Wall clock time and date at job start Tue Mar 31 2020 18:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47217 * 2 1 4 4 N 1.46502 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99764 * 264.11510 * 4 3 2 6 6 H 1.08004 * 120.00157 * 188.00725 * 5 4 3 7 7 C 1.38818 * 120.00239 * 8.01164 * 5 4 3 8 8 N 1.31622 * 119.99719 * 25.64715 * 7 5 4 9 9 Si 1.86796 * 120.00109 * 205.65049 * 7 5 4 10 10 H 1.48498 * 109.47379 * 84.98476 * 9 7 5 11 11 H 1.48494 * 109.47250 * 204.98758 * 9 7 5 12 12 H 1.48504 * 109.47189 * 324.98455 * 9 7 5 13 13 C 1.46501 * 120.00052 * 84.10716 * 4 3 2 14 14 C 1.52997 * 109.47217 * 270.00324 * 13 4 3 15 15 N 1.46507 * 109.46913 * 180.02562 * 14 13 4 16 16 C 1.34772 * 120.00014 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00041 * 0.02562 * 16 15 14 18 18 C 1.47612 * 120.00131 * 180.02562 * 16 15 14 19 19 C 1.39699 * 120.09579 * 359.97438 * 18 16 15 20 20 C 1.37723 * 119.96737 * 180.09366 * 19 18 16 21 21 C 1.39014 * 120.26876 * 359.95130 * 20 19 18 22 22 C 1.39266 * 120.04279 * 359.95045 * 21 20 19 23 23 C 1.38288 * 119.96140 * 0.12892 * 22 21 20 24 24 O 1.36138 * 120.75969 * 180.39224 * 22 21 20 25 25 C 1.43175 * 116.68572 * 342.62478 * 24 22 21 26 26 C 1.53461 * 108.22781 * 46.26145 * 25 24 22 27 27 O 1.35959 * 119.24549 * 179.80437 * 21 20 19 28 28 H 1.09010 * 109.46833 * 60.00129 * 1 2 3 29 29 H 1.08998 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47462 * 300.00745 * 1 2 3 31 31 H 1.08995 * 109.46970 * 239.99439 * 2 1 3 32 32 H 1.09002 * 109.46505 * 119.99986 * 2 1 3 33 33 H 1.08995 * 109.47609 * 59.99830 * 3 2 1 34 34 H 1.09002 * 109.47372 * 299.99455 * 3 2 1 35 35 H 0.96998 * 119.99609 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46757 * 150.00327 * 13 4 3 37 37 H 1.08994 * 109.46867 * 30.01053 * 13 4 3 38 38 H 1.08999 * 109.47086 * 60.00680 * 14 13 4 39 39 H 1.08998 * 109.47015 * 299.99724 * 14 13 4 40 40 H 0.96998 * 119.99816 * 0.02562 * 15 14 13 41 41 H 1.07999 * 120.01922 * 0.11892 * 19 18 16 42 42 H 1.07999 * 119.86845 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.02357 * 180.16844 * 23 22 21 44 44 H 1.09004 * 109.70684 * 286.57867 * 25 24 22 45 45 H 1.08996 * 109.71121 * 165.95242 * 25 24 22 46 46 H 1.08998 * 109.70116 * 180.52269 * 26 25 24 47 47 H 1.08995 * 109.73781 * 59.92982 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.5642 1.1806 6 1 5.2613 1.6943 1.1722 7 6 3.5047 1.5204 2.3875 8 7 2.3545 0.8858 2.4690 9 14 4.2161 2.3620 3.8957 10 1 3.8293 3.7957 3.8913 11 1 3.6881 1.7107 5.1213 12 1 5.6967 2.2487 3.8738 13 6 4.2381 1.3120 -1.2611 14 6 4.4932 -0.1682 -1.5520 15 7 5.2268 -0.2986 -2.8135 16 6 5.5645 -1.5195 -3.2736 17 8 5.2599 -2.5128 -2.6421 18 6 6.3041 -1.6508 -4.5443 19 6 6.6546 -0.5109 -5.2718 20 6 7.3430 -0.6366 -6.4580 21 6 7.6924 -1.8945 -6.9355 22 6 7.3477 -3.0347 -6.2139 23 6 6.6551 -2.9151 -5.0230 24 8 7.6894 -4.2732 -6.6639 25 6 8.0550 -4.3776 -8.0443 26 6 9.0293 -3.2376 -8.3703 27 8 8.3684 -1.9946 -8.1109 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 1.8761 0.8555 3.3122 36 1 5.1905 1.8365 -1.1838 37 1 3.6494 1.7452 -2.0697 38 1 3.5408 -0.6927 -1.6294 39 1 5.0819 -0.6012 -0.7434 40 1 5.4701 0.4939 -3.3171 41 1 6.3863 0.4685 -4.9041 42 1 7.6129 0.2457 -7.0194 43 1 6.3896 -3.7985 -4.4612 44 1 7.1652 -4.2905 -8.6678 45 1 8.5386 -5.3376 -8.2249 46 1 9.3167 -3.2889 -9.4205 47 1 9.9162 -3.3204 -7.7422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691198232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:45 Heat of formation + Delta-G solvation = -54.450677 kcal Electronic energy + Delta-G solvation = -28301.149680 eV Core-core repulsion = 24257.760698 eV Total energy + Delta-G solvation = -4043.388982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60832 -39.66668 -37.63346 -37.45095 -36.50628 -34.43590 -31.98854 -31.82477 -31.18128 -30.98530 -29.18042 -27.61107 -25.49307 -25.38895 -23.90827 -22.81116 -22.07588 -20.81471 -20.32046 -19.81770 -19.07496 -17.97717 -17.58236 -16.82330 -16.52990 -15.81832 -15.63754 -15.31552 -15.03012 -14.87465 -14.75942 -14.15600 -14.10565 -13.96827 -13.88853 -13.55852 -13.49859 -12.93490 -12.76673 -12.63742 -12.37410 -12.13738 -11.56987 -11.49257 -11.44856 -11.29092 -11.02304 -10.85827 -10.83875 -10.60268 -10.38024 -9.95629 -9.91012 -9.84079 -9.63462 -9.21137 -8.97597 -8.65004 -8.37655 -8.32095 -6.92524 -5.76960 -3.08513 0.61912 1.01821 2.54013 2.78769 2.89775 3.40441 3.44856 3.49113 3.51646 3.73214 3.77785 4.23796 4.36006 4.45349 4.51488 4.69970 4.76246 4.86600 4.99755 5.03174 5.09717 5.32591 5.49690 5.55948 5.77182 5.82646 5.84966 5.92735 6.05622 6.20078 6.21549 6.25310 6.31200 6.50148 6.56229 6.67467 6.70519 6.71059 6.89127 7.02830 7.03567 7.21543 7.29920 7.68706 7.77972 7.81178 8.12879 8.34728 8.47012 9.23129 9.84812 10.29044 11.26403 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.002150 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.599011 B =13020.174579 C =13446.649683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.256 4.256 6 H 0.075 0.925 7 C 0.000 4.000 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.718 5.718 16 C 0.553 3.447 17 O -0.537 6.537 18 C -0.123 4.123 19 C -0.081 4.081 20 C -0.121 4.121 21 C 0.070 3.930 22 C 0.040 3.960 23 C -0.054 4.054 24 O -0.304 6.304 25 C 0.020 3.980 26 C 0.019 3.981 27 O -0.305 6.305 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.003 0.997 35 H 0.252 0.748 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.394 0.606 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.257 -5.093 -23.153 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.384 4.384 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.036 4.036 15 N -0.369 5.369 16 C 0.339 3.661 17 O -0.415 6.415 18 C -0.127 4.127 19 C -0.099 4.099 20 C -0.139 4.139 21 C 0.024 3.976 22 C -0.005 4.005 23 C -0.074 4.074 24 O -0.219 6.219 25 C -0.056 4.056 26 C -0.056 4.056 27 O -0.220 6.220 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.021 0.979 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.229 0.771 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.167 0.833 44 H 0.096 0.904 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.938 -5.819 -22.531 25.303 hybrid contribution 0.579 0.406 0.346 0.787 sum 10.517 -5.412 -22.185 25.141 Atomic orbital electron populations 1.21627 0.98584 0.99318 0.99981 1.22228 0.92912 1.00491 1.01417 1.20933 0.81520 0.94530 0.98416 1.44248 1.01917 1.83566 1.01395 1.19266 0.92248 1.43459 0.83471 0.90748 1.24730 0.97600 1.00112 0.97296 1.70167 1.17170 1.41163 1.25003 0.86369 0.78403 0.79872 0.82606 1.21615 1.21992 1.20781 1.20960 0.96402 0.91680 0.89541 1.22787 0.95957 1.01746 0.83121 1.46110 1.57870 1.07301 1.25622 1.18057 0.79533 0.83986 0.84544 1.90800 1.54814 1.37128 1.58751 1.19810 1.02944 0.93149 0.96797 1.21103 0.96894 0.98330 0.93616 1.20339 1.01957 0.94867 0.96749 1.19138 0.96966 0.93663 0.87832 1.18717 1.01498 0.83576 0.96668 1.20499 0.94861 0.98394 0.93608 1.86365 1.83199 1.25815 1.26527 1.23647 0.99426 1.00885 0.81628 1.23668 0.94963 0.82792 1.04180 1.86271 1.64766 1.36404 1.34522 0.95098 0.94814 0.92998 0.96004 0.88340 0.89200 0.97852 0.93720 0.93161 0.93855 0.91397 0.91319 0.77138 0.84338 0.84109 0.83349 0.90352 0.85904 0.85916 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.91 37.16 0.37 -2.30 16 2 C -0.13 -2.97 5.60 -26.73 -0.15 -3.12 16 3 C 0.17 3.99 4.92 -4.04 -0.02 3.97 16 4 N -0.59 -14.02 2.54 -173.24 -0.44 -14.46 16 5 C -0.26 -6.71 9.70 -15.06 -0.15 -6.85 16 6 H 0.07 1.93 7.94 -52.48 -0.42 1.51 16 7 C 0.00 0.01 4.89 -17.43 -0.09 -0.07 16 8 N -0.89 -24.29 8.62 55.49 0.48 -23.81 16 9 Si 0.90 21.31 29.62 -169.99 -5.04 16.27 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.14 2.72 5.82 -4.04 -0.02 2.70 16 14 C 0.09 1.69 5.88 -4.04 -0.02 1.67 16 15 N -0.72 -10.85 5.51 -61.32 -0.34 -11.19 16 16 C 0.55 9.12 7.76 -12.44 -0.10 9.02 16 17 O -0.54 -11.15 16.34 5.29 0.09 -11.06 16 18 C -0.12 -1.63 5.87 -104.99 -0.62 -2.25 16 19 C -0.08 -0.82 9.53 -39.22 -0.37 -1.19 16 20 C -0.12 -1.16 9.94 -39.48 -0.39 -1.55 16 21 C 0.07 0.75 6.51 -38.91 -0.25 0.49 16 22 C 0.04 0.48 6.48 -39.18 -0.25 0.22 16 23 C -0.05 -0.72 9.50 -39.03 -0.37 -1.09 16 24 O -0.30 -3.27 10.42 -32.94 -0.34 -3.62 16 25 C 0.02 0.12 7.26 37.40 0.27 0.39 16 26 C 0.02 0.11 7.26 37.40 0.27 0.38 16 27 O -0.31 -2.85 10.40 -32.37 -0.34 -3.19 16 28 H 0.03 0.54 8.14 -51.92 -0.42 0.11 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.48 5.98 -51.93 -0.31 0.17 16 32 H 0.10 2.59 6.33 -51.93 -0.33 2.26 16 33 H 0.09 2.34 5.85 -51.93 -0.30 2.04 16 34 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 35 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 37 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 38 H 0.07 1.43 5.92 -51.93 -0.31 1.13 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.39 4.51 6.49 -40.82 -0.27 4.24 16 41 H 0.14 1.04 6.39 -52.49 -0.34 0.71 16 42 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.15 2.09 7.64 -52.49 -0.40 1.69 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -32.21 379.61 -8.95 -41.16 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.85 Total: 3.75 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.89 Total: 0.43 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.30 Total: -49.47 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.59 Total: -17.87 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.04 Total: 16.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.21 -8.95 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691198232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.290 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds