Wall clock time and date at job start Tue Mar 31 2020 18:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47217 * 2 1 4 4 N 1.46502 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99764 * 264.11510 * 4 3 2 6 6 H 1.08004 * 120.00157 * 188.00725 * 5 4 3 7 7 C 1.38818 * 120.00239 * 8.01164 * 5 4 3 8 8 N 1.31622 * 119.99719 * 25.64715 * 7 5 4 9 9 Si 1.86796 * 120.00109 * 205.65049 * 7 5 4 10 10 H 1.48498 * 109.47379 * 84.98476 * 9 7 5 11 11 H 1.48494 * 109.47250 * 204.98758 * 9 7 5 12 12 H 1.48504 * 109.47189 * 324.98455 * 9 7 5 13 13 C 1.46501 * 120.00052 * 84.10716 * 4 3 2 14 14 C 1.52997 * 109.47217 * 270.00324 * 13 4 3 15 15 N 1.46507 * 109.46913 * 180.02562 * 14 13 4 16 16 C 1.34772 * 120.00014 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00041 * 0.02562 * 16 15 14 18 18 C 1.47612 * 120.00131 * 180.02562 * 16 15 14 19 19 C 1.39699 * 120.09579 * 359.97438 * 18 16 15 20 20 C 1.37723 * 119.96737 * 180.09366 * 19 18 16 21 21 C 1.39014 * 120.26876 * 359.95130 * 20 19 18 22 22 C 1.39266 * 120.04279 * 359.95045 * 21 20 19 23 23 C 1.38288 * 119.96140 * 0.12892 * 22 21 20 24 24 O 1.36138 * 120.75969 * 180.39224 * 22 21 20 25 25 C 1.43175 * 116.68572 * 342.62478 * 24 22 21 26 26 C 1.53461 * 108.22781 * 46.26145 * 25 24 22 27 27 O 1.35959 * 119.24549 * 179.80437 * 21 20 19 28 28 H 1.09010 * 109.46833 * 60.00129 * 1 2 3 29 29 H 1.08998 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47462 * 300.00745 * 1 2 3 31 31 H 1.08995 * 109.46970 * 239.99439 * 2 1 3 32 32 H 1.09002 * 109.46505 * 119.99986 * 2 1 3 33 33 H 1.08995 * 109.47609 * 59.99830 * 3 2 1 34 34 H 1.09002 * 109.47372 * 299.99455 * 3 2 1 35 35 H 0.96998 * 119.99609 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46757 * 150.00327 * 13 4 3 37 37 H 1.08994 * 109.46867 * 30.01053 * 13 4 3 38 38 H 1.08999 * 109.47086 * 60.00680 * 14 13 4 39 39 H 1.08998 * 109.47015 * 299.99724 * 14 13 4 40 40 H 0.96998 * 119.99816 * 0.02562 * 15 14 13 41 41 H 1.07999 * 120.01922 * 0.11892 * 19 18 16 42 42 H 1.07999 * 119.86845 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.02357 * 180.16844 * 23 22 21 44 44 H 1.09004 * 109.70684 * 286.57867 * 25 24 22 45 45 H 1.08996 * 109.71121 * 165.95242 * 25 24 22 46 46 H 1.08998 * 109.70116 * 180.52269 * 26 25 24 47 47 H 1.08995 * 109.73781 * 59.92982 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.5642 1.1806 6 1 5.2613 1.6943 1.1722 7 6 3.5047 1.5204 2.3875 8 7 2.3545 0.8858 2.4690 9 14 4.2161 2.3620 3.8957 10 1 3.8293 3.7957 3.8913 11 1 3.6881 1.7107 5.1213 12 1 5.6967 2.2487 3.8738 13 6 4.2381 1.3120 -1.2611 14 6 4.4932 -0.1682 -1.5520 15 7 5.2268 -0.2986 -2.8135 16 6 5.5645 -1.5195 -3.2736 17 8 5.2599 -2.5128 -2.6421 18 6 6.3041 -1.6508 -4.5443 19 6 6.6546 -0.5109 -5.2718 20 6 7.3430 -0.6366 -6.4580 21 6 7.6924 -1.8945 -6.9355 22 6 7.3477 -3.0347 -6.2139 23 6 6.6551 -2.9151 -5.0230 24 8 7.6894 -4.2732 -6.6639 25 6 8.0550 -4.3776 -8.0443 26 6 9.0293 -3.2376 -8.3703 27 8 8.3684 -1.9946 -8.1109 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 1.8761 0.8555 3.3122 36 1 5.1905 1.8365 -1.1838 37 1 3.6494 1.7452 -2.0697 38 1 3.5408 -0.6927 -1.6294 39 1 5.0819 -0.6012 -0.7434 40 1 5.4701 0.4939 -3.3171 41 1 6.3863 0.4685 -4.9041 42 1 7.6129 0.2457 -7.0194 43 1 6.3896 -3.7985 -4.4612 44 1 7.1652 -4.2905 -8.6678 45 1 8.5386 -5.3376 -8.2249 46 1 9.3167 -3.2889 -9.4205 47 1 9.9162 -3.3204 -7.7422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691198232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:44 Heat of formation + Delta-G solvation = -75.061090 kcal Electronic energy + Delta-G solvation = -28302.043414 eV Core-core repulsion = 24257.760698 eV Total energy + Delta-G solvation = -4044.282716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35336 -40.90329 -38.53887 -38.35013 -38.12104 -35.96374 -33.72901 -33.31146 -32.29532 -31.83803 -30.19149 -28.96203 -27.34646 -26.18545 -25.29289 -23.97768 -22.99278 -22.44921 -21.82501 -21.15666 -19.92684 -18.94914 -18.65519 -18.31928 -17.46173 -17.08930 -16.66204 -16.61342 -16.38036 -15.99903 -15.65388 -15.48145 -15.39675 -15.10093 -14.94411 -14.89193 -14.62316 -14.42131 -14.24802 -14.06932 -13.54651 -13.40514 -13.06065 -12.84432 -12.78451 -12.63361 -12.39052 -12.23922 -12.16406 -12.03059 -11.79584 -11.68340 -11.55496 -11.53344 -11.16635 -11.05090 -10.30997 -10.11329 -9.79004 -9.22801 -8.83975 -7.77643 -5.09933 -0.32196 0.18374 1.50823 1.53561 1.59691 1.67801 1.91672 2.08116 2.32646 2.59451 2.70990 3.17959 3.30413 3.57373 3.63449 3.84635 3.92240 4.00350 4.05517 4.10901 4.24971 4.28325 4.35390 4.53543 4.54688 4.58051 4.66371 4.70668 4.72182 4.86884 4.95909 4.98178 4.99246 5.08878 5.15282 5.18551 5.28570 5.37045 5.46906 5.47454 5.54700 5.67738 5.80830 5.89936 6.21267 6.28720 6.38763 6.55795 7.20793 7.24634 7.94654 8.33632 9.23266 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.002150 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.599011 B =13020.174579 C =13446.649683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.175 3.825 4 N -0.607 5.607 5 C -0.262 4.262 6 H 0.074 0.926 7 C -0.049 4.049 8 N -0.909 5.909 9 Si 0.954 3.046 10 H -0.287 1.287 11 H -0.302 1.302 12 H -0.278 1.278 13 C 0.145 3.855 14 C 0.110 3.890 15 N -0.701 5.701 16 C 0.552 3.448 17 O -0.591 6.591 18 C -0.141 4.141 19 C -0.066 4.066 20 C -0.116 4.116 21 C 0.074 3.926 22 C 0.033 3.967 23 C -0.074 4.074 24 O -0.327 6.327 25 C 0.011 3.989 26 C 0.015 3.985 27 O -0.311 6.311 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.245 0.755 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.030 0.970 40 H 0.416 0.584 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.125 0.875 44 H 0.082 0.918 45 H 0.154 0.846 46 H 0.160 0.840 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.581 -3.496 -26.381 29.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.050 3.950 4 N -0.328 5.328 5 C -0.392 4.392 6 H 0.092 0.908 7 C -0.244 4.244 8 N -0.555 5.555 9 Si 0.784 3.216 10 H -0.214 1.214 11 H -0.230 1.230 12 H -0.203 1.203 13 C 0.018 3.982 14 C -0.017 4.017 15 N -0.354 5.354 16 C 0.341 3.659 17 O -0.473 6.473 18 C -0.144 4.144 19 C -0.085 4.085 20 C -0.134 4.134 21 C 0.028 3.972 22 C -0.012 4.012 23 C -0.094 4.094 24 O -0.242 6.242 25 C -0.063 4.063 26 C -0.060 4.060 27 O -0.225 6.225 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.255 0.745 41 H 0.187 0.813 42 H 0.190 0.810 43 H 0.143 0.857 44 H 0.101 0.899 45 H 0.171 0.829 46 H 0.178 0.822 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.297 -4.188 -25.819 28.492 hybrid contribution 0.279 -0.181 1.157 1.204 sum 11.576 -4.368 -24.663 27.593 Atomic orbital electron populations 1.21528 0.96144 1.00301 1.00672 1.22030 0.95074 0.99728 0.99314 1.20821 0.81618 0.94583 0.98025 1.44438 1.02340 1.83775 1.02217 1.19496 0.92392 1.42670 0.84634 0.90849 1.25367 0.98417 1.01040 0.99596 1.70340 1.18166 1.42099 1.24904 0.85472 0.77834 0.78690 0.79572 1.21395 1.22957 1.20295 1.21103 0.97215 0.91380 0.88521 1.22235 0.94498 1.01264 0.83675 1.45781 1.57097 1.08078 1.24395 1.18585 0.78828 0.83321 0.85215 1.90770 1.57029 1.38904 1.60576 1.19514 1.04553 0.94407 0.95975 1.21366 0.95599 0.98307 0.93204 1.20709 1.00761 0.95512 0.96391 1.19351 0.96286 0.93617 0.87953 1.18702 1.01507 0.84656 0.96380 1.20416 0.96395 0.97933 0.94662 1.86332 1.83256 1.25520 1.29120 1.24036 1.00082 1.02811 0.79417 1.24019 0.94388 0.81090 1.06495 1.86268 1.64505 1.38264 1.33480 0.92628 0.93735 0.93958 0.95957 0.92489 0.92084 0.95423 0.94508 0.91633 0.90784 0.93720 0.95149 0.74538 0.81311 0.80974 0.85657 0.89935 0.82891 0.82217 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.91 71.98 0.71 -4.21 16 2 C -0.12 -5.59 5.60 30.59 0.17 -5.42 16 3 C 0.17 8.12 4.92 86.38 0.43 8.55 16 4 N -0.61 -28.70 2.54 -702.01 -1.78 -30.49 16 5 C -0.26 -13.86 9.70 84.04 0.81 -13.05 16 6 H 0.07 3.81 7.94 -2.91 -0.02 3.79 16 7 C -0.05 -2.64 4.89 84.86 0.41 -2.22 16 8 N -0.91 -51.10 8.62 21.65 0.19 -50.91 16 9 Si 0.95 44.55 29.62 68.60 2.03 46.58 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.15 5.32 5.82 86.38 0.50 5.82 16 14 C 0.11 4.22 5.88 86.38 0.51 4.73 16 15 N -0.70 -20.69 5.51 -466.19 -2.57 -23.26 16 16 C 0.55 18.61 7.76 86.72 0.67 19.29 16 17 O -0.59 -26.07 16.34 -3.99 -0.07 -26.14 16 18 C -0.14 -3.70 5.87 -20.10 -0.12 -3.82 16 19 C -0.07 -1.17 9.53 22.50 0.21 -0.95 16 20 C -0.12 -1.84 9.94 22.33 0.22 -1.61 16 21 C 0.07 1.43 6.51 22.70 0.15 1.58 16 22 C 0.03 0.76 6.48 22.53 0.15 0.91 16 23 C -0.07 -2.06 9.50 22.63 0.22 -1.84 16 24 O -0.33 -6.90 10.42 -82.92 -0.86 -7.76 16 25 C 0.01 0.11 7.26 72.14 0.52 0.64 16 26 C 0.01 0.12 7.26 72.14 0.52 0.65 16 27 O -0.31 -4.85 10.40 -80.88 -0.84 -5.69 16 28 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.02 0.99 5.98 -2.39 -0.01 0.98 16 32 H 0.06 3.11 6.33 -2.39 -0.02 3.09 16 33 H 0.06 3.21 5.85 -2.39 -0.01 3.20 16 34 H 0.03 1.14 7.98 -2.39 -0.02 1.12 16 35 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 36 H 0.07 2.22 8.03 -2.38 -0.02 2.20 16 37 H 0.07 2.29 7.95 -2.39 -0.02 2.27 16 38 H 0.04 1.94 5.92 -2.39 -0.01 1.92 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.42 8.42 6.49 -92.71 -0.60 7.81 16 41 H 0.17 1.83 6.39 -2.91 -0.02 1.81 16 42 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.13 3.93 7.64 -2.91 -0.02 3.91 16 44 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -74.20 379.61 2.59 -71.61 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.39 Total: 17.04 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.10 Total: 9.03 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -4.16 Total: -104.65 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.77 Total: -39.60 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.20 2.59 -71.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691198232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.453 kcal (2) G-P(sol) polarization free energy of solvation -74.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds