Wall clock time and date at job start Tue Mar 31 2020 18:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 N 1.46500 * 109.47128 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00119 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00304 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.52996 * 109.47144 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46849 * 179.97438 * 8 7 5 10 10 O 1.21274 * 120.00375 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99813 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00093 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.96230 * 269.98024 * 13 12 11 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99825 * 13 12 11 28 28 H 1.08998 * 109.47167 * 300.00021 * 1 2 3 29 29 H 1.09003 * 109.47125 * 59.99737 * 1 2 3 30 30 H 1.09001 * 109.47412 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46489 * 240.00201 * 2 1 3 32 32 H 1.08998 * 109.47133 * 120.00733 * 2 1 3 33 33 H 1.09007 * 109.47155 * 60.00137 * 3 2 1 34 34 H 1.08998 * 109.47635 * 300.00426 * 3 2 1 35 35 H 0.97009 * 119.99766 * 0.02562 * 4 3 2 36 36 H 1.09002 * 109.46571 * 59.99894 * 7 5 4 37 37 H 1.08998 * 109.47190 * 300.00341 * 7 5 4 38 38 H 1.09008 * 109.46644 * 60.00215 * 8 7 5 39 39 H 1.08998 * 109.47635 * 300.00411 * 8 7 5 40 40 H 0.97004 * 119.99718 * 0.02562 * 11 9 8 41 41 H 1.09002 * 109.46490 * 60.00223 * 12 11 9 42 42 H 1.08992 * 109.46880 * 300.00477 * 12 11 9 43 43 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1790 2.6096 0.0012 6 8 3.5726 3.6600 0.0018 7 6 5.6860 2.6095 0.0013 8 6 6.1960 4.0520 0.0014 9 6 7.7030 4.0519 0.0021 10 8 8.3094 3.0016 0.0020 11 7 8.3770 5.2191 0.0029 12 6 9.8420 5.2190 0.0030 13 6 10.3444 6.6398 0.0045 14 6 10.5752 7.2923 -1.1932 15 6 11.0366 8.5958 -1.1960 16 6 11.2624 9.2525 -0.0021 17 6 11.0371 8.5984 1.2019 18 8 11.2638 9.2392 2.3769 19 6 11.8207 10.4652 2.3081 20 1 11.9905 10.9279 1.3472 21 6 12.1754 11.1317 3.4710 22 7 11.9690 10.5678 4.6415 23 14 12.9477 12.8299 3.3756 24 1 12.0108 13.7625 2.6992 25 1 13.2324 13.3221 4.7475 26 1 14.2146 12.7550 2.6044 27 6 10.5742 7.2888 1.2013 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9900 0.6023 0.0006 36 1 6.0493 2.0961 -0.8890 37 1 6.0493 2.0952 0.8910 38 1 5.8326 4.5657 0.8915 39 1 5.8327 4.5660 -0.8884 40 1 7.8920 6.0592 0.0033 41 1 10.2053 4.7057 -0.8874 42 1 10.2052 4.7046 0.8926 43 1 10.3945 6.7825 -2.1281 44 1 11.2163 9.1024 -2.1327 45 1 11.6179 10.2723 -0.0049 46 1 12.2175 11.0340 5.4550 47 1 10.3945 6.7786 2.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649700916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:50 Heat of formation + Delta-G solvation = -99.564007 kcal Electronic energy + Delta-G solvation = -26585.839686 eV Core-core repulsion = 22540.494444 eV Total energy + Delta-G solvation = -4045.345242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.26638 -39.56357 -38.97326 -36.83699 -36.23526 -34.53049 -33.31315 -32.73519 -32.33830 -30.79426 -29.17195 -27.54653 -26.13535 -25.29205 -24.18297 -22.12855 -21.72511 -20.88047 -20.71646 -20.12962 -18.04911 -17.59702 -17.08758 -16.50685 -16.48062 -16.20961 -15.86239 -15.64814 -15.23173 -14.94495 -14.52943 -14.43753 -14.18583 -13.70617 -13.66862 -13.45735 -13.33623 -13.20084 -12.81545 -12.60461 -12.58195 -12.44257 -12.18050 -12.11115 -11.68395 -11.65692 -11.43145 -11.38368 -11.37280 -10.93629 -10.83815 -10.71852 -10.49947 -10.14546 -9.91386 -9.45683 -9.42251 -8.99787 -8.89166 -8.25201 -7.33840 -6.49402 -4.09120 1.89086 2.26036 2.35800 2.64765 2.75945 3.10388 3.11385 3.14558 3.44364 3.92427 4.29173 4.38121 4.44575 4.50178 4.66228 4.77322 4.84495 4.88901 5.00251 5.06833 5.10305 5.12099 5.26154 5.28433 5.39374 5.49685 5.53058 5.58008 5.61253 5.68796 5.70760 5.73493 5.83449 5.91072 6.05773 6.06846 6.24287 6.47157 6.54662 6.80742 6.98440 7.10920 7.17434 7.26276 7.34725 7.55238 7.70645 7.89731 7.94433 8.22666 8.95750 9.64090 10.68198 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.001594 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.195406 B =17563.875789 C =18329.741557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.735 5.735 5 C 0.513 3.487 6 O -0.540 6.540 7 C -0.123 4.123 8 C -0.126 4.126 9 C 0.512 3.488 10 O -0.551 6.551 11 N -0.720 5.720 12 C 0.168 3.832 13 C -0.074 4.074 14 C -0.195 4.195 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.150 3.850 18 O -0.176 6.176 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.041 3.959 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.171 4.171 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.402 0.598 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.405 0.595 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.128 0.872 46 H 0.271 0.729 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.273 -17.796 -10.619 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.388 5.388 5 C 0.300 3.700 6 O -0.417 6.417 7 C -0.164 4.164 8 C -0.166 4.166 9 C 0.299 3.701 10 O -0.430 6.430 11 N -0.371 5.371 12 C 0.045 3.955 13 C -0.075 4.075 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.245 4.245 17 C 0.096 3.904 18 O -0.079 6.079 19 C -0.470 4.470 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.190 4.190 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.236 0.764 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.240 0.760 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.145 0.855 46 H 0.081 0.919 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.276 -17.781 -10.109 26.139 hybrid contribution 0.461 0.972 -0.080 1.079 sum -15.814 -16.809 -10.189 25.228 Atomic orbital electron populations 1.21682 0.94501 1.02216 1.02414 1.21740 0.97069 0.95813 1.02793 1.21411 0.79620 0.97158 1.02527 1.46040 1.07396 1.08923 1.76396 1.20800 0.90379 0.83494 0.75364 1.90726 1.70669 1.31222 1.49072 1.21359 0.90623 0.98424 1.05969 1.21368 0.91609 0.97590 1.06081 1.20615 0.89946 0.83727 0.75858 1.90685 1.70639 1.31281 1.50370 1.46153 1.07514 1.08785 1.74605 1.20153 0.79072 0.93802 1.02484 1.19272 1.00889 0.94211 0.93105 1.20476 1.08809 0.95897 0.96298 1.20744 0.97421 0.94328 0.96915 1.21240 1.09493 1.01694 0.92091 1.19325 0.93003 0.91384 0.86648 1.83980 1.69013 1.30263 1.24684 1.21278 1.40320 0.90730 0.94716 0.89086 1.25290 0.96980 0.99961 0.94166 1.70023 1.43950 1.38032 0.97509 0.85780 0.79445 0.80249 0.77962 1.19471 1.20235 1.19468 1.20083 1.08219 0.93285 0.97459 0.92284 0.92322 0.92141 0.91272 0.91234 0.91448 0.91482 0.76376 0.88037 0.87952 0.87967 0.88095 0.76012 0.90956 0.90854 0.87514 0.87279 0.85466 0.91891 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.20 16 2 C -0.14 -0.54 6.05 -26.73 -0.16 -0.70 16 3 C 0.12 0.75 5.67 -4.04 -0.02 0.72 16 4 N -0.73 -4.91 5.56 -60.29 -0.33 -5.25 16 5 C 0.51 4.89 7.83 -10.98 -0.09 4.80 16 6 O -0.54 -7.22 15.98 5.56 0.09 -7.13 16 7 C -0.12 -1.05 4.99 -27.88 -0.14 -1.19 16 8 C -0.13 -1.24 4.99 -27.88 -0.14 -1.38 16 9 C 0.51 6.44 7.83 -10.98 -0.09 6.35 16 10 O -0.55 -8.53 15.98 5.56 0.09 -8.44 16 11 N -0.72 -9.14 5.55 -61.47 -0.34 -9.48 16 12 C 0.17 2.41 5.80 -5.19 -0.03 2.38 16 13 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 14 C -0.20 -3.17 9.70 -39.53 -0.38 -3.56 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 16 C -0.23 -4.71 9.17 -39.40 -0.36 -5.07 16 17 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 18 O -0.18 -4.92 9.76 0.05 0.00 -4.92 16 19 C -0.39 -10.81 9.49 30.89 0.29 -10.51 16 20 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 23 Si 0.94 20.18 29.55 -169.99 -5.02 15.15 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 C -0.17 -3.44 9.65 -39.39 -0.38 -3.82 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.40 1.62 8.47 -40.82 -0.35 1.28 16 36 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.10 1.00 8.10 -51.92 -0.42 0.58 16 39 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.41 4.67 8.46 -40.82 -0.35 4.32 16 41 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 42 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 43 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 46 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 401.69 15.07 6.05 6.05 Total: -1.00 -33.80 401.69 -8.29 -42.09 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.15 Total: 7.50 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.43 Total: -11.43 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.08 Total: -38.88 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.18 Total: -20.49 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.80 -8.29 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649700916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.478 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds