Wall clock time and date at job start Tue Mar 31 2020 17:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 C 1.50701 * 109.47460 * 119.99995 * 2 1 3 5 5 O 1.21284 * 119.99725 * 119.99879 * 4 2 1 6 6 N 1.34778 * 120.00282 * 300.00200 * 4 2 1 7 7 C 1.46498 * 120.00103 * 179.97438 * 6 4 2 8 8 C 1.53145 * 109.39334 * 119.88655 * 7 6 4 9 9 C 1.54255 * 108.84689 * 66.06597 * 8 7 6 10 10 H 1.08998 * 112.32760 * 187.68858 * 9 8 7 11 11 C 1.54608 * 107.85206 * 312.47024 * 9 8 7 12 12 C 1.53794 * 104.85048 * 88.47036 * 11 9 8 13 13 C 1.54608 * 104.85050 * 359.97438 * 12 11 9 14 14 H 1.08999 * 112.69945 * 146.96119 * 13 12 11 15 15 C 1.53144 * 109.43752 * 240.08598 * 7 6 4 16 16 N 1.48295 * 106.98854 * 64.12639 * 9 8 7 17 17 C 1.36936 * 128.20950 * 107.53704 * 16 9 8 18 18 H 1.07993 * 120.00056 * 215.72725 * 17 16 9 19 19 C 1.38818 * 119.99830 * 35.72003 * 17 16 9 20 20 N 1.31615 * 119.99788 * 177.62056 * 19 17 16 21 21 Si 1.86802 * 120.00077 * 357.61878 * 19 17 16 22 22 H 1.48494 * 109.47226 * 276.11362 * 21 19 17 23 23 H 1.48501 * 109.46870 * 36.11639 * 21 19 17 24 24 H 1.48502 * 109.46809 * 156.11534 * 21 19 17 25 25 C 1.53000 * 109.47376 * 240.00183 * 2 1 3 26 26 F 1.39900 * 109.47149 * 300.00275 * 25 2 1 27 27 F 1.39900 * 109.47125 * 59.99560 * 25 2 1 28 28 F 1.39895 * 109.47579 * 179.97438 * 25 2 1 29 29 H 1.09003 * 109.47068 * 299.99647 * 1 2 3 30 30 H 1.08990 * 109.47239 * 59.99816 * 1 2 3 31 31 H 1.09006 * 109.46904 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47658 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47395 * 300.00562 * 3 2 1 34 34 H 1.09003 * 109.46834 * 60.00210 * 3 2 1 35 35 H 0.97004 * 119.99327 * 359.97438 * 6 4 2 36 36 H 1.09002 * 109.43649 * 359.97438 * 7 6 4 37 37 H 1.09005 * 109.56662 * 185.97211 * 8 7 6 38 38 H 1.08994 * 109.57359 * 306.33474 * 8 7 6 39 39 H 1.08997 * 110.38134 * 207.17077 * 11 9 8 40 40 H 1.09005 * 110.38596 * 329.42777 * 11 9 8 41 41 H 1.09007 * 110.43503 * 241.09905 * 12 11 9 42 42 H 1.09002 * 110.24172 * 118.79520 * 12 11 9 43 43 H 1.08996 * 109.57193 * 174.05117 * 15 7 6 44 44 H 1.09000 * 109.66422 * 53.74619 * 15 7 6 45 45 H 0.97001 * 120.00018 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1948 -0.9410 3.6507 8 6 3.0479 0.0219 4.4817 9 6 2.1443 1.1500 5.0205 10 1 2.7149 1.9403 5.5083 11 6 1.2864 1.6724 3.8450 12 6 0.0328 0.7815 3.8457 13 6 0.2449 -0.2003 5.0210 14 1 -0.6886 -0.4791 5.5099 15 6 1.0029 -1.4235 4.4824 16 7 1.1634 0.5194 5.9366 17 6 1.1142 0.5896 7.3033 18 1 0.7942 -0.2676 7.8769 19 6 1.4758 1.7627 7.9515 20 7 1.3839 1.8458 9.2618 21 14 2.0928 3.2234 6.9639 22 1 3.5449 3.0630 6.6977 23 1 1.3582 3.2955 5.6754 24 1 1.8658 4.4728 7.7339 25 6 2.0400 -0.7212 -1.2492 26 9 1.5737 -2.0402 -1.2493 27 9 1.5736 -0.0617 -2.3915 28 9 3.4390 -0.7207 -1.2496 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.1494 0.5389 2.5436 36 1 2.7996 -1.7976 3.3533 37 1 3.4988 -0.5165 5.3154 38 1 3.8304 0.4500 3.8553 39 1 1.0093 2.7134 4.0107 40 1 1.8280 1.5694 2.9046 41 1 -0.0469 0.2359 2.9054 42 1 -0.8591 1.3858 4.0117 43 1 1.3602 -2.0280 5.3161 44 1 0.3372 -2.0195 3.8581 45 1 1.6362 2.6656 9.7147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661542197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:14 Heat of formation + Delta-G solvation = -103.183203 kcal Electronic energy + Delta-G solvation = -32298.338745 eV Core-core repulsion = 27710.979822 eV Total energy + Delta-G solvation = -4587.358923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.13845 -48.61202 -48.58315 -42.92446 -40.29333 -36.56323 -35.95084 -34.12991 -32.83817 -32.28143 -31.32076 -28.50675 -27.20727 -26.56252 -25.16739 -24.57530 -22.87551 -21.87987 -21.41528 -20.91341 -19.71720 -19.36288 -19.08328 -18.28910 -18.01540 -17.49409 -16.35663 -16.25073 -15.70878 -15.45046 -15.40571 -15.31649 -15.17810 -14.99231 -14.86930 -14.77151 -14.71320 -14.56730 -14.44543 -14.26413 -14.06452 -13.73735 -13.63780 -13.53684 -13.31361 -13.23311 -12.90575 -12.75804 -12.45400 -12.36489 -12.29918 -12.08058 -11.97995 -11.90494 -11.38264 -11.24634 -11.04197 -10.88599 -10.64398 -9.82732 -8.82031 -8.13970 -5.60195 1.32062 1.38404 1.41831 1.51450 1.53326 2.02595 2.42977 2.62664 2.98016 3.10176 3.13997 3.16306 3.59335 3.65984 3.70439 3.74399 3.79026 3.97426 4.11424 4.14389 4.21460 4.25469 4.43663 4.54415 4.56117 4.62930 4.66073 4.71027 4.72920 4.84220 4.89019 4.96287 5.04796 5.10401 5.12080 5.13654 5.25241 5.28721 5.38649 5.57785 5.86681 6.17223 6.36900 6.75424 7.05217 7.50886 8.25736 9.04149 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.025178 B = 0.003798 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.793234 B = 7370.562527 C = 7624.949533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.156 4.156 4 C 0.511 3.489 5 O -0.571 6.571 6 N -0.717 5.717 7 C 0.157 3.843 8 C -0.136 4.136 9 C 0.121 3.879 10 H 0.052 0.948 11 C -0.166 4.166 12 C -0.155 4.155 13 C 0.146 3.854 14 H 0.074 0.926 15 C -0.132 4.132 16 N -0.615 5.615 17 C -0.227 4.227 18 H 0.046 0.954 19 C -0.035 4.035 20 N -0.966 5.966 21 Si 0.953 3.047 22 H -0.287 1.287 23 H -0.215 1.215 24 H -0.321 1.321 25 C 0.469 3.531 26 F -0.185 7.185 27 F -0.172 7.172 28 F -0.186 7.186 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.436 0.564 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 0.857 -24.266 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.131 4.131 3 C -0.213 4.213 4 C 0.297 3.703 5 O -0.450 6.450 6 N -0.390 5.390 7 C 0.053 3.947 8 C -0.176 4.176 9 C 0.015 3.985 10 H 0.070 0.930 11 C -0.204 4.204 12 C -0.193 4.193 13 C 0.040 3.960 14 H 0.092 0.908 15 C -0.172 4.172 16 N -0.339 5.339 17 C -0.357 4.357 18 H 0.063 0.937 19 C -0.229 4.229 20 N -0.612 5.612 21 Si 0.784 3.216 22 H -0.216 1.216 23 H -0.138 1.138 24 H -0.251 1.251 25 C 0.414 3.586 26 F -0.167 7.167 27 F -0.153 7.153 28 F -0.168 7.168 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.298 0.702 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.837 0.297 -24.074 24.242 hybrid contribution 0.777 0.414 0.628 1.081 sum -2.060 0.711 -23.446 23.547 Atomic orbital electron populations 1.22136 0.86813 1.05104 1.07066 1.22157 1.02463 0.99419 0.89036 1.22140 1.02765 0.89347 1.07019 1.20445 0.79946 0.84052 0.85899 1.90758 1.39271 1.27735 1.87261 1.48775 1.53015 1.33242 1.03967 1.20732 0.95267 0.94922 0.83805 1.22520 0.97956 0.98081 0.99054 1.22162 0.91523 0.93962 0.90829 0.93035 1.23365 0.96988 1.01013 0.99061 1.23164 0.98268 0.98241 0.99676 1.21826 0.92850 0.91596 0.89734 0.90810 1.22401 0.97375 0.98459 0.98975 1.45370 1.27944 1.60280 1.00293 1.18370 1.41246 0.95717 0.80320 0.93668 1.26100 1.00385 1.00168 0.96276 1.69899 1.53145 1.28692 1.09467 0.85870 0.78164 0.77502 0.80109 1.21564 1.13842 1.25092 1.20090 0.75416 0.77451 0.85600 1.93173 1.88353 1.38355 1.96772 1.93175 1.88354 1.80514 1.53304 1.93171 1.30495 1.96348 1.96776 0.87791 0.87547 0.91007 0.91271 0.87440 0.87978 0.70192 0.89797 0.92438 0.90981 0.90120 0.87034 0.86870 0.89719 0.92454 0.90014 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.13 71.98 0.58 -1.07 16 2 C -0.13 -2.13 0.44 -52.93 -0.02 -2.15 16 3 C -0.16 -1.80 8.13 71.98 0.58 -1.21 16 4 C 0.51 12.26 6.25 87.66 0.55 12.81 16 5 O -0.57 -18.74 14.16 -3.04 -0.04 -18.78 16 6 N -0.72 -15.99 2.56 -442.07 -1.13 -17.12 16 7 C 0.16 4.49 3.15 45.09 0.14 4.63 16 8 C -0.14 -4.40 5.51 31.07 0.17 -4.23 16 9 C 0.12 4.33 2.84 45.62 0.13 4.46 16 10 H 0.05 2.08 3.09 -2.39 -0.01 2.08 16 11 C -0.17 -4.21 5.43 31.41 0.17 -4.04 16 12 C -0.15 -3.59 5.74 31.41 0.18 -3.41 16 13 C 0.15 4.75 4.32 45.41 0.20 4.94 16 14 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 15 C -0.13 -3.89 5.49 30.86 0.17 -3.72 16 16 N -0.62 -26.06 2.52 -636.23 -1.60 -27.66 16 17 C -0.23 -12.41 10.83 84.04 0.91 -11.50 16 18 H 0.05 2.78 8.06 -2.91 -0.02 2.75 16 19 C -0.03 -1.96 5.50 84.86 0.47 -1.49 16 20 N -0.97 -60.05 13.97 21.65 0.30 -59.75 16 21 Si 0.95 43.61 24.63 68.60 1.69 45.30 16 22 H -0.29 -13.00 6.89 99.48 0.69 -12.32 16 23 H -0.22 -8.27 4.38 99.48 0.44 -7.84 16 24 H -0.32 -15.37 7.11 99.48 0.71 -14.66 16 25 C 0.47 10.08 1.95 71.98 0.14 10.23 16 26 F -0.19 -4.72 15.88 44.97 0.71 -4.01 16 27 F -0.17 -3.07 16.28 44.97 0.73 -2.34 16 28 F -0.19 -4.83 15.88 44.97 0.71 -4.12 16 29 H 0.10 0.72 6.48 -2.39 -0.02 0.70 16 30 H 0.11 0.71 7.80 -2.39 -0.02 0.70 16 31 H 0.07 0.90 7.80 -2.38 -0.02 0.89 16 32 H 0.07 0.96 7.80 -2.38 -0.02 0.94 16 33 H 0.11 0.78 7.80 -2.39 -0.02 0.76 16 34 H 0.10 0.82 6.47 -2.39 -0.02 0.80 16 35 H 0.44 8.01 1.04 -116.57 -0.12 7.89 16 36 H 0.08 2.63 6.90 -2.39 -0.02 2.61 16 37 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 2.03 6.44 -2.39 -0.02 2.02 16 40 H 0.11 2.16 4.08 -2.38 -0.01 2.15 16 41 H 0.11 1.92 4.07 -2.38 -0.01 1.91 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.13 332.96 6.38 -65.76 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.63 Total: 18.47 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 4.37 Total: 4.25 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -2.43 Total: -104.53 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.04 Total: -18.78 kcal Atomic # 9 Polarization: -12.63 SS G_CDS: 2.16 Total: -10.46 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.69 Total: 45.30 kcal Total: -72.13 6.38 -65.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661542197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.427 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds