Wall clock time and date at job start Tue Mar 31 2020 17:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50701 * 120.00008 * 2 1 4 4 C 1.32989 * 120.00094 * 179.97438 * 2 1 3 5 5 C 1.47104 * 119.99929 * 352.54515 * 4 2 1 6 6 O 1.21613 * 119.99816 * 0.81913 * 5 4 2 7 7 N 1.34773 * 120.00157 * 180.81588 * 5 4 2 8 8 C 1.46931 * 120.62941 * 5.06955 * 7 5 4 9 9 C 1.53196 * 108.77285 * 233.58246 * 8 7 5 10 10 C 1.53107 * 109.33047 * 305.36503 * 9 8 7 11 11 H 1.08996 * 109.44888 * 301.34659 * 10 9 8 12 12 C 1.53001 * 109.50155 * 181.36969 * 10 9 8 13 13 F 1.39899 * 109.47157 * 303.51881 * 12 10 9 14 14 F 1.39897 * 109.47406 * 63.52545 * 12 10 9 15 15 F 1.39904 * 109.46965 * 183.52428 * 12 10 9 16 16 C 1.53040 * 109.50286 * 61.34200 * 10 9 8 17 17 H 1.09001 * 109.49395 * 178.68588 * 16 10 9 18 18 C 1.52994 * 109.49894 * 58.62289 * 16 10 9 19 19 N 1.46504 * 109.47120 * 179.72228 * 18 16 10 20 20 C 1.36939 * 119.99531 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00524 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99469 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00023 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99938 * 179.72728 * 22 20 19 25 25 H 1.48502 * 109.47336 * 89.99725 * 24 22 20 26 26 H 1.48499 * 109.47259 * 209.99974 * 24 22 20 27 27 H 1.48496 * 109.46957 * 330.00033 * 24 22 20 28 28 C 1.46927 * 120.63533 * 185.03945 * 7 5 4 29 29 H 1.08998 * 109.47425 * 263.97035 * 1 2 3 30 30 H 1.09004 * 109.47318 * 23.96852 * 1 2 3 31 31 H 1.08998 * 109.47521 * 143.96731 * 1 2 3 32 32 H 1.09001 * 109.46690 * 269.99802 * 3 2 1 33 33 H 1.09002 * 109.47219 * 29.99288 * 3 2 1 34 34 H 1.08997 * 109.47016 * 149.99979 * 3 2 1 35 35 H 1.07998 * 120.00050 * 172.54902 * 4 2 1 36 36 H 1.08999 * 109.58585 * 353.36623 * 8 7 5 37 37 H 1.08992 * 109.58912 * 113.79837 * 8 7 5 38 38 H 1.08997 * 109.49555 * 65.31468 * 9 8 7 39 39 H 1.08998 * 109.49800 * 185.37756 * 9 8 7 40 40 H 1.09001 * 109.47708 * 59.71659 * 18 16 10 41 41 H 1.09005 * 109.47028 * 299.71745 * 18 16 10 42 42 H 0.96996 * 120.00028 * 359.97438 * 19 18 16 43 43 H 0.96999 * 119.99673 * 179.97438 * 23 22 20 44 44 H 1.09007 * 109.58000 * 6.62949 * 28 7 5 45 45 H 1.08999 * 109.70553 * 246.27809 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1517 0.0005 5 6 1.4458 -2.4202 0.1664 6 8 0.2357 -2.4167 0.2881 7 7 2.1214 -3.5862 0.1834 8 6 3.5902 -3.6009 0.1489 9 6 4.0473 -4.4996 -1.0045 10 6 3.4082 -5.8827 -0.8532 11 1 3.6959 -6.3125 0.1062 12 6 3.8890 -6.7940 -1.9843 13 9 3.5915 -6.2036 -3.2173 14 9 5.2715 -6.9799 -1.8777 15 9 3.2435 -8.0318 -1.8922 16 6 1.8848 -5.7513 -0.9169 17 1 1.4307 -6.7386 -0.8327 18 6 1.4822 -5.1161 -2.2493 19 7 0.0234 -4.9967 -2.3124 20 6 -0.5717 -4.4523 -3.4191 21 1 0.0343 -4.1114 -4.2455 22 6 -1.9540 -4.3397 -3.4791 23 7 -2.6926 -4.7565 -2.4725 24 14 -2.7654 -3.5902 -4.9854 25 1 -3.0582 -4.6593 -5.9736 26 1 -4.0316 -2.9249 -4.5862 27 1 -1.8516 -2.5904 -5.5941 28 6 1.4032 -4.8669 0.2374 29 1 -0.3634 -0.1079 1.0219 30 1 -0.3634 0.9391 -0.4175 31 1 -0.3634 -0.8310 -0.6045 32 1 2.4421 1.6197 -1.0277 33 1 1.6714 2.0648 0.5137 34 1 3.2129 1.1748 0.5138 35 1 3.2451 -1.1557 -0.1208 36 1 3.9622 -2.5884 -0.0073 37 1 3.9739 -3.9921 1.0911 38 1 3.7402 -4.0588 -1.9528 39 1 5.1328 -4.5957 -0.9826 40 1 1.8314 -5.7420 -3.0705 41 1 1.9316 -4.1263 -2.3304 42 1 -0.5208 -5.3032 -1.5703 43 1 -3.6584 -4.6775 -2.5143 44 1 0.3321 -4.6895 0.1396 45 1 1.6063 -5.3624 1.1868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692150727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:30 Heat of formation + Delta-G solvation = -150.431997 kcal Electronic energy + Delta-G solvation = -31396.780889 eV Core-core repulsion = 26807.373105 eV Total energy + Delta-G solvation = -4589.407784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.03475 -47.52457 -47.44033 -40.20592 -38.04659 -35.19614 -34.60440 -33.30794 -31.72447 -29.97891 -28.33769 -27.63587 -26.94274 -25.34960 -23.59629 -23.27918 -21.96921 -20.94860 -19.01847 -18.31512 -18.23092 -17.97119 -17.53257 -16.88143 -16.55550 -15.42036 -15.20097 -15.04035 -14.50639 -14.32054 -14.22287 -14.09817 -13.88456 -13.84029 -13.71249 -13.65375 -13.54487 -13.50613 -13.11534 -12.86098 -12.76212 -12.50949 -12.34249 -12.26799 -12.05385 -11.78391 -11.54648 -11.32512 -11.17065 -10.88351 -10.78905 -10.59166 -10.50601 -10.36097 -9.93574 -9.56476 -9.06656 -8.94756 -8.72076 -8.29241 -6.75961 -5.63165 -2.90383 1.58589 2.84812 3.25562 3.50886 3.55453 3.57427 3.65457 3.88822 4.01402 4.12020 4.63115 4.65674 4.69789 4.85150 4.91897 4.97578 5.05682 5.14763 5.23249 5.33456 5.43268 5.46419 5.51479 5.61349 5.65322 5.70170 5.75103 5.84082 5.85265 5.91146 6.09372 6.15774 6.20593 6.31427 6.54269 6.62701 6.77245 6.82341 6.86874 6.91628 7.75419 7.80822 8.54686 8.65896 9.66033 10.23449 10.57794 11.59695 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.007574 B = 0.006187 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.858523 B = 4524.839383 C = 7257.892045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 C -0.125 4.125 4 C -0.238 4.238 5 C 0.547 3.453 6 O -0.511 6.511 7 N -0.609 5.609 8 C 0.115 3.885 9 C -0.140 4.140 10 C -0.122 4.122 11 H 0.111 0.889 12 C 0.454 3.546 13 F -0.170 7.170 14 F -0.191 7.191 15 F -0.182 7.182 16 C -0.112 4.112 17 H 0.094 0.906 18 C 0.142 3.858 19 N -0.724 5.724 20 C -0.233 4.233 21 H 0.066 0.934 22 C -0.011 4.011 23 N -0.929 5.929 24 Si 0.902 3.098 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.284 1.284 28 C 0.127 3.873 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.023 0.977 42 H 0.383 0.617 43 H 0.253 0.747 44 H 0.114 0.886 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.954 4.052 8.528 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.035 4.035 3 C -0.182 4.182 4 C -0.259 4.259 5 C 0.339 3.661 6 O -0.388 6.388 7 N -0.344 5.344 8 C -0.008 4.008 9 C -0.178 4.178 10 C -0.142 4.142 11 H 0.130 0.870 12 C 0.400 3.600 13 F -0.151 7.151 14 F -0.172 7.172 15 F -0.163 7.163 16 C -0.132 4.132 17 H 0.112 0.888 18 C 0.015 3.985 19 N -0.369 5.369 20 C -0.364 4.364 21 H 0.084 0.916 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.734 3.266 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.210 1.210 28 C 0.004 3.996 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.217 0.783 43 H 0.063 0.937 44 H 0.132 0.868 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.267 4.122 8.414 19.645 hybrid contribution -0.312 -0.026 -0.904 0.957 sum 16.955 4.095 7.510 18.991 Atomic orbital electron populations 1.21263 0.90607 1.03227 1.03605 1.22567 0.97118 0.94209 0.89627 1.20990 0.99781 0.94679 1.02732 1.22414 0.99888 0.92354 1.11196 1.18438 0.87136 0.83756 0.76812 1.90832 1.13575 1.86441 1.47926 1.47820 1.05818 1.06121 1.74610 1.21637 0.80867 1.00787 0.97525 1.22096 1.00454 0.93438 1.01787 1.22451 0.99227 0.95970 0.96556 0.87042 1.20635 0.74629 0.80227 0.84535 1.93151 1.92142 1.83469 1.46337 1.93146 1.32156 1.95673 1.96260 1.93182 1.81447 1.45411 1.96298 1.21818 0.90784 1.01443 0.99154 0.88807 1.21172 0.87534 0.97413 0.92378 1.42251 0.99383 1.74693 1.20561 1.19110 0.89769 1.32311 0.95204 0.91612 1.24670 0.96194 1.02110 0.97721 1.69655 1.04428 1.52883 1.30803 0.86260 0.78985 0.78758 0.82608 1.21906 1.21849 1.20958 1.21523 1.00094 0.82377 0.95607 0.90727 0.93020 0.87688 0.90578 0.91074 0.91417 0.85892 0.88998 0.91377 0.89127 0.89872 0.94307 0.95968 0.78314 0.93703 0.86834 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.51 36.00 0.31 -1.71 16 2 C -0.03 -0.44 6.11 -101.17 -0.62 -1.06 16 3 C -0.13 -1.13 10.01 36.01 0.36 -0.77 16 4 C -0.24 -3.22 8.95 -37.81 -0.34 -3.56 16 5 C 0.55 9.37 7.56 -12.67 -0.10 9.27 16 6 O -0.51 -11.01 12.58 5.27 0.07 -10.94 16 7 N -0.61 -8.86 2.40 -174.16 -0.42 -9.28 16 8 C 0.12 1.15 6.35 -3.71 -0.02 1.13 16 9 C -0.14 -1.46 4.77 -26.57 -0.13 -1.58 16 10 C -0.12 -1.44 2.02 -90.54 -0.18 -1.62 16 11 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 12 C 0.45 6.05 2.63 37.16 0.10 6.15 16 13 F -0.17 -2.65 13.28 2.25 0.03 -2.62 16 14 F -0.19 -2.33 16.92 2.25 0.04 -2.29 16 15 F -0.18 -2.66 16.63 2.25 0.04 -2.62 16 16 C -0.11 -1.75 2.15 -90.51 -0.19 -1.95 16 17 H 0.09 1.50 7.68 -51.93 -0.40 1.10 16 18 C 0.14 2.89 4.52 -4.04 -0.02 2.87 16 19 N -0.72 -18.71 5.26 -59.90 -0.31 -19.02 16 20 C -0.23 -6.75 9.99 -15.06 -0.15 -6.90 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 24 Si 0.90 23.39 29.55 -169.99 -5.02 18.37 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 27 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 28 C 0.13 1.99 5.71 -3.71 -0.02 1.97 16 29 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 30 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.10 2.09 5.98 -51.93 -0.31 1.78 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 35 H 0.12 1.26 5.86 -52.49 -0.31 0.95 16 36 H 0.09 0.77 5.30 -51.93 -0.28 0.49 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.14 5.97 -51.93 -0.31 0.83 16 39 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 40 H 0.04 0.83 5.31 -51.93 -0.28 0.56 16 41 H 0.02 0.47 5.98 -51.93 -0.31 0.16 16 42 H 0.38 10.44 6.54 -40.82 -0.27 10.18 16 43 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.11 2.30 5.66 -51.93 -0.29 2.01 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -34.29 358.99 -6.63 -40.91 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.07 Total: 8.58 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.10 Total: 1.83 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.01 Total: -56.63 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.11 Total: -7.53 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.29 -6.63 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692150727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.519 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds