Wall clock time and date at job start Tue Mar 31 2020 18:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47023 * 2 1 4 4 H 1.09004 * 109.47175 * 304.30595 * 3 2 1 5 5 C 1.52994 * 109.46951 * 184.30956 * 3 2 1 6 6 S 1.81405 * 109.47123 * 179.97438 * 5 3 2 7 7 O 1.42097 * 110.54150 * 68.37270 * 6 5 3 8 8 O 1.42105 * 110.54055 * 291.62192 * 6 5 3 9 9 N 1.65605 * 104.45144 * 179.97438 * 6 5 3 10 10 C 1.46503 * 119.99602 * 64.72268 * 9 6 5 11 11 C 1.53003 * 109.46774 * 165.00430 * 10 9 6 12 12 C 1.53049 * 109.45812 * 295.02631 * 11 10 9 13 13 C 1.53192 * 109.31289 * 178.60199 * 12 11 10 14 14 N 1.46928 * 108.76397 * 54.65312 * 13 12 11 15 15 C 1.36941 * 120.62835 * 126.40437 * 14 13 12 16 16 H 1.07997 * 120.00251 * 333.12903 * 15 14 13 17 17 C 1.38812 * 119.99709 * 153.12613 * 15 14 13 18 18 N 1.31623 * 119.99565 * 159.68429 * 17 15 14 19 19 Si 1.86795 * 120.00292 * 339.68936 * 17 15 14 20 20 H 1.48498 * 109.47454 * 95.12691 * 19 17 15 21 21 H 1.48506 * 109.47182 * 215.13171 * 19 17 15 22 22 H 1.48501 * 109.47127 * 335.12648 * 19 17 15 23 23 C 1.46926 * 118.74018 * 306.38320 * 14 13 12 24 24 C 1.53038 * 109.45980 * 174.97349 * 11 10 9 25 25 O 1.42896 * 109.47210 * 64.30525 * 3 2 1 26 26 C 1.42902 * 114.00135 * 252.55755 * 25 3 2 27 27 H 1.09001 * 109.46833 * 174.13730 * 1 2 3 28 28 H 1.08995 * 109.47298 * 294.14075 * 1 2 3 29 29 H 1.09003 * 109.46511 * 54.13699 * 1 2 3 30 30 H 1.08995 * 109.47159 * 240.00069 * 2 1 3 31 31 H 1.08998 * 109.47248 * 119.99286 * 2 1 3 32 32 H 1.08996 * 109.47637 * 59.99830 * 5 3 2 33 33 H 1.08996 * 109.47125 * 299.99574 * 5 3 2 34 34 H 0.96995 * 120.00028 * 245.00566 * 9 6 5 35 35 H 1.08999 * 109.47240 * 284.99627 * 10 9 6 36 36 H 1.08989 * 109.47144 * 45.00171 * 10 9 6 37 37 H 1.08997 * 109.46224 * 54.99254 * 11 10 9 38 38 H 1.09001 * 109.49202 * 298.56631 * 12 11 10 39 39 H 1.08998 * 109.49607 * 58.66124 * 12 11 10 40 40 H 1.08997 * 109.59452 * 294.87123 * 13 12 11 41 41 H 1.08989 * 109.70338 * 174.50421 * 13 12 11 42 42 H 0.97003 * 119.99623 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.59052 * 293.82025 * 23 14 13 44 44 H 1.09001 * 109.70304 * 173.46372 * 23 14 13 45 45 H 1.09001 * 109.49685 * 301.33366 * 24 11 10 46 46 H 1.09005 * 109.49839 * 61.39783 * 24 11 10 47 47 H 1.08993 * 109.47036 * 179.88215 * 26 25 3 48 48 H 1.09009 * 109.47075 * 299.87760 * 26 25 3 49 49 H 1.08996 * 109.46936 * 59.87497 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6150 1.9782 -0.8489 5 6 3.5661 1.4439 -0.1084 6 16 4.1708 3.1542 -0.1092 7 8 3.9635 3.7569 1.1609 8 8 3.7883 3.8177 -1.3062 9 7 5.8163 3.0108 -0.2289 10 6 6.4154 2.4358 -1.4358 11 6 7.9122 2.7520 -1.4624 12 6 8.1116 4.2640 -1.5912 13 6 9.6106 4.5799 -1.5823 14 7 10.2657 3.7931 -2.6361 15 6 11.0485 4.4045 -3.5788 16 1 10.8688 5.4360 -3.8434 17 6 12.0729 3.6984 -4.1943 18 7 12.5582 4.1124 -5.3456 19 14 12.7627 2.1607 -3.3887 20 1 12.0845 0.9631 -3.9462 21 1 14.2209 2.0734 -3.6561 22 1 12.5312 2.2233 -1.9232 23 6 10.0653 2.3377 -2.6590 24 6 8.5612 2.0470 -2.6556 25 8 1.6481 2.0863 1.2140 26 6 0.6068 3.0513 1.0503 27 1 -0.3633 -1.0223 -0.1050 28 1 -0.3633 0.4203 0.9377 29 1 -0.3632 0.6021 -0.8329 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.8651 0.9528 -1.0344 33 1 3.9911 0.9083 0.7405 34 1 6.3830 3.3036 0.5017 35 1 6.2725 1.3552 -1.4331 36 1 5.9381 2.8632 -2.3174 37 1 8.3737 2.4024 -0.5389 38 1 7.6721 4.6104 -2.5266 39 1 7.6289 4.7673 -0.7535 40 1 10.0339 4.3165 -0.6131 41 1 9.7633 5.6424 -1.7713 42 1 13.2744 3.6192 -5.7755 43 1 10.5258 1.8915 -1.7776 44 1 10.5163 1.9188 -3.5586 45 1 8.3986 0.9721 -2.5755 46 1 8.1170 2.4141 -3.5808 47 1 0.3655 3.4929 2.0171 48 1 0.9397 3.8326 0.3669 49 1 -0.2787 2.5644 0.6419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660870966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:24 Heat of formation + Delta-G solvation = -133.503530 kcal Electronic energy + Delta-G solvation = -27998.073941 eV Core-core repulsion = 24086.700922 eV Total energy + Delta-G solvation = -3911.373019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.80755 -39.72171 -38.13889 -37.00619 -36.74096 -34.71797 -34.38549 -32.60635 -31.83061 -31.54822 -28.14148 -27.65006 -25.41960 -25.04329 -24.13458 -22.81547 -22.28932 -20.95741 -20.25305 -18.89828 -18.39693 -18.14265 -17.67414 -17.29940 -16.90752 -16.57386 -15.96062 -15.87118 -15.67939 -15.51838 -15.16753 -15.08502 -14.81756 -14.47795 -14.25210 -14.03776 -13.96395 -13.74195 -13.65526 -13.38427 -13.21029 -13.13750 -13.05197 -12.93471 -12.76029 -12.50357 -12.33245 -12.21473 -12.19783 -12.08726 -11.82202 -11.67810 -11.59568 -11.51806 -11.22739 -11.18882 -10.68089 -10.65717 -10.26930 -8.90587 -8.14689 -5.46062 -0.73217 1.30910 1.43423 1.52818 1.76925 2.43411 2.57411 2.79563 3.08608 3.27666 3.38945 3.46931 3.75234 3.81066 3.94024 3.96244 3.96972 4.18308 4.33255 4.37543 4.41648 4.42872 4.44239 4.48903 4.56294 4.59596 4.68004 4.74847 4.79211 4.81825 4.87847 4.90035 4.96142 5.06469 5.10435 5.17960 5.20953 5.25202 5.27580 5.32517 5.38459 5.63723 5.88599 6.03713 6.11081 6.13983 6.95022 7.65826 8.05098 9.05579 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.002439 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.783827 B =11478.497773 C =11958.758175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.128 4.128 3 C 0.082 3.918 4 H 0.082 0.918 5 C -0.620 4.620 6 S 2.610 3.390 7 O -0.982 6.982 8 O -0.998 6.998 9 N -1.114 6.114 10 C 0.118 3.882 11 C -0.080 4.080 12 C -0.124 4.124 13 C 0.141 3.859 14 N -0.623 5.623 15 C -0.249 4.249 16 H 0.044 0.956 17 C -0.042 4.042 18 N -0.962 5.962 19 Si 0.955 3.045 20 H -0.271 1.271 21 H -0.315 1.315 22 H -0.257 1.257 23 C 0.116 3.884 24 C -0.122 4.122 25 O -0.397 6.397 26 C 0.011 3.989 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.175 0.825 33 H 0.164 0.836 34 H 0.423 0.577 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.045 0.955 42 H 0.261 0.739 43 H 0.038 0.962 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.100 0.900 48 H 0.035 0.965 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.748 -12.782 14.313 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.166 4.166 3 C 0.022 3.978 4 H 0.100 0.900 5 C -0.752 4.752 6 S 2.706 3.294 7 O -0.972 6.972 8 O -0.988 6.988 9 N -0.875 5.875 10 C -0.008 4.008 11 C -0.100 4.100 12 C -0.163 4.163 13 C 0.017 3.983 14 N -0.348 5.348 15 C -0.379 4.379 16 H 0.062 0.938 17 C -0.237 4.237 18 N -0.608 5.608 19 Si 0.784 3.216 20 H -0.197 1.197 21 H -0.244 1.244 22 H -0.181 1.181 23 C -0.009 4.009 24 C -0.162 4.162 25 O -0.316 6.316 26 C -0.085 4.085 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.193 0.807 33 H 0.182 0.818 34 H 0.259 0.741 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.119 0.881 48 H 0.053 0.947 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.150 -12.030 14.288 32.136 hybrid contribution 1.237 -0.357 -0.226 1.307 sum -24.914 -12.387 14.063 31.175 Atomic orbital electron populations 1.21856 0.95004 1.02831 1.02005 1.21899 0.96912 0.93548 1.04269 1.22119 0.90362 0.97154 0.88148 0.89976 1.30754 1.05061 1.24405 1.14962 1.04694 0.73331 0.78432 0.72897 1.93564 1.84537 1.75707 1.43422 1.93569 1.82763 1.72769 1.49666 1.55373 1.25304 1.79790 1.27033 1.21534 0.93654 0.99461 0.86181 1.21189 0.94342 0.94998 0.99452 1.21976 0.96125 0.96811 1.01414 1.21104 0.92198 0.94746 0.90289 1.44511 1.55915 1.03205 1.31141 1.18865 1.08508 0.97346 1.13133 0.93791 1.25979 0.98080 1.02305 0.97289 1.69992 1.30321 1.43746 1.16764 0.85777 0.75770 0.79979 0.80074 1.19745 1.24439 1.18098 1.21452 0.96567 0.83913 0.98922 1.21949 0.94875 1.01204 0.98177 1.88002 1.56252 1.56115 1.31279 1.23202 0.90399 0.90989 1.03891 0.91230 0.92667 0.92355 0.88715 0.90473 0.80681 0.81830 0.74116 0.87812 0.91219 0.89046 0.93694 0.90396 0.94379 0.93673 0.93030 0.94379 0.93504 0.88525 0.92772 0.88109 0.94672 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.92 71.98 0.64 -0.71 16 2 C -0.13 -1.15 5.65 30.60 0.17 -0.98 16 3 C 0.08 1.07 2.31 30.59 0.07 1.14 16 4 H 0.08 1.00 7.64 -2.39 -0.02 0.98 16 5 C -0.62 -6.69 5.79 71.98 0.42 -6.28 16 6 S 2.61 51.98 5.25 -56.49 -0.30 51.68 16 7 O -0.98 -26.23 17.41 -123.50 -2.15 -28.38 16 8 O -1.00 -27.31 17.51 -127.65 -2.24 -29.55 16 9 N -1.11 -19.28 5.39 -187.49 -1.01 -20.29 16 10 C 0.12 2.07 5.52 86.38 0.48 2.55 16 11 C -0.08 -1.91 2.18 -10.76 -0.02 -1.94 16 12 C -0.12 -3.76 5.26 30.67 0.16 -3.60 16 13 C 0.14 5.40 6.52 86.36 0.56 5.96 16 14 N -0.62 -29.04 2.78 -699.11 -1.94 -30.98 16 15 C -0.25 -14.36 10.05 84.03 0.84 -13.51 16 16 H 0.04 2.82 8.05 -2.91 -0.02 2.79 16 17 C -0.04 -2.51 5.24 84.86 0.45 -2.06 16 18 N -0.96 -61.32 13.97 21.65 0.30 -61.02 16 19 Si 0.96 46.26 24.34 68.60 1.67 47.93 16 20 H -0.27 -12.17 6.70 99.48 0.67 -11.50 16 21 H -0.32 -15.67 7.11 99.48 0.71 -14.96 16 22 H -0.26 -11.71 6.43 99.48 0.64 -11.07 16 23 C 0.12 4.60 4.19 86.36 0.36 4.96 16 24 C -0.12 -3.52 5.36 30.67 0.16 -3.35 16 25 O -0.40 -7.01 9.05 -142.55 -1.29 -8.30 16 26 C 0.01 0.16 10.43 113.37 1.18 1.34 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.54 7.22 -2.39 -0.02 0.52 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.18 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.42 6.65 8.35 -96.75 -0.81 5.84 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.42 7.70 -2.39 -0.02 1.40 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 2.01 7.51 -2.39 -0.02 1.99 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.04 1.83 7.93 -2.39 -0.02 1.81 16 42 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 43 H 0.04 1.42 6.97 -2.39 -0.02 1.41 16 44 H 0.05 2.09 4.46 -2.39 -0.01 2.08 16 45 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.07 0.69 6.79 -2.39 -0.02 0.67 16 Total: -1.00 -81.73 388.27 -1.47 -83.20 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.01 Total: 12.17 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 5.48 Total: -16.47 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -2.65 Total: -112.29 kcal Atomic # 8 Polarization: -60.55 SS G_CDS: -5.68 Total: -66.22 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.93 kcal Atomic # 16 Polarization: 51.98 SS G_CDS: -0.30 Total: 51.68 kcal Total: -81.73 -1.47 -83.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660870966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.304 kcal (2) G-P(sol) polarization free energy of solvation -81.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds