Wall clock time and date at job start Tue Mar 31 2020 17:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50701 * 120.00008 * 2 1 4 4 C 1.32989 * 120.00094 * 179.97438 * 2 1 3 5 5 C 1.47104 * 119.99929 * 352.54515 * 4 2 1 6 6 O 1.21613 * 119.99816 * 0.81913 * 5 4 2 7 7 N 1.34773 * 120.00157 * 180.81588 * 5 4 2 8 8 C 1.46931 * 120.62941 * 5.06955 * 7 5 4 9 9 C 1.53196 * 108.77285 * 233.58246 * 8 7 5 10 10 C 1.53107 * 109.33047 * 305.36503 * 9 8 7 11 11 H 1.08996 * 109.44888 * 301.34659 * 10 9 8 12 12 C 1.53001 * 109.50155 * 181.36969 * 10 9 8 13 13 F 1.39899 * 109.47157 * 303.51881 * 12 10 9 14 14 F 1.39897 * 109.47406 * 63.52545 * 12 10 9 15 15 F 1.39904 * 109.46965 * 183.52428 * 12 10 9 16 16 C 1.53040 * 109.50286 * 61.34200 * 10 9 8 17 17 H 1.09001 * 109.49395 * 178.68588 * 16 10 9 18 18 C 1.52994 * 109.49894 * 58.62289 * 16 10 9 19 19 N 1.46504 * 109.47120 * 179.72228 * 18 16 10 20 20 C 1.36939 * 119.99531 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00524 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99469 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00023 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99938 * 179.72728 * 22 20 19 25 25 H 1.48502 * 109.47336 * 89.99725 * 24 22 20 26 26 H 1.48499 * 109.47259 * 209.99974 * 24 22 20 27 27 H 1.48496 * 109.46957 * 330.00033 * 24 22 20 28 28 C 1.46927 * 120.63533 * 185.03945 * 7 5 4 29 29 H 1.08998 * 109.47425 * 263.97035 * 1 2 3 30 30 H 1.09004 * 109.47318 * 23.96852 * 1 2 3 31 31 H 1.08998 * 109.47521 * 143.96731 * 1 2 3 32 32 H 1.09001 * 109.46690 * 269.99802 * 3 2 1 33 33 H 1.09002 * 109.47219 * 29.99288 * 3 2 1 34 34 H 1.08997 * 109.47016 * 149.99979 * 3 2 1 35 35 H 1.07998 * 120.00050 * 172.54902 * 4 2 1 36 36 H 1.08999 * 109.58585 * 353.36623 * 8 7 5 37 37 H 1.08992 * 109.58912 * 113.79837 * 8 7 5 38 38 H 1.08997 * 109.49555 * 65.31468 * 9 8 7 39 39 H 1.08998 * 109.49800 * 185.37756 * 9 8 7 40 40 H 1.09001 * 109.47708 * 59.71659 * 18 16 10 41 41 H 1.09005 * 109.47028 * 299.71745 * 18 16 10 42 42 H 0.96996 * 120.00028 * 359.97438 * 19 18 16 43 43 H 0.96999 * 119.99673 * 179.97438 * 23 22 20 44 44 H 1.09007 * 109.58000 * 6.62949 * 28 7 5 45 45 H 1.08999 * 109.70553 * 246.27809 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1517 0.0005 5 6 1.4458 -2.4202 0.1664 6 8 0.2357 -2.4167 0.2881 7 7 2.1214 -3.5862 0.1834 8 6 3.5902 -3.6009 0.1489 9 6 4.0473 -4.4996 -1.0045 10 6 3.4082 -5.8827 -0.8532 11 1 3.6959 -6.3125 0.1062 12 6 3.8890 -6.7940 -1.9843 13 9 3.5915 -6.2036 -3.2173 14 9 5.2715 -6.9799 -1.8777 15 9 3.2435 -8.0318 -1.8922 16 6 1.8848 -5.7513 -0.9169 17 1 1.4307 -6.7386 -0.8327 18 6 1.4822 -5.1161 -2.2493 19 7 0.0234 -4.9967 -2.3124 20 6 -0.5717 -4.4523 -3.4191 21 1 0.0343 -4.1114 -4.2455 22 6 -1.9540 -4.3397 -3.4791 23 7 -2.6926 -4.7565 -2.4725 24 14 -2.7654 -3.5902 -4.9854 25 1 -3.0582 -4.6593 -5.9736 26 1 -4.0316 -2.9249 -4.5862 27 1 -1.8516 -2.5904 -5.5941 28 6 1.4032 -4.8669 0.2374 29 1 -0.3634 -0.1079 1.0219 30 1 -0.3634 0.9391 -0.4175 31 1 -0.3634 -0.8310 -0.6045 32 1 2.4421 1.6197 -1.0277 33 1 1.6714 2.0648 0.5137 34 1 3.2129 1.1748 0.5138 35 1 3.2451 -1.1557 -0.1208 36 1 3.9622 -2.5884 -0.0073 37 1 3.9739 -3.9921 1.0911 38 1 3.7402 -4.0588 -1.9528 39 1 5.1328 -4.5957 -0.9826 40 1 1.8314 -5.7420 -3.0705 41 1 1.9316 -4.1263 -2.3304 42 1 -0.5208 -5.3032 -1.5703 43 1 -3.6584 -4.6775 -2.5143 44 1 0.3321 -4.6895 0.1396 45 1 1.6063 -5.3624 1.1868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692150727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:29 Heat of formation + Delta-G solvation = -172.581421 kcal Electronic energy + Delta-G solvation = -31397.741361 eV Core-core repulsion = 26807.373105 eV Total energy + Delta-G solvation = -4590.368255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.12399 -48.61241 -48.54241 -41.39361 -39.28739 -36.40726 -36.22933 -34.69254 -33.32347 -31.64235 -29.38001 -28.62550 -28.28060 -26.92802 -25.09651 -24.48476 -23.41507 -22.10860 -20.23678 -19.45967 -19.40250 -19.21566 -18.86207 -18.49750 -17.69745 -16.83189 -16.53351 -16.32797 -15.93869 -15.65761 -15.61887 -15.34811 -15.10628 -14.98872 -14.90392 -14.76366 -14.71627 -14.64126 -14.37296 -14.10368 -13.91828 -13.81775 -13.69845 -13.30166 -13.17693 -13.04080 -12.92922 -12.79266 -12.59929 -12.31322 -12.25149 -12.22300 -11.96498 -11.79257 -11.57825 -11.51470 -10.88526 -10.34688 -10.04880 -9.41524 -8.92396 -7.93472 -5.20026 0.50569 1.40161 1.43270 1.50963 1.80375 2.15317 2.47489 2.53661 2.84225 2.96837 3.08513 3.39922 3.61795 3.67637 3.78654 3.90978 3.97093 4.03129 4.12602 4.20197 4.31308 4.41479 4.51975 4.60379 4.62378 4.64465 4.70215 4.77862 4.81081 4.88283 4.93011 5.01006 5.10130 5.12526 5.16933 5.26031 5.29090 5.45367 5.55389 5.67974 5.76961 6.27821 6.61862 7.34075 7.43868 8.12107 8.33822 9.30125 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.007574 B = 0.006187 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.858523 B = 4524.839383 C = 7257.892045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.034 4.034 3 C -0.118 4.118 4 C -0.245 4.245 5 C 0.529 3.471 6 O -0.574 6.574 7 N -0.607 5.607 8 C 0.110 3.890 9 C -0.136 4.136 10 C -0.111 4.111 11 H 0.152 0.848 12 C 0.452 3.548 13 F -0.187 7.187 14 F -0.179 7.179 15 F -0.192 7.192 16 C -0.103 4.103 17 H 0.087 0.913 18 C 0.145 3.855 19 N -0.735 5.735 20 C -0.238 4.238 21 H 0.066 0.934 22 C -0.074 4.074 23 N -0.965 5.965 24 Si 0.967 3.033 25 H -0.284 1.284 26 H -0.296 1.296 27 H -0.272 1.272 28 C 0.130 3.870 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.165 0.835 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.121 0.879 40 H 0.033 0.967 41 H 0.018 0.982 42 H 0.371 0.629 43 H 0.248 0.752 44 H 0.059 0.941 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.753 5.117 9.092 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.036 4.036 3 C -0.174 4.174 4 C -0.265 4.265 5 C 0.322 3.678 6 O -0.455 6.455 7 N -0.340 5.340 8 C -0.011 4.011 9 C -0.174 4.174 10 C -0.131 4.131 11 H 0.170 0.830 12 C 0.398 3.602 13 F -0.169 7.169 14 F -0.160 7.160 15 F -0.174 7.174 16 C -0.122 4.122 17 H 0.105 0.895 18 C 0.019 3.981 19 N -0.378 5.378 20 C -0.370 4.370 21 H 0.084 0.916 22 C -0.266 4.266 23 N -0.616 5.616 24 Si 0.796 3.204 25 H -0.211 1.211 26 H -0.222 1.222 27 H -0.197 1.197 28 C 0.006 3.994 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.182 0.818 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.139 0.861 40 H 0.051 0.949 41 H 0.036 0.964 42 H 0.204 0.796 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 21.163 5.170 8.961 23.556 hybrid contribution -1.436 -0.400 -1.079 1.840 sum 19.727 4.770 7.882 21.772 Atomic orbital electron populations 1.21103 0.93269 1.01852 1.02239 1.22868 0.95673 0.96438 0.88643 1.21034 1.00400 0.92130 1.03857 1.22615 1.01592 0.90504 1.11769 1.19251 0.86810 0.85649 0.76107 1.90822 1.16376 1.87460 1.50885 1.47960 1.07918 1.04819 1.73318 1.22048 0.77545 1.02425 0.99052 1.22136 1.02551 0.92012 1.00704 1.22490 0.95747 0.97100 0.97777 0.83013 1.20861 0.75086 0.80012 0.84221 1.93113 1.92336 1.83747 1.47699 1.93167 1.31120 1.95605 1.96147 1.93167 1.81762 1.46147 1.96283 1.21631 0.94041 1.00355 0.96203 0.89524 1.21268 0.84236 0.97370 0.95232 1.42440 1.01761 1.74254 1.19323 1.19468 0.90225 1.31384 0.95894 0.91606 1.25489 0.96922 1.03434 1.00758 1.69828 1.04189 1.54685 1.32885 0.85233 0.77720 0.78151 0.79271 1.21105 1.22218 1.19749 1.21340 0.97412 0.83484 0.97142 0.91563 0.91154 0.92934 0.89508 0.90066 0.88831 0.81764 0.86745 0.87719 0.91693 0.86052 0.94901 0.96403 0.79648 0.94291 0.92258 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.51 71.24 0.61 -3.53 16 2 C -0.03 -0.86 6.11 -17.62 -0.11 -0.97 16 3 C -0.12 -1.72 10.01 71.24 0.71 -1.01 16 4 C -0.24 -6.23 8.95 23.43 0.21 -6.02 16 5 C 0.53 18.42 7.56 86.57 0.65 19.07 16 6 O -0.57 -26.68 12.58 -4.07 -0.05 -26.73 16 7 N -0.61 -16.99 2.40 -823.17 -1.98 -18.97 16 8 C 0.11 1.74 6.35 86.36 0.55 2.29 16 9 C -0.14 -2.31 4.77 30.70 0.15 -2.16 16 10 C -0.11 -2.30 2.02 -10.74 -0.02 -2.32 16 11 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 12 C 0.45 11.07 2.63 71.98 0.19 11.25 16 13 F -0.19 -5.70 13.28 44.97 0.60 -5.10 16 14 F -0.18 -3.76 16.92 44.97 0.76 -3.00 16 15 F -0.19 -5.36 16.63 44.97 0.75 -4.61 16 16 C -0.10 -3.16 2.15 -10.72 -0.02 -3.18 16 17 H 0.09 2.79 7.68 -2.39 -0.02 2.77 16 18 C 0.15 6.05 4.52 86.38 0.39 6.44 16 19 N -0.74 -39.91 5.26 -343.44 -1.81 -41.71 16 20 C -0.24 -14.32 9.99 84.03 0.84 -13.48 16 21 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 22 C -0.07 -4.55 5.50 84.86 0.47 -4.08 16 23 N -0.97 -63.27 13.06 21.65 0.28 -62.99 16 24 Si 0.97 49.56 29.55 68.60 2.03 51.59 16 25 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 26 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 27 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 28 C 0.13 4.10 5.71 86.36 0.49 4.59 16 29 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 30 H 0.07 1.90 8.09 -2.38 -0.02 1.88 16 31 H 0.05 2.29 5.98 -2.39 -0.01 2.27 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 34 H 0.09 0.93 8.07 -2.39 -0.02 0.91 16 35 H 0.17 2.66 5.86 -2.91 -0.02 2.65 16 36 H 0.11 1.32 5.30 -2.39 -0.01 1.31 16 37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.48 5.97 -2.39 -0.01 1.47 16 39 H 0.12 1.24 7.87 -2.39 -0.02 1.22 16 40 H 0.03 1.44 5.31 -2.39 -0.01 1.43 16 41 H 0.02 0.78 5.98 -2.38 -0.01 0.76 16 42 H 0.37 21.65 6.54 -92.71 -0.61 21.04 16 43 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 44 H 0.06 2.58 5.66 -2.38 -0.01 2.57 16 45 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -82.49 358.99 6.12 -76.38 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.43 Total: 28.27 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.11 Total: 6.88 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -3.50 Total: -123.67 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 9 Polarization: -14.82 SS G_CDS: 2.11 Total: -12.71 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.03 Total: 51.59 kcal Total: -82.49 6.12 -76.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692150727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.205 kcal (2) G-P(sol) polarization free energy of solvation -82.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds