Wall clock time and date at job start Tue Mar 31 2020 18:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46809 * 2 1 4 4 N 1.46499 * 109.46865 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99660 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00294 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99927 * 179.72094 * 5 4 3 8 8 H 1.09001 * 109.46956 * 60.27847 * 7 5 4 9 9 C 1.52992 * 109.47571 * 300.27831 * 7 5 4 10 10 N 1.46503 * 109.47069 * 180.27607 * 7 5 4 11 11 C 1.34780 * 119.99909 * 205.00441 * 10 7 5 12 12 O 1.21284 * 119.99921 * 359.97438 * 11 10 7 13 13 C 1.50703 * 120.00150 * 180.02562 * 11 10 7 14 14 C 1.50695 * 109.46990 * 179.97438 * 13 11 10 15 15 C 1.38305 * 119.92852 * 269.72344 * 14 13 11 16 16 C 1.38106 * 120.06887 * 179.73014 * 15 14 13 17 17 C 1.38881 * 119.92735 * 0.56828 * 16 15 14 18 18 O 1.35749 * 120.06988 * 179.68521 * 17 16 15 19 19 C 1.34829 * 117.00234 * 174.48907 * 18 17 16 20 20 H 1.08000 * 119.99910 * 5.05615 * 19 18 17 21 21 C 1.38653 * 119.99987 * 185.05573 * 19 18 17 22 22 N 1.31557 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47084 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46710 * 120.00379 * 23 21 19 26 26 H 1.48505 * 109.46972 * 240.00055 * 23 21 19 27 27 C 1.38884 * 119.86128 * 359.70828 * 17 16 15 28 28 C 1.38100 * 119.93182 * 359.97438 * 27 17 16 29 29 H 1.08997 * 109.47180 * 299.99658 * 1 2 3 30 30 H 1.08997 * 109.47629 * 59.99967 * 1 2 3 31 31 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47180 * 240.00342 * 2 1 3 33 33 H 1.08997 * 109.47629 * 120.00033 * 2 1 3 34 34 H 1.08997 * 109.46970 * 60.00213 * 3 2 1 35 35 H 1.08997 * 109.47052 * 300.00386 * 3 2 1 36 36 H 0.97001 * 120.00375 * 0.02562 * 4 3 2 37 37 H 1.09001 * 109.46994 * 299.99992 * 9 7 5 38 38 H 1.09002 * 109.46969 * 59.99698 * 9 7 5 39 39 H 1.09001 * 109.47698 * 179.97438 * 9 7 5 40 40 H 0.96993 * 120.00280 * 25.00819 * 10 7 5 41 41 H 1.08999 * 109.46611 * 299.99916 * 13 11 10 42 42 H 1.09001 * 109.46861 * 59.99997 * 13 11 10 43 43 H 1.08001 * 119.96434 * 359.97438 * 15 14 13 44 44 H 1.07995 * 120.03932 * 180.27571 * 16 15 14 45 45 H 0.96999 * 119.99192 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.02973 * 179.97438 * 27 17 16 47 47 H 1.08003 * 119.96531 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1787 2.6099 -0.0002 6 8 3.5722 3.6602 0.0011 7 6 5.6857 2.6099 0.0055 8 1 6.0524 2.0988 -0.8846 9 6 6.1911 1.8850 1.2544 10 7 6.1739 3.9912 0.0115 11 6 7.3977 4.2755 -0.4764 12 8 8.0949 3.3877 -0.9199 13 6 7.9002 5.6963 -0.4698 14 6 9.2841 5.7424 -1.0645 15 6 10.3911 5.5968 -0.2483 16 6 11.6605 5.6330 -0.7910 17 6 11.8251 5.8276 -2.1562 18 8 13.0717 5.8701 -2.6918 19 6 13.1586 5.9471 -4.0351 20 1 12.2629 6.0547 -4.6288 21 6 14.3978 5.8883 -4.6542 22 7 15.4888 5.7567 -3.9309 23 14 14.5180 5.9943 -6.5153 24 1 13.1570 6.1363 -7.0920 25 1 15.3411 7.1716 -6.8918 26 1 15.1516 4.7586 -7.0416 27 6 10.7116 5.9792 -2.9723 28 6 9.4447 5.9355 -2.4244 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 3.9899 0.6026 -0.0013 37 1 5.8243 2.3961 2.1446 38 1 5.8278 0.8573 1.2499 39 1 7.2811 1.8847 1.2583 40 1 5.6165 4.7011 0.3666 41 1 7.2298 6.3214 -1.0595 42 1 7.9332 6.0651 0.5554 43 1 10.2625 5.4506 0.8141 44 1 12.5244 5.5148 -0.1539 45 1 16.3558 5.7159 -4.3641 46 1 10.8364 6.1312 -4.0343 47 1 8.5783 6.0529 -3.0586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647613011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:34 Heat of formation + Delta-G solvation = -115.799780 kcal Electronic energy + Delta-G solvation = -27334.540093 eV Core-core repulsion = 23288.490814 eV Total energy + Delta-G solvation = -4046.049278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.51743 -40.83334 -40.11917 -38.22587 -36.91252 -35.96575 -34.39666 -33.81010 -32.99463 -31.77521 -31.35939 -28.17018 -27.39738 -27.00441 -25.02145 -23.62295 -22.68826 -22.52275 -21.35240 -21.22305 -19.83688 -18.99130 -18.68772 -17.87025 -17.18411 -16.87364 -16.59542 -16.54770 -16.24732 -16.03726 -15.69465 -15.56318 -15.47743 -15.12976 -14.87973 -14.53400 -14.38729 -14.15080 -13.94486 -13.79205 -13.59552 -13.37398 -13.32647 -12.97614 -12.93137 -12.80833 -12.60464 -12.47823 -12.27361 -12.23403 -12.09873 -12.03977 -11.75501 -11.16832 -11.04852 -10.94091 -10.75029 -10.23736 -10.13156 -9.75071 -8.89334 -8.46968 -6.14989 0.62794 0.67537 1.34142 1.42567 1.43171 1.52864 1.66496 1.85364 2.17816 2.41693 2.85797 3.18232 3.53370 3.54855 3.86140 3.91407 4.00029 4.05631 4.07043 4.11585 4.19622 4.23929 4.34978 4.49594 4.60254 4.63959 4.66978 4.72478 4.74912 4.79775 4.82080 4.86125 5.10021 5.15740 5.16262 5.18336 5.24683 5.28771 5.31539 5.37916 5.44954 5.57712 5.72714 5.79358 6.03715 6.23626 6.39216 6.55334 6.97786 7.06520 7.29378 7.79141 8.76679 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.001797 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.573435 B =15575.727908 C =16157.599120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.117 3.883 4 N -0.713 5.713 5 C 0.516 3.484 6 O -0.570 6.570 7 C 0.123 3.877 8 H 0.106 0.894 9 C -0.152 4.152 10 N -0.711 5.711 11 C 0.518 3.482 12 O -0.571 6.571 13 C -0.078 4.078 14 C -0.145 4.145 15 C -0.056 4.056 16 C -0.205 4.205 17 C 0.112 3.888 18 O -0.234 6.234 19 C -0.414 4.414 20 H 0.099 0.901 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.253 1.253 25 H -0.266 1.266 26 H -0.268 1.268 27 C -0.244 4.244 28 C -0.061 4.061 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.417 0.583 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.416 0.584 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.113 0.887 45 H 0.272 0.728 46 H 0.116 0.884 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.666 -10.171 10.927 34.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.007 4.007 4 N -0.365 5.365 5 C 0.301 3.699 6 O -0.449 6.449 7 C 0.015 3.985 8 H 0.123 0.877 9 C -0.211 4.211 10 N -0.366 5.366 11 C 0.306 3.694 12 O -0.449 6.449 13 C -0.117 4.117 14 C -0.146 4.146 15 C -0.073 4.073 16 C -0.224 4.224 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.839 3.161 24 H -0.177 1.177 25 H -0.190 1.190 26 H -0.193 1.193 27 C -0.263 4.263 28 C -0.079 4.079 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.254 0.746 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.254 0.746 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.166 0.834 44 H 0.131 0.869 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -30.206 -10.092 10.695 33.595 hybrid contribution 0.650 0.006 -0.820 1.046 sum -29.557 -10.086 9.875 32.754 Atomic orbital electron populations 1.21694 0.94287 1.02744 1.02217 1.21701 0.97137 0.94038 1.03763 1.21505 0.78550 0.98845 1.01774 1.45882 1.07937 1.08509 1.74197 1.20680 0.89763 0.84127 0.75306 1.90696 1.70591 1.32532 1.51130 1.20793 0.89949 0.85330 1.02455 0.87674 1.22097 1.02191 1.01283 0.95517 1.45750 1.17436 1.09357 1.64043 1.21113 0.80599 0.91891 0.75837 1.90749 1.57180 1.49863 1.47076 1.20513 0.93186 0.92714 1.05335 1.19220 0.94678 1.07507 0.93175 1.20878 0.90165 0.96100 1.00198 1.20446 0.98874 1.11139 0.91945 1.19940 0.85464 0.94304 0.94075 1.83934 1.24145 1.81983 1.24009 1.21857 0.95436 1.52443 0.79274 0.88322 1.26595 0.93403 0.95888 1.06173 1.70195 0.98748 1.48668 1.38295 0.84522 0.79475 0.78634 0.73492 1.17659 1.19042 1.19342 1.21215 0.93118 1.11791 1.00188 1.20917 0.95556 0.96297 0.95118 0.92349 0.92703 0.91291 0.90559 0.90018 0.91873 0.92581 0.74556 0.91147 0.88567 0.92256 0.74557 0.85824 0.85018 0.83364 0.86854 0.91848 0.86583 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 71.98 0.71 -0.02 16 2 C -0.13 -0.59 6.05 30.60 0.19 -0.41 16 3 C 0.12 1.13 5.67 86.38 0.49 1.62 16 4 N -0.71 -7.19 5.44 -463.05 -2.52 -9.71 16 5 C 0.52 8.49 7.22 87.66 0.63 9.13 16 6 O -0.57 -13.31 15.84 -3.05 -0.05 -13.35 16 7 C 0.12 2.05 2.98 44.24 0.13 2.18 16 8 H 0.11 1.99 7.58 -2.39 -0.02 1.97 16 9 C -0.15 -1.94 9.38 71.98 0.68 -1.26 16 10 N -0.71 -13.43 4.95 -446.09 -2.21 -15.64 16 11 C 0.52 12.89 7.79 87.66 0.68 13.58 16 12 O -0.57 -19.80 15.70 -3.04 -0.05 -19.85 16 13 C -0.08 -1.68 5.83 29.10 0.17 -1.51 16 14 C -0.14 -4.73 4.38 -19.84 -0.09 -4.82 16 15 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 16 C -0.20 -9.27 9.99 22.39 0.22 -9.05 16 17 C 0.11 5.94 6.65 22.58 0.15 6.09 16 18 O -0.23 -14.76 9.76 -22.72 -0.22 -14.98 16 19 C -0.41 -25.17 9.49 67.92 0.64 -24.53 16 20 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 21 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 22 N -0.92 -58.06 13.67 21.61 0.30 -57.77 16 23 Si 1.02 44.40 29.55 68.60 2.03 46.42 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 C -0.24 -11.41 9.17 22.39 0.21 -11.21 16 28 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.08 0.29 8.14 -2.39 -0.02 0.28 16 33 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.42 1.90 7.88 -92.71 -0.73 1.17 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.66 7.55 -2.39 -0.02 0.64 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.42 6.63 7.79 -92.71 -0.72 5.91 16 41 H 0.12 2.05 8.08 -2.39 -0.02 2.03 16 42 H 0.13 1.95 8.08 -2.39 -0.02 1.93 16 43 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 44 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 45 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 46 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 47 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -85.41 399.19 2.54 -82.88 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.45 Total: 26.91 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 5.72 Total: -24.91 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -4.43 Total: -83.12 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.32 Total: -48.18 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -85.41 2.54 -82.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647613011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.921 kcal (2) G-P(sol) polarization free energy of solvation -85.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds