Wall clock time and date at job start Tue Mar 31 2020 18:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47484 * 2 1 4 4 H 1.08999 * 109.47383 * 54.10143 * 3 2 1 5 5 C 1.52998 * 109.47138 * 174.10427 * 3 2 1 6 6 S 1.81396 * 109.47332 * 184.35148 * 5 3 2 7 7 O 1.42098 * 110.54400 * 288.40758 * 6 5 3 8 8 O 1.42098 * 110.54326 * 65.15702 * 6 5 3 9 9 N 1.65601 * 104.45355 * 176.78105 * 6 5 3 10 10 C 1.46503 * 119.99705 * 64.99617 * 9 6 5 11 11 C 1.53005 * 109.46794 * 165.00373 * 10 9 6 12 12 C 1.53039 * 109.46172 * 295.02904 * 11 10 9 13 13 C 1.53186 * 109.31699 * 178.60338 * 12 11 10 14 14 N 1.46925 * 108.76411 * 54.65214 * 13 12 11 15 15 C 1.36936 * 120.63007 * 126.41013 * 14 13 12 16 16 H 1.08004 * 120.00158 * 330.77012 * 15 14 13 17 17 C 1.38816 * 119.99995 * 150.77497 * 15 14 13 18 18 N 1.31618 * 119.99756 * 343.12710 * 17 15 14 19 19 Si 1.86805 * 119.99998 * 163.13531 * 17 15 14 20 20 H 1.48494 * 109.47040 * 89.99467 * 19 17 15 21 21 H 1.48501 * 109.46807 * 209.99898 * 19 17 15 22 22 H 1.48501 * 109.46510 * 329.99634 * 19 17 15 23 23 C 1.46929 * 118.73833 * 306.38562 * 14 13 12 24 24 C 1.53043 * 109.45875 * 174.97373 * 11 10 9 25 25 O 1.42899 * 109.47028 * 294.10324 * 3 2 1 26 26 C 1.42893 * 114.00121 * 113.67135 * 25 3 2 27 27 H 1.08998 * 109.46882 * 299.53916 * 1 2 3 28 28 H 1.09008 * 109.46898 * 59.52873 * 1 2 3 29 29 H 1.08994 * 109.47868 * 179.53408 * 1 2 3 30 30 H 1.09005 * 109.46966 * 239.99474 * 2 1 3 31 31 H 1.09004 * 109.46645 * 120.00438 * 2 1 3 32 32 H 1.09005 * 109.47087 * 304.34746 * 5 3 2 33 33 H 1.09001 * 109.47620 * 64.34661 * 5 3 2 34 34 H 0.97003 * 120.00210 * 245.00661 * 9 6 5 35 35 H 1.09002 * 109.47323 * 284.99867 * 10 9 6 36 36 H 1.08994 * 109.46889 * 45.00508 * 10 9 6 37 37 H 1.08998 * 109.46256 * 55.00261 * 11 10 9 38 38 H 1.09006 * 109.49476 * 298.56808 * 12 11 10 39 39 H 1.08999 * 109.49842 * 58.65922 * 12 11 10 40 40 H 1.09001 * 109.59800 * 294.87094 * 13 12 11 41 41 H 1.08996 * 109.70687 * 174.50911 * 13 12 11 42 42 H 0.96999 * 119.99486 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.59234 * 293.81934 * 23 14 13 44 44 H 1.09010 * 109.69887 * 173.46370 * 23 14 13 45 45 H 1.09000 * 109.49562 * 301.33572 * 24 11 10 46 46 H 1.09004 * 109.49372 * 61.39994 * 24 11 10 47 47 H 1.09002 * 109.47097 * 175.28944 * 26 25 3 48 48 H 1.09002 * 109.47486 * 55.28801 * 26 25 3 49 49 H 1.08998 * 109.47165 * 295.28446 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5931 1.9859 0.8324 5 6 3.5629 1.4449 0.1482 6 16 4.1551 3.1545 0.2774 7 8 4.0449 3.8165 -0.9751 8 8 3.6755 3.7595 1.4704 9 7 5.7867 3.0095 0.5205 10 6 6.6355 2.4377 -0.5278 11 6 8.1019 2.7522 -0.2247 12 6 8.3255 4.2643 -0.3015 13 6 9.7862 4.5783 0.0365 14 7 10.6558 3.7941 -0.8509 15 6 11.6264 4.4076 -1.5970 16 1 11.4923 5.4285 -1.9232 17 6 12.7827 3.7175 -1.9342 18 7 13.1077 2.6205 -1.2836 19 14 13.8775 4.3458 -3.3113 20 1 14.8920 5.2749 -2.7522 21 1 14.5612 3.1994 -3.9621 22 1 13.0492 5.0625 -4.3141 23 6 10.4646 2.3391 -0.9221 24 6 8.9962 2.0502 -1.2492 25 8 1.6801 2.0749 -1.2298 26 6 0.7369 3.1381 -1.0823 27 1 -0.3633 0.5067 0.8941 28 1 -0.3633 0.5212 -0.8858 29 1 -0.3634 -1.0275 -0.0084 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8413 0.8950 1.0472 33 1 4.0135 0.9691 -0.7228 34 1 6.1805 3.3030 1.3571 35 1 6.4949 1.3573 -0.5601 36 1 6.3630 2.8686 -1.4911 37 1 8.3498 2.3989 0.7762 38 1 8.1017 4.6143 -1.3093 39 1 7.6712 4.7655 0.4118 40 1 9.9869 4.3113 1.0741 41 1 9.9771 5.6413 -0.1106 42 1 13.9158 2.1385 -1.5190 43 1 10.7206 1.8894 0.0372 44 1 11.1015 1.9225 -1.7026 45 1 8.8194 0.9753 -1.2103 46 1 8.7656 2.4210 -2.2480 47 1 0.5790 3.6202 -2.0471 48 1 1.1207 3.8682 -0.3697 49 1 -0.2087 2.7369 -0.7177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660870967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:27 Heat of formation + Delta-G solvation = -112.747182 kcal Electronic energy + Delta-G solvation = -27945.935225 eV Core-core repulsion = 24035.462268 eV Total energy + Delta-G solvation = -3910.472956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.09588 -38.15696 -37.17064 -36.02409 -35.26490 -34.19246 -32.66508 -30.95372 -30.63123 -29.62669 -27.04449 -26.50244 -24.50426 -23.88492 -22.14070 -21.74007 -21.14792 -19.60726 -19.00456 -17.76254 -17.44750 -16.78594 -16.65268 -16.28381 -15.83559 -15.17062 -14.89216 -14.65384 -14.44355 -14.29341 -13.90956 -13.74708 -13.49246 -13.39901 -13.15796 -12.86453 -12.78403 -12.41024 -12.37017 -12.20623 -12.09310 -12.04734 -11.81924 -11.78750 -11.66386 -11.32130 -11.23795 -10.97678 -10.97401 -10.68607 -10.49648 -10.22192 -10.20793 -10.07704 -9.87560 -9.63254 -9.43398 -9.32144 -8.45090 -6.62643 -5.77490 -3.19944 0.10022 2.61727 3.16218 3.38709 3.45685 3.48858 3.57861 4.03974 4.11642 4.28993 4.47464 4.51834 4.75217 4.83928 4.90816 4.94284 4.97088 5.01184 5.15788 5.24091 5.34177 5.36814 5.41332 5.41973 5.48102 5.50679 5.63278 5.66363 5.81709 5.85086 5.91601 6.09177 6.20940 6.35471 6.54373 6.61174 6.65283 6.69813 6.79121 6.86252 6.92278 7.04304 7.37324 7.65356 7.82234 8.48139 9.23990 9.87356 10.44921 11.31244 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026703 B = 0.002326 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.311605 B =12033.366174 C =12224.650230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C 0.098 3.902 4 H 0.078 0.922 5 C -0.645 4.645 6 S 2.609 3.391 7 O -0.940 6.940 8 O -0.966 6.966 9 N -1.115 6.115 10 C 0.116 3.884 11 C -0.083 4.083 12 C -0.128 4.128 13 C 0.144 3.856 14 N -0.592 5.592 15 C -0.251 4.251 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.173 3.827 24 C -0.136 4.136 25 O -0.375 6.375 26 C 0.021 3.979 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.418 0.582 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.016 0.984 41 H 0.053 0.947 42 H 0.253 0.747 43 H 0.017 0.983 44 H 0.085 0.915 45 H 0.050 0.950 46 H 0.058 0.942 47 H 0.097 0.903 48 H 0.042 0.958 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.825 -6.267 4.587 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.166 4.166 3 C 0.038 3.962 4 H 0.096 0.904 5 C -0.773 4.773 6 S 2.700 3.300 7 O -0.929 6.929 8 O -0.956 6.956 9 N -0.875 5.875 10 C -0.010 4.010 11 C -0.103 4.103 12 C -0.168 4.168 13 C 0.018 3.982 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.047 3.953 24 C -0.176 4.176 25 O -0.294 6.294 26 C -0.076 4.076 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.252 0.748 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.115 0.885 48 H 0.061 0.939 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -25.147 -5.670 4.139 26.108 hybrid contribution 0.899 -0.346 -0.029 0.964 sum -24.248 -6.016 4.110 25.319 Atomic orbital electron populations 1.21814 0.95186 1.02275 1.02124 1.21838 0.96635 0.94704 1.03447 1.21812 0.90102 0.96265 0.88023 0.90393 1.30983 1.05719 1.28289 1.12353 1.04995 0.73435 0.77031 0.74515 1.93623 1.84971 1.70025 1.44321 1.93595 1.79962 1.73983 1.48101 1.55535 1.25399 1.79408 1.27190 1.21578 0.92322 0.96859 0.90193 1.21241 0.91370 0.97332 1.00345 1.22065 0.98877 0.94422 1.01395 1.20910 0.88747 0.95648 0.92892 1.44042 1.37053 1.02647 1.47788 1.19169 0.95235 0.98420 1.25244 0.91833 1.25064 0.96434 0.98448 0.99720 1.70032 1.25177 1.19410 1.40192 0.86320 0.80479 0.77811 0.82314 1.21428 1.21585 1.20465 1.20723 0.90144 0.84486 0.99973 1.22227 0.99280 0.97887 0.98186 1.88040 1.62595 1.49646 1.29132 1.23048 0.91761 0.89131 1.03632 0.92747 0.91987 0.92135 0.90390 0.90500 0.83888 0.83856 0.74752 0.92255 0.90233 0.91194 0.92047 0.93124 0.96645 0.92867 0.93697 0.96461 0.89667 0.93131 0.92276 0.88496 0.93916 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.65 37.16 0.36 -0.56 16 2 C -0.13 -0.85 5.63 -26.73 -0.15 -1.00 16 3 C 0.10 0.82 2.23 -26.73 -0.06 0.76 16 4 H 0.08 0.58 7.59 -51.93 -0.39 0.19 16 5 C -0.65 -5.13 5.77 37.16 0.21 -4.92 16 6 S 2.61 29.90 5.27 -107.50 -0.57 29.34 16 7 O -0.94 -14.10 17.15 -58.80 -1.01 -15.10 16 8 O -0.97 -13.23 18.08 -57.54 -1.04 -14.27 16 9 N -1.11 -12.36 5.40 -10.61 -0.06 -12.42 16 10 C 0.12 1.42 5.52 -4.04 -0.02 1.40 16 11 C -0.08 -1.27 2.18 -90.58 -0.20 -1.47 16 12 C -0.13 -2.21 5.26 -26.62 -0.14 -2.35 16 13 C 0.14 3.02 6.52 -3.71 -0.02 3.00 16 14 N -0.59 -14.77 2.99 -172.32 -0.51 -15.28 16 15 C -0.25 -6.91 9.57 -15.06 -0.14 -7.06 16 16 H 0.06 1.73 7.88 -52.48 -0.41 1.32 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 18 N -0.90 -26.13 11.27 55.49 0.63 -25.51 16 19 Si 0.90 21.73 29.59 -169.99 -5.03 16.71 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.17 4.00 5.29 -3.71 -0.02 3.98 16 24 C -0.14 -2.41 5.36 -26.61 -0.14 -2.55 16 25 O -0.38 -3.84 9.33 -35.25 -0.33 -4.17 16 26 C 0.02 0.17 10.59 101.05 1.07 1.24 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.39 7.12 -51.92 -0.37 0.02 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.14 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.14 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.42 4.27 8.33 -34.47 -0.29 3.98 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.77 7.50 -51.93 -0.39 0.38 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 2.22 6.15 -51.92 -0.32 1.90 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.04 0.37 8.11 -51.93 -0.42 -0.05 16 49 H 0.05 0.29 7.38 -51.93 -0.38 -0.09 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -34.35 396.85 -10.13 -44.47 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.84 Total: -0.19 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 0.66 Total: -9.55 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.05 Total: -53.21 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -2.38 Total: -33.54 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 29.90 SS G_CDS: -0.57 Total: 29.34 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.35 -10.13 -44.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660870967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.276 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds