Wall clock time and date at job start Tue Mar 31 2020 18:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 N 1.46500 * 109.47128 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00119 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00304 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.52996 * 109.47144 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46849 * 179.97438 * 8 7 5 10 10 O 1.21274 * 120.00375 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99813 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00093 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.96230 * 269.98024 * 13 12 11 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99825 * 13 12 11 28 28 H 1.08998 * 109.47167 * 300.00021 * 1 2 3 29 29 H 1.09003 * 109.47125 * 59.99737 * 1 2 3 30 30 H 1.09001 * 109.47412 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46489 * 240.00201 * 2 1 3 32 32 H 1.08998 * 109.47133 * 120.00733 * 2 1 3 33 33 H 1.09007 * 109.47155 * 60.00137 * 3 2 1 34 34 H 1.08998 * 109.47635 * 300.00426 * 3 2 1 35 35 H 0.97009 * 119.99766 * 0.02562 * 4 3 2 36 36 H 1.09002 * 109.46571 * 59.99894 * 7 5 4 37 37 H 1.08998 * 109.47190 * 300.00341 * 7 5 4 38 38 H 1.09008 * 109.46644 * 60.00215 * 8 7 5 39 39 H 1.08998 * 109.47635 * 300.00411 * 8 7 5 40 40 H 0.97004 * 119.99718 * 0.02562 * 11 9 8 41 41 H 1.09002 * 109.46490 * 60.00223 * 12 11 9 42 42 H 1.08992 * 109.46880 * 300.00477 * 12 11 9 43 43 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1790 2.6096 0.0012 6 8 3.5726 3.6600 0.0018 7 6 5.6860 2.6095 0.0013 8 6 6.1960 4.0520 0.0014 9 6 7.7030 4.0519 0.0021 10 8 8.3094 3.0016 0.0020 11 7 8.3770 5.2191 0.0029 12 6 9.8420 5.2190 0.0030 13 6 10.3444 6.6398 0.0045 14 6 10.5752 7.2923 -1.1932 15 6 11.0366 8.5958 -1.1960 16 6 11.2624 9.2525 -0.0021 17 6 11.0371 8.5984 1.2019 18 8 11.2638 9.2392 2.3769 19 6 11.8207 10.4652 2.3081 20 1 11.9905 10.9279 1.3472 21 6 12.1754 11.1317 3.4710 22 7 11.9690 10.5678 4.6415 23 14 12.9477 12.8299 3.3756 24 1 12.0108 13.7625 2.6992 25 1 13.2324 13.3221 4.7475 26 1 14.2146 12.7550 2.6044 27 6 10.5742 7.2888 1.2013 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9900 0.6023 0.0006 36 1 6.0493 2.0961 -0.8890 37 1 6.0493 2.0952 0.8910 38 1 5.8326 4.5657 0.8915 39 1 5.8327 4.5660 -0.8884 40 1 7.8920 6.0592 0.0033 41 1 10.2053 4.7057 -0.8874 42 1 10.2052 4.7046 0.8926 43 1 10.3945 6.7825 -2.1281 44 1 11.2163 9.1024 -2.1327 45 1 11.6179 10.2723 -0.0049 46 1 12.2175 11.0340 5.4550 47 1 10.3945 6.7786 2.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649700916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:50 Heat of formation + Delta-G solvation = -123.279819 kcal Electronic energy + Delta-G solvation = -26586.868081 eV Core-core repulsion = 22540.494444 eV Total energy + Delta-G solvation = -4046.373637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20095 -40.81758 -40.27953 -38.46711 -36.81395 -35.76718 -34.29029 -34.07029 -33.34122 -32.15567 -30.77462 -28.37880 -27.47254 -26.80561 -25.10387 -23.26489 -22.56978 -22.42479 -21.61124 -20.99871 -19.61392 -18.93684 -18.49579 -17.26605 -17.24891 -17.11124 -16.82866 -16.70553 -16.56415 -16.28516 -16.08380 -15.59961 -15.50678 -15.12138 -14.89684 -14.41179 -14.21988 -14.15827 -13.93678 -13.81034 -13.64110 -13.39322 -13.16981 -13.13798 -13.00307 -12.81359 -12.51834 -12.38114 -12.27393 -12.15900 -12.14222 -12.03294 -11.75352 -11.22598 -11.01435 -10.94317 -10.79511 -10.11991 -10.08982 -9.75375 -9.03515 -8.46914 -6.15753 0.38651 0.70562 1.35669 1.45947 1.51734 1.61469 1.63209 2.03780 2.17697 2.45540 2.86869 3.16235 3.40481 3.59490 3.81979 3.91244 4.01146 4.06751 4.09152 4.14087 4.15847 4.31148 4.35966 4.42501 4.52984 4.64493 4.66404 4.71040 4.74652 4.76677 4.87322 4.87841 4.97452 5.02046 5.11399 5.15395 5.24419 5.25763 5.34206 5.39005 5.49612 5.62255 5.70491 5.71722 6.01291 6.16767 6.50941 6.55111 6.97672 7.19704 7.24331 7.77729 8.75848 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.001594 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.195406 B =17563.875789 C =18329.741557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.721 5.721 5 C 0.513 3.487 6 O -0.584 6.584 7 C -0.117 4.117 8 C -0.120 4.120 9 C 0.516 3.484 10 O -0.578 6.578 11 N -0.717 5.717 12 C 0.174 3.826 13 C -0.060 4.060 14 C -0.169 4.169 15 C -0.070 4.070 16 C -0.235 4.235 17 C 0.111 3.889 18 O -0.233 6.233 19 C -0.415 4.415 20 H 0.103 0.897 21 C -0.022 4.022 22 N -0.920 5.920 23 Si 1.018 2.982 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.257 1.257 27 C -0.181 4.181 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.417 0.583 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.412 0.588 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.120 0.880 46 H 0.272 0.728 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.705 -18.978 -13.750 28.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.009 4.009 4 N -0.374 5.374 5 C 0.300 3.700 6 O -0.464 6.464 7 C -0.157 4.157 8 C -0.160 4.160 9 C 0.305 3.695 10 O -0.459 6.459 11 N -0.369 5.369 12 C 0.050 3.950 13 C -0.061 4.061 14 C -0.187 4.187 15 C -0.088 4.088 16 C -0.255 4.255 17 C 0.061 3.939 18 O -0.140 6.140 19 C -0.491 4.491 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.558 5.558 23 Si 0.837 3.163 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.182 1.182 27 C -0.201 4.201 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.254 0.746 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.248 0.752 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.167 0.833 44 H 0.166 0.834 45 H 0.138 0.862 46 H 0.081 0.919 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.730 -19.027 -13.299 28.614 hybrid contribution 0.474 1.056 0.632 1.319 sum -16.256 -17.970 -12.667 27.343 Atomic orbital electron populations 1.21701 0.94361 1.02747 1.02152 1.21687 0.97088 0.94034 1.03687 1.21453 0.79316 0.98714 1.01396 1.45972 1.07679 1.08927 1.74795 1.20964 0.90746 0.83501 0.74773 1.90711 1.71478 1.32813 1.51407 1.21321 0.89802 0.97703 1.06868 1.21337 0.89387 0.98750 1.06517 1.20981 0.90814 0.82990 0.74764 1.90677 1.71381 1.32166 1.51639 1.46086 1.06798 1.09397 1.74576 1.20044 0.80131 0.91876 1.02908 1.19491 0.99384 0.95105 0.92107 1.21009 1.05035 0.95214 0.97479 1.21168 0.95881 0.94759 0.96976 1.21376 1.09749 1.01700 0.92634 1.19874 0.94679 0.92685 0.86663 1.83944 1.71746 1.31119 1.27173 1.21788 1.40525 0.91172 0.95574 0.87943 1.26576 0.97411 1.04487 0.93480 1.70177 1.46850 1.40394 0.98407 0.84662 0.78831 0.74569 0.78263 1.18075 1.19798 1.18156 1.20229 1.08639 0.92569 0.98697 0.92691 0.92531 0.91178 0.90213 0.90418 0.92791 0.92509 0.74607 0.86783 0.87341 0.88001 0.87158 0.75223 0.89282 0.91819 0.83318 0.83351 0.86195 0.91889 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 71.98 0.71 -0.24 16 2 C -0.13 -0.79 6.05 30.59 0.19 -0.61 16 3 C 0.11 1.38 5.67 86.38 0.49 1.87 16 4 N -0.72 -8.57 5.56 -463.06 -2.57 -11.15 16 5 C 0.51 9.17 7.83 87.66 0.69 9.85 16 6 O -0.58 -15.38 15.98 -3.04 -0.05 -15.43 16 7 C -0.12 -1.77 4.99 29.85 0.15 -1.62 16 8 C -0.12 -2.15 4.99 29.85 0.15 -2.01 16 9 C 0.52 11.95 7.83 87.66 0.69 12.63 16 10 O -0.58 -16.73 15.98 -3.01 -0.05 -16.78 16 11 N -0.72 -16.65 5.55 -466.79 -2.59 -19.24 16 12 C 0.17 4.58 5.80 85.63 0.50 5.08 16 13 C -0.06 -1.89 5.25 -19.88 -0.10 -2.00 16 14 C -0.17 -4.74 9.70 22.30 0.22 -4.53 16 15 C -0.07 -2.19 10.04 22.25 0.22 -1.97 16 16 C -0.24 -9.72 9.17 22.39 0.21 -9.51 16 17 C 0.11 5.37 6.65 22.58 0.15 5.52 16 18 O -0.23 -13.86 9.76 -22.74 -0.22 -14.08 16 19 C -0.41 -23.82 9.49 67.92 0.64 -23.17 16 20 H 0.10 5.35 5.21 -2.91 -0.02 5.33 16 21 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 22 N -0.92 -56.30 13.67 21.61 0.30 -56.00 16 23 Si 1.02 42.37 29.55 68.60 2.03 44.40 16 24 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 27 C -0.18 -7.43 9.65 22.39 0.22 -7.22 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.42 2.44 8.47 -92.70 -0.79 1.65 16 36 H 0.11 1.47 8.10 -2.39 -0.02 1.45 16 37 H 0.11 1.54 8.10 -2.39 -0.02 1.52 16 38 H 0.10 1.89 8.10 -2.38 -0.02 1.87 16 39 H 0.11 1.82 8.10 -2.39 -0.02 1.80 16 40 H 0.41 8.61 8.46 -92.71 -0.78 7.83 16 41 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 42 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 43 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 44 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 45 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 46 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -78.35 401.69 1.84 -76.51 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.57 Total: 30.46 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 5.57 Total: -18.70 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -4.87 Total: -86.39 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.32 Total: -46.29 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -78.35 1.84 -76.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649700916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.766 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds