Wall clock time and date at job start Tue Mar 31 2020 18:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47484 * 2 1 4 4 H 1.08999 * 109.47383 * 54.10143 * 3 2 1 5 5 C 1.52998 * 109.47138 * 174.10427 * 3 2 1 6 6 S 1.81396 * 109.47332 * 184.35148 * 5 3 2 7 7 O 1.42098 * 110.54400 * 288.40758 * 6 5 3 8 8 O 1.42098 * 110.54326 * 65.15702 * 6 5 3 9 9 N 1.65601 * 104.45355 * 176.78105 * 6 5 3 10 10 C 1.46503 * 119.99705 * 64.99617 * 9 6 5 11 11 C 1.53005 * 109.46794 * 165.00373 * 10 9 6 12 12 C 1.53039 * 109.46172 * 295.02904 * 11 10 9 13 13 C 1.53186 * 109.31699 * 178.60338 * 12 11 10 14 14 N 1.46925 * 108.76411 * 54.65214 * 13 12 11 15 15 C 1.36936 * 120.63007 * 126.41013 * 14 13 12 16 16 H 1.08004 * 120.00158 * 330.77012 * 15 14 13 17 17 C 1.38816 * 119.99995 * 150.77497 * 15 14 13 18 18 N 1.31618 * 119.99756 * 343.12710 * 17 15 14 19 19 Si 1.86805 * 119.99998 * 163.13531 * 17 15 14 20 20 H 1.48494 * 109.47040 * 89.99467 * 19 17 15 21 21 H 1.48501 * 109.46807 * 209.99898 * 19 17 15 22 22 H 1.48501 * 109.46510 * 329.99634 * 19 17 15 23 23 C 1.46929 * 118.73833 * 306.38562 * 14 13 12 24 24 C 1.53043 * 109.45875 * 174.97373 * 11 10 9 25 25 O 1.42899 * 109.47028 * 294.10324 * 3 2 1 26 26 C 1.42893 * 114.00121 * 113.67135 * 25 3 2 27 27 H 1.08998 * 109.46882 * 299.53916 * 1 2 3 28 28 H 1.09008 * 109.46898 * 59.52873 * 1 2 3 29 29 H 1.08994 * 109.47868 * 179.53408 * 1 2 3 30 30 H 1.09005 * 109.46966 * 239.99474 * 2 1 3 31 31 H 1.09004 * 109.46645 * 120.00438 * 2 1 3 32 32 H 1.09005 * 109.47087 * 304.34746 * 5 3 2 33 33 H 1.09001 * 109.47620 * 64.34661 * 5 3 2 34 34 H 0.97003 * 120.00210 * 245.00661 * 9 6 5 35 35 H 1.09002 * 109.47323 * 284.99867 * 10 9 6 36 36 H 1.08994 * 109.46889 * 45.00508 * 10 9 6 37 37 H 1.08998 * 109.46256 * 55.00261 * 11 10 9 38 38 H 1.09006 * 109.49476 * 298.56808 * 12 11 10 39 39 H 1.08999 * 109.49842 * 58.65922 * 12 11 10 40 40 H 1.09001 * 109.59800 * 294.87094 * 13 12 11 41 41 H 1.08996 * 109.70687 * 174.50911 * 13 12 11 42 42 H 0.96999 * 119.99486 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.59234 * 293.81934 * 23 14 13 44 44 H 1.09010 * 109.69887 * 173.46370 * 23 14 13 45 45 H 1.09000 * 109.49562 * 301.33572 * 24 11 10 46 46 H 1.09004 * 109.49372 * 61.39994 * 24 11 10 47 47 H 1.09002 * 109.47097 * 175.28944 * 26 25 3 48 48 H 1.09002 * 109.47486 * 55.28801 * 26 25 3 49 49 H 1.08998 * 109.47165 * 295.28446 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5931 1.9859 0.8324 5 6 3.5629 1.4449 0.1482 6 16 4.1551 3.1545 0.2774 7 8 4.0449 3.8165 -0.9751 8 8 3.6755 3.7595 1.4704 9 7 5.7867 3.0095 0.5205 10 6 6.6355 2.4377 -0.5278 11 6 8.1019 2.7522 -0.2247 12 6 8.3255 4.2643 -0.3015 13 6 9.7862 4.5783 0.0365 14 7 10.6558 3.7941 -0.8509 15 6 11.6264 4.4076 -1.5970 16 1 11.4923 5.4285 -1.9232 17 6 12.7827 3.7175 -1.9342 18 7 13.1077 2.6205 -1.2836 19 14 13.8775 4.3458 -3.3113 20 1 14.8920 5.2749 -2.7522 21 1 14.5612 3.1994 -3.9621 22 1 13.0492 5.0625 -4.3141 23 6 10.4646 2.3391 -0.9221 24 6 8.9962 2.0502 -1.2492 25 8 1.6801 2.0749 -1.2298 26 6 0.7369 3.1381 -1.0823 27 1 -0.3633 0.5067 0.8941 28 1 -0.3633 0.5212 -0.8858 29 1 -0.3634 -1.0275 -0.0084 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8413 0.8950 1.0472 33 1 4.0135 0.9691 -0.7228 34 1 6.1805 3.3030 1.3571 35 1 6.4949 1.3573 -0.5601 36 1 6.3630 2.8686 -1.4911 37 1 8.3498 2.3989 0.7762 38 1 8.1017 4.6143 -1.3093 39 1 7.6712 4.7655 0.4118 40 1 9.9869 4.3113 1.0741 41 1 9.9771 5.6413 -0.1106 42 1 13.9158 2.1385 -1.5190 43 1 10.7206 1.8894 0.0372 44 1 11.1015 1.9225 -1.7026 45 1 8.8194 0.9753 -1.2103 46 1 8.7656 2.4210 -2.2480 47 1 0.5790 3.6202 -2.0471 48 1 1.1207 3.8682 -0.3697 49 1 -0.2087 2.7369 -0.7177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660870967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:26 Heat of formation + Delta-G solvation = -137.771002 kcal Electronic energy + Delta-G solvation = -27947.020339 eV Core-core repulsion = 24035.462268 eV Total energy + Delta-G solvation = -3911.558071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.71628 -39.60300 -38.15666 -37.01269 -36.63474 -34.75382 -34.32483 -32.31188 -31.51413 -31.29948 -28.06978 -27.67201 -25.54954 -25.05033 -23.73171 -22.67591 -22.28071 -20.84472 -20.21113 -18.86665 -18.38139 -18.08035 -17.62878 -17.20158 -16.77427 -16.50994 -15.93779 -15.71125 -15.64234 -15.39585 -15.28136 -14.80903 -14.79075 -14.29073 -14.22920 -14.01618 -13.84440 -13.59683 -13.39766 -13.20934 -13.16655 -13.05640 -12.98060 -12.89224 -12.73771 -12.53640 -12.36095 -12.27541 -12.16175 -11.98023 -11.83331 -11.81505 -11.64420 -11.49648 -11.14270 -11.08682 -10.70846 -10.52539 -10.26731 -8.63656 -7.87030 -5.32397 -0.74246 1.45825 1.47318 1.57340 1.75999 2.51666 2.56754 2.78431 3.26972 3.28586 3.44820 3.73466 3.74398 3.85961 3.92999 4.00411 4.09059 4.19969 4.31151 4.40579 4.42649 4.46926 4.50675 4.57283 4.63906 4.70915 4.75945 4.79276 4.80569 4.90396 4.93449 4.98916 5.09904 5.10761 5.19194 5.26197 5.34473 5.35833 5.39921 5.45561 5.56971 5.68057 5.83181 6.04414 6.09890 6.41417 7.17387 7.89176 8.40392 9.18949 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026703 B = 0.002326 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.311605 B =12033.366174 C =12224.650230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.126 4.126 3 C 0.083 3.917 4 H 0.084 0.916 5 C -0.624 4.624 6 S 2.609 3.391 7 O -0.984 6.984 8 O -0.994 6.994 9 N -1.114 6.114 10 C 0.122 3.878 11 C -0.077 4.077 12 C -0.120 4.120 13 C 0.139 3.861 14 N -0.612 5.612 15 C -0.264 4.264 16 H 0.059 0.941 17 C -0.049 4.049 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.273 1.273 23 C 0.176 3.824 24 C -0.124 4.124 25 O -0.396 6.396 26 C 0.012 3.988 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.179 0.821 33 H 0.159 0.841 34 H 0.422 0.578 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.016 0.984 41 H 0.045 0.955 42 H 0.250 0.750 43 H -0.001 1.001 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.099 0.901 48 H 0.033 0.967 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.632 -7.782 4.989 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.164 4.164 3 C 0.024 3.976 4 H 0.102 0.898 5 C -0.756 4.756 6 S 2.706 3.294 7 O -0.974 6.974 8 O -0.985 6.985 9 N -0.874 5.874 10 C -0.004 4.004 11 C -0.097 4.097 12 C -0.159 4.159 13 C 0.014 3.986 14 N -0.336 5.336 15 C -0.395 4.395 16 H 0.077 0.923 17 C -0.245 4.245 18 N -0.579 5.579 19 Si 0.793 3.207 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.198 1.198 23 C 0.050 3.950 24 C -0.164 4.164 25 O -0.316 6.316 26 C -0.084 4.084 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.197 0.803 33 H 0.177 0.823 34 H 0.258 0.742 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.117 0.883 48 H 0.052 0.948 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.961 -7.126 4.556 28.257 hybrid contribution 1.421 0.123 -0.096 1.430 sum -25.540 -7.004 4.460 26.856 Atomic orbital electron populations 1.21837 0.94889 1.02843 1.02052 1.21863 0.96966 0.93336 1.04262 1.22122 0.90298 0.97473 0.87731 0.89759 1.30839 1.05496 1.24378 1.14907 1.04734 0.73183 0.78466 0.73045 1.93571 1.85424 1.72595 1.45767 1.93556 1.80251 1.75856 1.48804 1.55357 1.25209 1.79793 1.27044 1.21475 0.89838 0.99145 0.89924 1.21146 0.93222 0.95310 1.00057 1.21942 0.96301 0.96486 1.01139 1.21058 0.90508 0.94802 0.92242 1.44333 1.37212 1.03600 1.48489 1.19452 0.95994 0.98503 1.25521 0.92298 1.25786 0.97855 0.98940 1.01883 1.70172 1.25575 1.20561 1.41544 0.85325 0.78652 0.77149 0.79604 1.21176 1.21559 1.19840 1.20598 0.93211 0.83413 0.97777 1.22027 0.95739 1.00208 0.98405 1.88007 1.63142 1.50037 1.30380 1.23192 0.92492 0.88956 1.03779 0.92143 0.92816 0.91246 0.90641 0.88560 0.80341 0.82331 0.74222 0.88432 0.91244 0.90178 0.93401 0.90778 0.96587 0.93683 0.94065 0.98249 0.93216 0.89948 0.93086 0.88262 0.94794 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.65 71.98 0.69 -0.77 16 2 C -0.13 -1.25 5.63 30.59 0.17 -1.08 16 3 C 0.08 1.17 2.23 30.59 0.07 1.24 16 4 H 0.08 1.06 7.59 -2.39 -0.02 1.04 16 5 C -0.62 -7.65 5.77 71.98 0.42 -7.24 16 6 S 2.61 54.98 5.27 -56.49 -0.30 54.68 16 7 O -0.98 -28.86 17.15 -126.44 -2.17 -31.03 16 8 O -0.99 -25.98 18.08 -127.65 -2.31 -28.29 16 9 N -1.11 -21.71 5.40 -187.48 -1.01 -22.72 16 10 C 0.12 2.60 5.52 86.38 0.48 3.07 16 11 C -0.08 -2.20 2.18 -10.76 -0.02 -2.22 16 12 C -0.12 -3.99 5.26 30.67 0.16 -3.83 16 13 C 0.14 5.86 6.52 86.36 0.56 6.42 16 14 N -0.61 -31.08 2.99 -699.10 -2.09 -33.17 16 15 C -0.26 -14.87 9.57 84.03 0.80 -14.06 16 16 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 17 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 18 N -0.93 -55.25 11.27 21.65 0.24 -55.01 16 19 Si 0.96 45.43 29.59 68.60 2.03 47.46 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 C 0.18 8.24 5.29 86.36 0.46 8.69 16 24 C -0.12 -4.22 5.36 30.67 0.16 -4.06 16 25 O -0.40 -7.49 9.33 -148.96 -1.39 -8.88 16 26 C 0.01 0.19 10.59 113.37 1.20 1.39 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.58 7.12 -2.38 -0.02 0.56 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.18 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.16 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.42 7.53 8.33 -96.74 -0.81 6.72 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.66 7.69 -2.39 -0.02 1.65 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.07 2.12 7.50 -2.39 -0.02 2.10 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.04 1.91 7.93 -2.39 -0.02 1.89 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.05 2.66 6.15 -2.38 -0.01 2.65 16 45 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.03 0.57 8.11 -2.39 -0.02 0.56 16 49 H 0.07 0.76 7.38 -2.39 -0.02 0.74 16 Total: -1.00 -76.70 396.85 -1.31 -78.01 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.11 Total: 13.73 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.57 Total: -14.80 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -2.86 Total: -110.90 kcal Atomic # 8 Polarization: -62.32 SS G_CDS: -5.87 Total: -68.19 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.30 Total: 54.68 kcal Total: -76.70 -1.31 -78.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660870967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.758 kcal (2) G-P(sol) polarization free energy of solvation -76.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds