Wall clock time and date at job start Tue Mar 31 2020 18:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47430 * 2 1 4 4 H 1.09002 * 109.46425 * 305.00221 * 3 2 1 5 5 C 1.52993 * 109.47186 * 185.00180 * 3 2 1 6 6 O 1.42895 * 109.47085 * 64.99524 * 3 2 1 7 7 C 1.35897 * 117.00272 * 204.37180 * 6 3 2 8 8 C 1.38809 * 120.01882 * 354.60156 * 7 6 3 9 9 C 1.38172 * 120.08202 * 179.73992 * 8 7 6 10 10 C 1.38165 * 120.12170 * 0.25639 * 9 8 7 11 11 C 1.38884 * 120.04476 * 0.02562 * 10 9 8 12 12 N 1.39940 * 120.04076 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00441 * 36.91236 * 12 11 10 14 14 O 1.21588 * 119.99810 * 355.54662 * 13 12 11 15 15 N 1.34778 * 120.00362 * 175.54171 * 13 12 11 16 16 C 1.47073 * 136.05210 * 359.63761 * 15 13 12 17 17 C 1.53245 * 88.07735 * 207.19932 * 16 15 13 18 18 O 1.42896 * 114.02096 * 87.71535 * 17 16 15 19 19 C 1.50704 * 114.32183 * 220.47097 * 17 16 15 20 20 H 1.07997 * 119.99936 * 93.75849 * 19 17 16 21 21 C 1.37880 * 119.99820 * 273.75700 * 19 17 16 22 22 N 1.31516 * 119.99948 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99841 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47044 * 90.00333 * 23 21 19 25 25 H 1.48505 * 109.46842 * 209.99698 * 23 21 19 26 26 H 1.48491 * 109.47164 * 329.99989 * 23 21 19 27 27 C 1.47061 * 136.06256 * 180.02562 * 15 13 12 28 28 C 1.38583 * 120.02160 * 174.87150 * 7 6 3 29 29 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46798 * 300.00174 * 1 2 3 31 31 H 1.09002 * 109.46906 * 59.99592 * 1 2 3 32 32 H 1.09003 * 109.47282 * 240.00030 * 2 1 3 33 33 H 1.09003 * 109.47399 * 120.00221 * 2 1 3 34 34 H 1.08999 * 109.47679 * 299.99886 * 5 3 2 35 35 H 1.09002 * 109.47194 * 59.99984 * 5 3 2 36 36 H 1.09004 * 109.46954 * 179.97438 * 5 3 2 37 37 H 1.07994 * 119.96065 * 0.02562 * 8 7 6 38 38 H 1.07997 * 119.93523 * 180.23155 * 9 8 7 39 39 H 1.08000 * 119.97831 * 180.02562 * 10 9 8 40 40 H 0.97002 * 119.99671 * 216.91563 * 12 11 10 41 41 H 1.08999 * 113.46767 * 321.92559 * 16 15 13 42 42 H 1.08990 * 113.46935 * 92.37196 * 16 15 13 43 43 H 0.96702 * 114.00020 * 86.38569 * 18 17 16 44 44 H 0.97000 * 119.99902 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.46561 * 267.63234 * 27 15 13 46 46 H 1.08997 * 113.46718 * 38.06250 * 27 15 13 47 47 H 1.08000 * 120.06245 * 0.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6620 2.0814 1.2210 7 6 1.5650 3.4368 1.2038 8 6 1.9361 4.1453 0.0693 9 6 1.8330 5.5230 0.0485 10 6 1.3653 6.2001 1.1583 11 6 0.9980 5.4969 2.2983 12 7 0.5248 6.1828 3.4225 13 6 -0.2557 7.2707 3.2691 14 8 -0.4824 7.7042 2.1559 15 7 -0.7850 7.8782 4.3495 16 6 -0.7550 7.6659 5.8045 17 6 -2.1223 8.3536 5.8811 18 8 -3.2296 7.4682 5.7024 19 6 -2.2837 9.2852 7.0547 20 1 -2.0723 10.3382 6.9413 21 6 -2.7013 8.7931 8.2731 22 7 -2.9592 7.5109 8.4109 23 14 -2.9020 9.9479 9.7276 24 1 -4.2876 10.4815 9.7484 25 1 -2.6378 9.2075 10.9875 26 1 -1.9402 11.0724 9.6032 27 6 -1.6522 9.0409 4.5919 28 6 1.1008 4.1129 2.3209 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9996 0.9053 0.7160 35 1 3.8532 0.9569 -1.0572 36 1 3.9282 2.4720 -0.1262 37 1 2.3016 3.6187 -0.7999 38 1 2.1188 6.0715 -0.8368 39 1 1.2852 7.2770 1.1394 40 1 0.7586 5.8752 4.3122 41 1 -0.7830 6.6145 6.0904 42 1 0.0380 8.2191 6.3076 43 1 -3.5234 7.0367 6.5164 44 1 -3.2526 7.1646 9.2682 45 1 -1.1008 9.9644 4.7684 46 1 -2.4414 9.1562 3.8490 47 1 0.8161 3.5637 3.2062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649891523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:44 Heat of formation + Delta-G solvation = -69.735335 kcal Electronic energy + Delta-G solvation = -28421.825350 eV Core-core repulsion = 24377.773576 eV Total energy + Delta-G solvation = -4044.051774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92270 -41.16088 -39.96107 -38.41752 -35.91630 -35.72842 -34.96723 -34.12528 -31.71461 -30.95634 -30.62361 -29.45536 -27.11189 -26.85299 -25.00087 -23.93192 -23.68321 -22.38217 -21.37461 -20.63901 -19.61759 -19.43401 -18.64165 -17.54845 -17.23466 -17.08662 -16.90672 -16.53629 -16.36618 -16.15333 -15.84892 -15.17154 -15.04191 -14.73361 -14.65934 -14.49363 -14.45483 -14.25991 -14.08710 -13.79283 -13.40825 -13.39061 -13.08716 -12.80205 -12.76616 -12.73655 -12.61560 -12.21598 -12.18762 -12.16711 -11.99089 -11.74479 -11.62187 -11.46358 -11.17792 -11.03681 -10.67274 -10.28717 -9.74639 -9.43939 -8.97628 -8.27740 -6.44590 0.22941 0.45597 1.33086 1.47873 1.52017 1.60604 1.97861 2.23493 2.40696 2.78551 2.82669 2.97342 3.70081 3.72678 3.86870 3.96762 4.03411 4.09748 4.16852 4.23202 4.27030 4.36845 4.44587 4.53253 4.57009 4.61759 4.67982 4.68965 4.69191 4.82579 4.85942 4.88706 4.98809 5.06846 5.16679 5.21530 5.25692 5.27762 5.28994 5.35852 5.41367 5.51458 5.73006 5.88011 5.89560 6.12962 6.49547 6.62057 6.92900 7.28386 7.39193 7.48577 8.78559 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.002240 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.040792 B =12495.461884 C =13240.912733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C 0.070 3.930 4 H 0.081 0.919 5 C -0.178 4.178 6 O -0.320 6.320 7 C 0.149 3.851 8 C -0.221 4.221 9 C -0.059 4.059 10 C -0.177 4.177 11 C 0.192 3.808 12 N -0.677 5.677 13 C 0.726 3.274 14 O -0.618 6.618 15 N -0.654 5.654 16 C 0.085 3.915 17 C 0.220 3.780 18 O -0.587 6.587 19 C -0.549 4.549 20 H 0.077 0.923 21 C 0.031 3.969 22 N -0.918 5.918 23 Si 0.972 3.028 24 H -0.279 1.279 25 H -0.282 1.282 26 H -0.264 1.264 27 C 0.131 3.869 28 C -0.195 4.195 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.118 0.882 40 H 0.416 0.584 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.389 0.611 44 H 0.276 0.724 45 H 0.107 0.893 46 H 0.054 0.946 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.054 -12.801 -13.583 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C 0.015 3.985 4 H 0.099 0.901 5 C -0.235 4.235 6 O -0.234 6.234 7 C 0.103 3.897 8 C -0.240 4.240 9 C -0.077 4.077 10 C -0.198 4.198 11 C 0.097 3.903 12 N -0.324 5.324 13 C 0.430 3.570 14 O -0.500 6.500 15 N -0.390 5.390 16 C -0.037 4.037 17 C 0.178 3.822 18 O -0.400 6.400 19 C -0.587 4.587 20 H 0.096 0.904 21 C -0.169 4.169 22 N -0.559 5.559 23 Si 0.797 3.203 24 H -0.205 1.205 25 H -0.207 1.207 26 H -0.188 1.188 27 C 0.008 3.992 28 C -0.216 4.216 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.136 0.864 40 H 0.253 0.747 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.245 0.755 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.073 0.927 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.906 -12.652 -14.828 23.377 hybrid contribution -0.327 0.312 1.884 1.938 sum 12.579 -12.340 -12.944 21.864 Atomic orbital electron populations 1.21781 0.95867 1.02283 1.01502 1.21673 0.96158 0.93170 1.04226 1.22833 0.96155 0.94403 0.85111 0.90133 1.22380 0.93908 1.03206 1.03997 1.86098 1.83821 1.15907 1.37605 1.18606 0.94483 0.83050 0.93598 1.21477 1.08633 0.94903 0.98983 1.21083 0.95241 0.93853 0.97532 1.21204 1.03578 1.00694 0.94331 1.17353 0.95233 0.90040 0.87692 1.42390 1.51735 1.28976 1.09278 1.15339 0.78311 0.80270 0.83032 1.90832 1.67024 1.68149 1.23954 1.48783 1.51843 1.32165 1.06250 1.23996 1.01741 1.01270 0.76741 1.19760 0.83257 0.87742 0.91435 1.86046 1.50884 1.62847 1.40189 1.21642 1.47161 0.95608 0.94285 0.90442 1.25786 0.93078 0.96675 1.01399 1.69328 1.45953 1.13660 1.26951 0.85338 0.78518 0.78742 0.77739 1.20517 1.20736 1.18829 1.23257 0.90803 0.89164 0.96009 1.20076 1.09967 0.91341 1.00261 0.91346 0.94219 0.92541 0.87474 0.91101 0.91855 0.88661 0.92139 0.82539 0.82908 0.86441 0.74750 0.92126 0.88594 0.75514 0.91377 0.87556 0.92723 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.81 71.98 0.71 -1.60 16 2 C -0.12 -1.39 5.64 30.60 0.17 -1.22 16 3 C 0.07 1.05 2.23 30.59 0.07 1.12 16 4 H 0.08 1.10 6.34 -2.39 -0.02 1.08 16 5 C -0.18 -2.04 9.16 71.98 0.66 -1.38 16 6 O -0.32 -7.25 9.34 -92.39 -0.86 -8.11 16 7 C 0.15 3.77 6.59 22.49 0.15 3.92 16 8 C -0.22 -4.80 8.22 22.39 0.18 -4.62 16 9 C -0.06 -1.43 10.03 22.24 0.22 -1.20 16 10 C -0.18 -5.68 8.68 22.41 0.19 -5.49 16 11 C 0.19 6.33 6.26 38.13 0.24 6.56 16 12 N -0.68 -23.72 5.34 -317.23 -1.69 -25.41 16 13 C 0.73 30.87 8.63 179.06 1.54 32.42 16 14 O -0.62 -29.53 14.67 -3.99 -0.06 -29.59 16 15 N -0.65 -27.78 3.69 -877.56 -3.24 -31.02 16 16 C 0.09 3.55 7.69 83.09 0.64 4.19 16 17 C 0.22 10.42 1.57 -11.30 -0.02 10.40 16 18 O -0.59 -30.77 13.53 -148.98 -2.02 -32.78 16 19 C -0.55 -26.69 8.69 25.60 0.22 -26.47 16 20 H 0.08 3.61 7.81 -2.91 -0.02 3.59 16 21 C 0.03 1.49 5.40 84.66 0.46 1.95 16 22 N -0.92 -45.74 11.01 21.45 0.24 -45.50 16 23 Si 0.97 38.61 29.54 68.60 2.03 40.64 16 24 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 27 C 0.13 5.67 8.03 83.17 0.67 6.34 16 28 C -0.19 -5.69 9.91 22.48 0.22 -5.46 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.77 7.82 -2.39 -0.02 0.75 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.77 6.84 -2.38 -0.02 0.76 16 37 H 0.16 2.39 5.40 -2.91 -0.02 2.37 16 38 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 39 H 0.12 4.28 6.36 -2.91 -0.02 4.26 16 40 H 0.42 12.69 8.55 -92.71 -0.79 11.90 16 41 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.10 3.69 8.10 -2.39 -0.02 3.67 16 43 H 0.39 20.65 6.33 -74.06 -0.47 20.18 16 44 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 45 H 0.11 4.10 8.10 -2.39 -0.02 4.09 16 46 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -62.10 386.20 0.46 -61.64 By element: Atomic # 1 Polarization: 50.93 SS G_CDS: -0.26 Total: 50.67 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.33 Total: 19.47 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -4.70 Total: -101.93 kcal Atomic # 8 Polarization: -67.55 SS G_CDS: -2.94 Total: -70.48 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -62.10 0.46 -61.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649891523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.099 kcal (2) G-P(sol) polarization free energy of solvation -62.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds