Wall clock time and date at job start Tue Mar 31 2020 18:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47430 * 2 1 4 4 H 1.09002 * 109.46425 * 305.00221 * 3 2 1 5 5 C 1.52993 * 109.47186 * 185.00180 * 3 2 1 6 6 O 1.42895 * 109.47085 * 64.99524 * 3 2 1 7 7 C 1.35897 * 117.00272 * 204.37180 * 6 3 2 8 8 C 1.38809 * 120.01882 * 354.60156 * 7 6 3 9 9 C 1.38172 * 120.08202 * 179.73992 * 8 7 6 10 10 C 1.38165 * 120.12170 * 0.25639 * 9 8 7 11 11 C 1.38884 * 120.04476 * 0.02562 * 10 9 8 12 12 N 1.39940 * 120.04076 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00441 * 36.91236 * 12 11 10 14 14 O 1.21588 * 119.99810 * 355.54662 * 13 12 11 15 15 N 1.34778 * 120.00362 * 175.54171 * 13 12 11 16 16 C 1.47073 * 136.05210 * 359.63761 * 15 13 12 17 17 C 1.53245 * 88.07735 * 207.19932 * 16 15 13 18 18 O 1.42896 * 114.02096 * 87.71535 * 17 16 15 19 19 C 1.50704 * 114.32183 * 220.47097 * 17 16 15 20 20 H 1.07997 * 119.99936 * 93.75849 * 19 17 16 21 21 C 1.37880 * 119.99820 * 273.75700 * 19 17 16 22 22 N 1.31516 * 119.99948 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99841 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47044 * 90.00333 * 23 21 19 25 25 H 1.48505 * 109.46842 * 209.99698 * 23 21 19 26 26 H 1.48491 * 109.47164 * 329.99989 * 23 21 19 27 27 C 1.47061 * 136.06256 * 180.02562 * 15 13 12 28 28 C 1.38583 * 120.02160 * 174.87150 * 7 6 3 29 29 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46798 * 300.00174 * 1 2 3 31 31 H 1.09002 * 109.46906 * 59.99592 * 1 2 3 32 32 H 1.09003 * 109.47282 * 240.00030 * 2 1 3 33 33 H 1.09003 * 109.47399 * 120.00221 * 2 1 3 34 34 H 1.08999 * 109.47679 * 299.99886 * 5 3 2 35 35 H 1.09002 * 109.47194 * 59.99984 * 5 3 2 36 36 H 1.09004 * 109.46954 * 179.97438 * 5 3 2 37 37 H 1.07994 * 119.96065 * 0.02562 * 8 7 6 38 38 H 1.07997 * 119.93523 * 180.23155 * 9 8 7 39 39 H 1.08000 * 119.97831 * 180.02562 * 10 9 8 40 40 H 0.97002 * 119.99671 * 216.91563 * 12 11 10 41 41 H 1.08999 * 113.46767 * 321.92559 * 16 15 13 42 42 H 1.08990 * 113.46935 * 92.37196 * 16 15 13 43 43 H 0.96702 * 114.00020 * 86.38569 * 18 17 16 44 44 H 0.97000 * 119.99902 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.46561 * 267.63234 * 27 15 13 46 46 H 1.08997 * 113.46718 * 38.06250 * 27 15 13 47 47 H 1.08000 * 120.06245 * 0.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6620 2.0814 1.2210 7 6 1.5650 3.4368 1.2038 8 6 1.9361 4.1453 0.0693 9 6 1.8330 5.5230 0.0485 10 6 1.3653 6.2001 1.1583 11 6 0.9980 5.4969 2.2983 12 7 0.5248 6.1828 3.4225 13 6 -0.2557 7.2707 3.2691 14 8 -0.4824 7.7042 2.1559 15 7 -0.7850 7.8782 4.3495 16 6 -0.7550 7.6659 5.8045 17 6 -2.1223 8.3536 5.8811 18 8 -3.2296 7.4682 5.7024 19 6 -2.2837 9.2852 7.0547 20 1 -2.0723 10.3382 6.9413 21 6 -2.7013 8.7931 8.2731 22 7 -2.9592 7.5109 8.4109 23 14 -2.9020 9.9479 9.7276 24 1 -4.2876 10.4815 9.7484 25 1 -2.6378 9.2075 10.9875 26 1 -1.9402 11.0724 9.6032 27 6 -1.6522 9.0409 4.5919 28 6 1.1008 4.1129 2.3209 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9996 0.9053 0.7160 35 1 3.8532 0.9569 -1.0572 36 1 3.9282 2.4720 -0.1262 37 1 2.3016 3.6187 -0.7999 38 1 2.1188 6.0715 -0.8368 39 1 1.2852 7.2770 1.1394 40 1 0.7586 5.8752 4.3122 41 1 -0.7830 6.6145 6.0904 42 1 0.0380 8.2191 6.3076 43 1 -3.5234 7.0367 6.5164 44 1 -3.2526 7.1646 9.2682 45 1 -1.1008 9.9644 4.7684 46 1 -2.4414 9.1562 3.8490 47 1 0.8161 3.5637 3.2062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649891523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:45 Heat of formation + Delta-G solvation = -51.856481 kcal Electronic energy + Delta-G solvation = -28421.050065 eV Core-core repulsion = 24377.773576 eV Total energy + Delta-G solvation = -4043.276489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61389 -39.89245 -38.51503 -37.10992 -34.58492 -34.08961 -33.95644 -32.22279 -30.73220 -29.88213 -29.54933 -27.96581 -25.35571 -25.14878 -24.30180 -22.88920 -22.59975 -21.10251 -20.22096 -19.05567 -18.43006 -17.77488 -16.97496 -16.26876 -16.23411 -15.70156 -15.44974 -15.23823 -14.97480 -14.77994 -14.31230 -14.11969 -13.98898 -13.67418 -13.49255 -13.37367 -13.22456 -12.90819 -12.68387 -12.47045 -12.12741 -12.06614 -12.00637 -11.68013 -11.58780 -11.37480 -11.30129 -11.10503 -11.03394 -10.91910 -10.74290 -10.51047 -10.29821 -10.06585 -9.77771 -9.32320 -8.81574 -8.50278 -8.36577 -8.03449 -7.71483 -6.43864 -4.54317 1.35342 1.56187 2.73504 3.12813 3.19845 3.21622 3.24382 3.53099 3.96173 4.14051 4.30859 4.36501 4.57682 4.69907 4.80429 4.87480 4.97216 5.05988 5.15464 5.25525 5.28527 5.41197 5.46404 5.55055 5.56083 5.58888 5.64390 5.75857 5.81071 5.85911 5.89946 6.02736 6.07520 6.27895 6.33409 6.39078 6.39867 6.46881 6.58946 6.62606 6.64178 7.04511 7.07721 7.43361 7.54977 7.60347 7.76981 8.49036 8.56096 8.97507 9.17464 9.46334 10.62887 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.002240 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.040792 B =12495.461884 C =13240.912733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.081 3.919 4 H 0.074 0.926 5 C -0.181 4.181 6 O -0.308 6.308 7 C 0.148 3.852 8 C -0.234 4.234 9 C -0.064 4.064 10 C -0.156 4.156 11 C 0.217 3.783 12 N -0.687 5.687 13 C 0.730 3.270 14 O -0.590 6.590 15 N -0.651 5.651 16 C 0.070 3.930 17 C 0.241 3.759 18 O -0.571 6.571 19 C -0.533 4.533 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.910 3.090 24 H -0.276 1.276 25 H -0.284 1.284 26 H -0.271 1.271 27 C 0.129 3.871 28 C -0.186 4.186 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.140 0.860 40 H 0.407 0.593 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.394 0.606 44 H 0.274 0.726 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.514 -11.783 -12.568 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.025 3.975 4 H 0.092 0.908 5 C -0.239 4.239 6 O -0.222 6.222 7 C 0.103 3.897 8 C -0.253 4.253 9 C -0.083 4.083 10 C -0.177 4.177 11 C 0.121 3.879 12 N -0.334 5.334 13 C 0.434 3.566 14 O -0.469 6.469 15 N -0.388 5.388 16 C -0.053 4.053 17 C 0.199 3.801 18 O -0.384 6.384 19 C -0.571 4.571 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.538 5.538 23 Si 0.737 3.263 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.195 1.195 27 C 0.006 3.994 28 C -0.208 4.208 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.158 0.842 40 H 0.242 0.758 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.250 0.750 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.334 -11.602 -13.804 21.298 hybrid contribution 0.135 0.125 1.682 1.692 sum 11.468 -11.476 -12.123 20.253 Atomic orbital electron populations 1.21770 0.95011 1.01847 1.02636 1.21628 0.96966 0.93916 1.03040 1.22478 0.94909 0.93889 0.86259 0.90811 1.22393 0.95376 1.03289 1.02798 1.86088 1.83930 1.16714 1.35501 1.18506 0.95258 0.82218 0.93760 1.21159 1.10318 0.95292 0.98558 1.20784 0.96572 0.93268 0.97685 1.21235 1.01787 1.01541 0.93101 1.17161 0.93655 0.89363 0.87719 1.42578 1.52545 1.30011 1.08268 1.15191 0.78069 0.79661 0.83636 1.90861 1.65848 1.67123 1.23023 1.48825 1.51686 1.32147 1.06108 1.24188 1.02889 1.01447 0.76786 1.19474 0.82779 0.87304 0.90547 1.86060 1.49683 1.62348 1.40272 1.21416 1.46677 0.95254 0.93766 0.90840 1.25089 0.93392 0.95412 0.99209 1.69263 1.45679 1.12502 1.26404 0.86295 0.78880 0.80440 0.80706 1.20212 1.20921 1.19520 1.23243 0.90671 0.88185 0.97272 1.20020 1.09511 0.91921 0.99341 0.92484 0.91753 0.92787 0.90207 0.90808 0.91462 0.91177 0.91572 0.85662 0.85735 0.84215 0.75754 0.91983 0.90090 0.74978 0.91544 0.89688 0.91422 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.81 37.16 0.36 -0.89 16 2 C -0.12 -0.86 5.64 -26.73 -0.15 -1.01 16 3 C 0.08 0.71 2.23 -26.73 -0.06 0.65 16 4 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 5 C -0.18 -1.32 9.16 37.15 0.34 -0.98 16 6 O -0.31 -3.72 9.34 -19.42 -0.18 -3.90 16 7 C 0.15 1.97 6.59 -39.24 -0.26 1.71 16 8 C -0.23 -2.81 8.22 -39.39 -0.32 -3.14 16 9 C -0.06 -0.83 10.03 -39.63 -0.40 -1.23 16 10 C -0.16 -2.48 8.68 -39.37 -0.34 -2.82 16 11 C 0.22 3.53 6.26 -83.71 -0.52 3.01 16 12 N -0.69 -11.80 5.34 -14.24 -0.08 -11.88 16 13 C 0.73 15.20 8.63 -86.92 -0.75 14.45 16 14 O -0.59 -13.70 14.67 5.29 0.08 -13.62 16 15 N -0.65 -13.68 3.69 -191.20 -0.71 -14.39 16 16 C 0.07 1.46 7.69 -8.63 -0.07 1.39 16 17 C 0.24 5.67 1.57 -91.40 -0.14 5.53 16 18 O -0.57 -14.63 13.53 -35.23 -0.48 -15.10 16 19 C -0.53 -13.01 8.69 -34.44 -0.30 -13.31 16 20 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 21 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 22 N -0.90 -22.32 11.01 55.43 0.61 -21.71 16 23 Si 0.91 19.05 29.54 -169.99 -5.02 14.03 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 C 0.13 2.78 8.03 -8.52 -0.07 2.71 16 28 C -0.19 -2.72 9.91 -39.25 -0.39 -3.11 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.52 6.84 -51.93 -0.36 0.17 16 37 H 0.13 1.19 5.40 -52.49 -0.28 0.91 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.14 2.46 6.36 -52.49 -0.33 2.12 16 40 H 0.41 6.11 8.55 -40.82 -0.35 5.76 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 43 H 0.39 10.19 6.33 45.56 0.29 10.47 16 44 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 45 H 0.09 1.66 8.10 -51.93 -0.42 1.23 16 46 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -28.69 386.20 -9.50 -38.19 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -6.38 Total: 17.98 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.16 Total: 4.59 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.17 Total: -47.98 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.58 Total: -32.62 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.69 -9.50 -38.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649891523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.671 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds