Wall clock time and date at job start Tue Mar 31 2020 17:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50700 * 120.00215 * 2 1 4 4 C 1.32994 * 119.99588 * 179.72544 * 2 1 3 5 5 C 1.47102 * 120.00084 * 6.39377 * 4 2 1 6 6 O 1.21609 * 119.99917 * 6.46166 * 5 4 2 7 7 N 1.34777 * 119.99890 * 186.46156 * 5 4 2 8 8 C 1.46931 * 120.62907 * 354.37583 * 7 5 4 9 9 C 1.52761 * 109.00521 * 233.58198 * 8 7 5 10 10 C 1.53041 * 109.38465 * 305.58509 * 9 8 7 11 11 H 1.08996 * 109.46425 * 301.22290 * 10 9 8 12 12 C 1.53004 * 109.44904 * 181.25260 * 10 9 8 13 13 F 1.39896 * 109.47117 * 292.27612 * 12 10 9 14 14 F 1.39897 * 109.46921 * 52.28243 * 12 10 9 15 15 F 1.39900 * 109.46812 * 172.28113 * 12 10 9 16 16 C 1.53043 * 109.53617 * 61.24240 * 10 9 8 17 17 H 1.09003 * 109.49855 * 58.58606 * 16 10 9 18 18 C 1.52997 * 109.49815 * 178.68344 * 16 10 9 19 19 N 1.46503 * 109.46957 * 179.23287 * 18 16 10 20 20 C 1.36936 * 119.99640 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00776 * 359.97438 * 20 19 18 22 22 C 1.38821 * 119.99875 * 179.97438 * 20 19 18 23 23 N 1.31615 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00129 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46979 * 59.99835 * 24 22 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47180 * 300.00334 * 24 22 20 28 28 C 1.46929 * 120.63212 * 174.65028 * 7 5 4 29 29 H 1.09004 * 109.46986 * 95.80415 * 1 2 3 30 30 H 1.08994 * 109.47158 * 215.80296 * 1 2 3 31 31 H 1.09001 * 109.46600 * 335.80319 * 1 2 3 32 32 H 1.09001 * 109.46613 * 89.99826 * 3 2 1 33 33 H 1.08996 * 109.46935 * 210.00429 * 3 2 1 34 34 H 1.09000 * 109.46750 * 329.99883 * 3 2 1 35 35 H 1.08000 * 119.99798 * 186.38845 * 4 2 1 36 36 H 1.08999 * 109.58957 * 353.41444 * 8 7 5 37 37 H 1.09000 * 109.58865 * 113.84045 * 8 7 5 38 38 H 1.09004 * 109.56449 * 185.55274 * 9 8 7 39 39 H 1.09000 * 109.39096 * 65.51574 * 9 8 7 40 40 H 1.08996 * 109.47164 * 299.22841 * 18 16 10 41 41 H 1.08996 * 109.47333 * 59.23361 * 18 16 10 42 42 H 0.96998 * 120.00357 * 359.97438 * 19 18 16 43 43 H 0.96998 * 119.99860 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.58804 * 246.15778 * 28 7 5 45 45 H 1.08997 * 109.58258 * 6.44443 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1518 0.0055 5 6 1.4432 -2.4224 -0.1303 6 8 0.2500 -2.4169 -0.3650 7 7 2.0980 -3.5926 0.0055 8 6 3.5582 -3.6190 0.1666 9 6 4.1583 -4.5473 -0.8879 10 6 3.4903 -5.9211 -0.7945 11 1 3.6400 -6.3305 0.2045 12 6 4.1121 -6.8612 -1.8292 13 9 3.7705 -6.4303 -3.1156 14 9 5.5040 -6.8538 -1.6890 15 9 3.6301 -8.1592 -1.6289 16 6 1.9912 -5.7809 -1.0688 17 1 1.8412 -5.3485 -2.0581 18 6 1.3299 -7.1592 -1.0076 19 7 -0.1081 -7.0221 -1.2522 20 6 -0.9124 -8.1304 -1.2456 21 1 -0.4867 -9.1056 -1.0607 22 6 -2.2750 -8.0005 -1.4768 23 7 -2.7939 -6.8120 -1.7018 24 14 -3.3721 -9.5123 -1.4686 25 1 -3.2948 -10.1728 -0.1408 26 1 -4.7750 -9.1074 -1.7386 27 1 -2.9186 -10.4587 -2.5193 28 6 1.3659 -4.8664 -0.0108 29 1 -0.3633 -0.1039 -1.0224 30 1 -0.3633 -0.8334 0.6011 31 1 -0.3632 0.9374 0.4212 32 1 2.4422 1.6197 1.0277 33 1 3.2129 1.1747 -0.5139 34 1 1.6715 2.0647 -0.5139 35 1 3.2469 -1.1542 0.1096 36 1 3.9585 -2.6136 0.0365 37 1 3.8096 -3.9889 1.1606 38 1 5.2296 -4.6512 -0.7155 39 1 3.9884 -4.1268 -1.8790 40 1 1.7675 -7.8063 -1.7677 41 1 1.4908 -7.5960 -0.0221 42 1 -0.4906 -6.1463 -1.4179 43 1 -3.7461 -6.7212 -1.8629 44 1 1.4348 -5.3400 0.9685 45 1 0.3196 -4.6833 -0.2554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692150729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:35 Heat of formation + Delta-G solvation = -159.465255 kcal Electronic energy + Delta-G solvation = -30580.496520 eV Core-core repulsion = 25990.697024 eV Total energy + Delta-G solvation = -4589.799496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.02859 -47.52929 -47.41319 -40.29467 -38.14433 -35.44921 -34.99500 -33.41835 -31.95166 -29.96621 -28.56622 -27.86845 -27.03747 -25.42376 -23.63338 -23.33205 -21.47290 -20.91172 -19.88699 -18.37873 -18.24854 -17.94274 -17.76520 -16.91383 -16.88405 -15.65558 -15.28465 -14.88785 -14.67434 -14.30362 -14.25267 -14.20896 -14.03391 -13.93157 -13.76890 -13.66514 -13.57474 -13.50592 -13.22778 -13.03248 -12.90452 -12.59853 -12.53208 -12.35461 -12.31958 -11.83142 -11.74691 -11.45083 -11.26194 -11.02487 -10.95207 -10.68526 -10.56715 -10.46181 -10.01060 -9.61491 -9.37272 -9.21754 -8.81793 -8.49562 -6.86789 -5.68819 -2.98887 1.33121 2.84003 3.06575 3.36146 3.49124 3.53093 3.54545 3.85243 4.00906 4.06711 4.46374 4.54847 4.63479 4.70944 4.76240 4.89743 4.93249 5.07124 5.13735 5.23645 5.26582 5.34201 5.41428 5.51269 5.54735 5.59759 5.61066 5.66705 5.73701 5.82577 5.85366 6.04260 6.08661 6.22382 6.39736 6.43085 6.54477 6.63071 6.73278 6.76034 7.52508 7.76080 8.36076 8.48331 9.59615 10.15405 10.50260 11.53281 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008415 B = 0.004553 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.464514 B = 6148.090497 C = 9083.218710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.033 4.033 3 C -0.126 4.126 4 C -0.240 4.240 5 C 0.543 3.457 6 O -0.525 6.525 7 N -0.615 5.615 8 C 0.113 3.887 9 C -0.134 4.134 10 C -0.125 4.125 11 H 0.116 0.884 12 C 0.455 3.545 13 F -0.180 7.180 14 F -0.190 7.190 15 F -0.172 7.172 16 C -0.106 4.106 17 H 0.088 0.912 18 C 0.145 3.855 19 N -0.730 5.730 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.126 3.874 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.023 0.977 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.070 0.930 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.747 13.201 4.976 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.034 4.034 3 C -0.183 4.183 4 C -0.260 4.260 5 C 0.335 3.665 6 O -0.403 6.403 7 N -0.348 5.348 8 C -0.010 4.010 9 C -0.173 4.173 10 C -0.145 4.145 11 H 0.134 0.866 12 C 0.401 3.599 13 F -0.161 7.161 14 F -0.172 7.172 15 F -0.154 7.154 16 C -0.126 4.126 17 H 0.107 0.893 18 C 0.017 3.983 19 N -0.375 5.375 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.004 3.996 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.041 13.013 4.839 22.765 hybrid contribution -0.386 -0.894 -0.281 1.014 sum 17.655 12.119 4.557 21.894 Atomic orbital electron populations 1.21196 0.90731 1.02475 1.03983 1.22590 0.97046 0.94344 0.89459 1.20998 1.00017 0.94544 1.02719 1.22453 1.00048 0.92142 1.11378 1.18552 0.87015 0.83972 0.76997 1.90834 1.15012 1.86929 1.47513 1.48088 1.07089 1.06598 1.73040 1.21594 0.80387 1.00580 0.98465 1.21946 1.00312 0.93376 1.01642 1.22503 0.98013 0.95354 0.98679 0.86618 1.20569 0.75811 0.81037 0.82500 1.93182 1.91919 1.89534 1.41498 1.93139 1.31618 1.96618 1.95815 1.93185 1.87122 1.40162 1.94896 1.21787 0.90281 0.99212 1.01286 0.89344 1.21070 0.86811 0.91581 0.98865 1.42350 1.00925 1.07976 1.86289 1.19148 0.89194 0.87731 1.41278 0.91228 1.24743 0.96839 0.96550 1.02597 1.69663 1.12023 1.21073 1.54979 0.86284 0.79932 0.82295 0.77755 1.21295 1.21710 1.21297 1.21628 0.98534 0.81331 0.98081 0.90092 0.88924 0.92833 0.90539 0.91216 0.90894 0.85606 0.88958 0.91011 0.89307 0.90103 0.94301 0.95924 0.78010 0.93432 0.91170 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.48 36.01 0.31 -1.22 16 2 C -0.03 -0.33 6.11 -101.16 -0.62 -0.95 16 3 C -0.13 -0.84 10.01 36.01 0.36 -0.48 16 4 C -0.24 -2.61 8.93 -37.81 -0.34 -2.95 16 5 C 0.54 8.07 7.49 -12.66 -0.09 7.98 16 6 O -0.52 -10.01 12.69 5.27 0.07 -9.94 16 7 N -0.61 -8.18 2.98 -174.42 -0.52 -8.70 16 8 C 0.11 1.00 6.29 -3.93 -0.02 0.98 16 9 C -0.13 -1.25 5.09 -26.83 -0.14 -1.38 16 10 C -0.13 -1.51 1.80 -90.57 -0.16 -1.67 16 11 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 12 C 0.45 6.14 2.53 37.16 0.09 6.23 16 13 F -0.18 -2.72 16.34 2.25 0.04 -2.69 16 14 F -0.19 -2.31 16.47 2.25 0.04 -2.28 16 15 F -0.17 -2.68 14.17 2.25 0.03 -2.65 16 16 C -0.11 -1.70 1.78 -90.50 -0.16 -1.86 16 17 H 0.09 1.58 7.68 -51.93 -0.40 1.18 16 18 C 0.14 2.92 4.87 -4.04 -0.02 2.90 16 19 N -0.73 -18.83 5.34 -59.91 -0.32 -19.15 16 20 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 24 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 C 0.13 2.04 5.46 -3.71 -0.02 2.02 16 29 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 30 H 0.09 1.36 6.09 -51.93 -0.32 1.04 16 31 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 34 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.13 0.98 5.92 -52.49 -0.31 0.67 16 36 H 0.09 0.61 5.38 -51.93 -0.28 0.34 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.63 7.59 -51.93 -0.39 0.24 16 39 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 40 H 0.04 0.82 5.59 -51.93 -0.29 0.53 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.39 10.58 6.53 -40.82 -0.27 10.31 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.11 2.32 5.87 -51.93 -0.30 2.02 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -33.78 364.10 -6.86 -40.63 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.32 Total: 7.48 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.06 Total: 2.09 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.11 Total: -56.07 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.11 Total: -7.61 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.78 -6.86 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692150729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.833 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds