312 -4.0343 47 1 8.5783 6.0529 -3.0586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647613011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:35 Heat of formation + Delta-G solvation = -89.507175 kcal Electronic energy + Delta-G solvation = -27333.399960 eV Core-core repulsion = 23288.490814 eV Total energy + Delta-G solvation = -4044.909145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64390 -39.47777 -38.67965 -36.57380 -36.28582 -35.01450 -33.25228 -32.44724 -31.67475 -30.36463 -30.07361 -26.91882 -26.63105 -25.16301 -24.21726 -22.22639 -21.90753 -21.25349 -20.45675 -20.09815 -18.02447 -17.91562 -17.04360 -16.86233 -16.39542 -16.23964 -15.71965 -15.28871 -14.99110 -14.57377 -14.42688 -14.19096 -14.13988 -13.70547 -13.57489 -13.48703 -13.27109 -13.19246 -12.75644 -12.70739 -12.64532 -12.60233 -12.45378 -11.98186 -11.75495 -11.71875 -11.46313 -11.43109 -11.22824 -10.81246 -10.70088 -10.54502 -10.37778 -10.24389 -9.73027 -9.58871 -9.26454 -9.22565 -8.77370 -8.08383 -7.10157 -6.39759 -3.98090 2.16517 2.27288 2.31867 2.54989 2.80009 3.15103 3.17486 3.23104 3.28591 4.01475 4.16654 4.29156 4.39719 4.60031 4.66007 4.71487 4.81448 5.03336 5.04751 5.07197 5.14497 5.18130 5.22325 5.32777 5.37002 5.39725 5.44619 5.52658 5.54604 5.63481 5.74374 5.80176 5.81813 5.91367 5.92184 6.26144 6.28225 6.48578 6.76936 6.96491 6.98098 7.11874 7.30362 7.43909 7.47516 7.51799 7.71009 7.90559 8.05951 8.31933 9.06286 9.77349 10.78555 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.001797 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.573435 B =15575.727908 C =16157.599120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.728 5.728 5 C 0.513 3.487 6 O -0.535 6.535 7 C 0.126 3.874 8 H 0.114 0.886 9 C -0.159 4.159 10 N -0.724 5.724 11 C 0.514 3.486 12 O -0.520 6.520 13 C -0.078 4.078 14 C -0.169 4.169 15 C -0.059 4.059 16 C -0.191 4.191 17 C 0.156 3.844 18 O -0.179 6.179 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.232 4.232 28 C -0.056 4.056 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.403 0.597 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.407 0.593 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.072 -9.512 10.178 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.381 5.381 5 C 0.298 3.702 6 O -0.411 6.411 7 C 0.017 3.983 8 H 0.132 0.868 9 C -0.218 4.218 10 N -0.380 5.380 11 C 0.301 3.699 12 O -0.394 6.394 13 C -0.118 4.118 14 C -0.171 4.171 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.083 6.083 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.252 4.252 28 C -0.075 4.075 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.244 0.756 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.078 0.922 46 H 0.144 0.856 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.518 -9.406 9.894 29.826 hybrid contribution -0.103 -0.142 -0.837 0.855 sum -26.621 -9.548 9.057 29.696 Atomic orbital electron populations 1.21678 0.94406 1.02302 1.02409 1.21748 0.97141 0.95659 1.02924 1.21447 0.79137 0.97386 1.02651 1.45957 1.07559 1.08691 1.75888 1.20749 0.89987 0.83879 0.75556 1.90707 1.70085 1.31220 1.49097 1.20680 0.89751 0.86095 1.01814 0.86837 1.22141 1.03570 0.99687 0.96360 1.45888 1.18401 1.08256 1.65476 1.21107 0.80206 0.92184 0.76410 1.90741 1.55671 1.48503 1.44523 1.20392 0.96053 0.92505 1.02871 1.18634 0.92193 1.12342 0.93897 1.20401 0.91511 0.97872 0.97988 1.20152 0.97059 1.10919 0.92942 1.19384 0.85753 0.92087 0.92490 1.83974 1.21789 1.78897 1.23631 1.21379 0.94591 1.51854 0.78805 0.89040 1.25280 0.94223 0.96635 1.00423 1.70054 0.97991 1.46084 1.35756 0.85652 0.78819 0.78199 0.80780 1.19123 1.20185 1.20183 1.21109 0.92127 1.11293 1.00627 1.20517 0.96106 0.97179 0.93659 0.92306 0.92279 0.92065 0.91136 0.91174 0.91305 0.91318 0.76196 0.91837 0.91379 0.90287 0.75616 0.88816 0.88811 0.87366 0.86562 0.92154 0.85604 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.15 0.37 -0.13 16 2 C -0.14 -0.48 6.05 -26.73 -0.16 -0.64 16 3 C 0.12 0.68 5.67 -4.04 -0.02 0.65 16 4 N -0.73 -4.55 5.44 -60.29 -0.33 -4.88 16 5 C 0.51 4.79 7.22 -10.99 -0.08 4.71 16 6 O -0.53 -6.74 15.84 5.55 0.09 -6.65 16 7 C 0.13 1.19 2.98 -69.08 -0.21 0.98 16 8 H 0.11 1.17 7.58 -51.93 -0.39 0.78 16 9 C -0.16 -1.22 9.38 37.15 0.35 -0.87 16 10 N -0.72 -7.92 4.95 -54.93 -0.27 -8.19 16 11 C 0.51 7.21 7.79 -10.98 -0.09 7.13 16 12 O -0.52 -9.51 15.70 5.55 0.09 -9.43 16 13 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 14 C -0.17 -3.02 4.38 -104.58 -0.46 -3.48 16 15 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 16 C -0.19 -4.24 9.99 -39.39 -0.39 -4.64 16 17 C 0.16 3.95 6.65 -39.10 -0.26 3.69 16 18 O -0.18 -5.29 9.76 0.06 0.00 -5.29 16 19 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 20 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 23 Si 0.94 21.04 29.55 -169.99 -5.02 16.01 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 C -0.23 -5.31 9.17 -39.39 -0.36 -5.68 16 28 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 1.52 7.88 -40.82 -0.32 1.20 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.35 7.55 -51.93 -0.39 -0.05 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.41 3.95 7.79 -40.82 -0.32 3.63 16 41 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 42 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 47 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -36.19 399.19 -7.77 -43.96 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.04 Total: 5.91 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.05 Total: -12.38 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.16 Total: -38.15 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.18 Total: -21.37 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.19 -7.77 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647613011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.548 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds