Wall clock time and date at job start Tue Mar 31 2020 17:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50700 * 120.00215 * 2 1 4 4 C 1.32994 * 119.99588 * 179.72544 * 2 1 3 5 5 C 1.47102 * 120.00084 * 6.39377 * 4 2 1 6 6 O 1.21609 * 119.99917 * 6.46166 * 5 4 2 7 7 N 1.34777 * 119.99890 * 186.46156 * 5 4 2 8 8 C 1.46931 * 120.62907 * 354.37583 * 7 5 4 9 9 C 1.52761 * 109.00521 * 233.58198 * 8 7 5 10 10 C 1.53041 * 109.38465 * 305.58509 * 9 8 7 11 11 H 1.08996 * 109.46425 * 301.22290 * 10 9 8 12 12 C 1.53004 * 109.44904 * 181.25260 * 10 9 8 13 13 F 1.39896 * 109.47117 * 292.27612 * 12 10 9 14 14 F 1.39897 * 109.46921 * 52.28243 * 12 10 9 15 15 F 1.39900 * 109.46812 * 172.28113 * 12 10 9 16 16 C 1.53043 * 109.53617 * 61.24240 * 10 9 8 17 17 H 1.09003 * 109.49855 * 58.58606 * 16 10 9 18 18 C 1.52997 * 109.49815 * 178.68344 * 16 10 9 19 19 N 1.46503 * 109.46957 * 179.23287 * 18 16 10 20 20 C 1.36936 * 119.99640 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00776 * 359.97438 * 20 19 18 22 22 C 1.38821 * 119.99875 * 179.97438 * 20 19 18 23 23 N 1.31615 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00129 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46979 * 59.99835 * 24 22 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47180 * 300.00334 * 24 22 20 28 28 C 1.46929 * 120.63212 * 174.65028 * 7 5 4 29 29 H 1.09004 * 109.46986 * 95.80415 * 1 2 3 30 30 H 1.08994 * 109.47158 * 215.80296 * 1 2 3 31 31 H 1.09001 * 109.46600 * 335.80319 * 1 2 3 32 32 H 1.09001 * 109.46613 * 89.99826 * 3 2 1 33 33 H 1.08996 * 109.46935 * 210.00429 * 3 2 1 34 34 H 1.09000 * 109.46750 * 329.99883 * 3 2 1 35 35 H 1.08000 * 119.99798 * 186.38845 * 4 2 1 36 36 H 1.08999 * 109.58957 * 353.41444 * 8 7 5 37 37 H 1.09000 * 109.58865 * 113.84045 * 8 7 5 38 38 H 1.09004 * 109.56449 * 185.55274 * 9 8 7 39 39 H 1.09000 * 109.39096 * 65.51574 * 9 8 7 40 40 H 1.08996 * 109.47164 * 299.22841 * 18 16 10 41 41 H 1.08996 * 109.47333 * 59.23361 * 18 16 10 42 42 H 0.96998 * 120.00357 * 359.97438 * 19 18 16 43 43 H 0.96998 * 119.99860 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.58804 * 246.15778 * 28 7 5 45 45 H 1.08997 * 109.58258 * 6.44443 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1518 0.0055 5 6 1.4432 -2.4224 -0.1303 6 8 0.2500 -2.4169 -0.3650 7 7 2.0980 -3.5926 0.0055 8 6 3.5582 -3.6190 0.1666 9 6 4.1583 -4.5473 -0.8879 10 6 3.4903 -5.9211 -0.7945 11 1 3.6400 -6.3305 0.2045 12 6 4.1121 -6.8612 -1.8292 13 9 3.7705 -6.4303 -3.1156 14 9 5.5040 -6.8538 -1.6890 15 9 3.6301 -8.1592 -1.6289 16 6 1.9912 -5.7809 -1.0688 17 1 1.8412 -5.3485 -2.0581 18 6 1.3299 -7.1592 -1.0076 19 7 -0.1081 -7.0221 -1.2522 20 6 -0.9124 -8.1304 -1.2456 21 1 -0.4867 -9.1056 -1.0607 22 6 -2.2750 -8.0005 -1.4768 23 7 -2.7939 -6.8120 -1.7018 24 14 -3.3721 -9.5123 -1.4686 25 1 -3.2948 -10.1728 -0.1408 26 1 -4.7750 -9.1074 -1.7386 27 1 -2.9186 -10.4587 -2.5193 28 6 1.3659 -4.8664 -0.0108 29 1 -0.3633 -0.1039 -1.0224 30 1 -0.3633 -0.8334 0.6011 31 1 -0.3632 0.9374 0.4212 32 1 2.4422 1.6197 1.0277 33 1 3.2129 1.1747 -0.5139 34 1 1.6715 2.0647 -0.5139 35 1 3.2469 -1.1542 0.1096 36 1 3.9585 -2.6136 0.0365 37 1 3.8096 -3.9889 1.1606 38 1 5.2296 -4.6512 -0.7155 39 1 3.9884 -4.1268 -1.8790 40 1 1.7675 -7.8063 -1.7677 41 1 1.4908 -7.5960 -0.0221 42 1 -0.4906 -6.1463 -1.4179 43 1 -3.7461 -6.7212 -1.8629 44 1 1.4348 -5.3400 0.9685 45 1 0.3196 -4.6833 -0.2554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692150729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:34 Heat of formation + Delta-G solvation = -181.198505 kcal Electronic energy + Delta-G solvation = -30581.438944 eV Core-core repulsion = 25990.697024 eV Total energy + Delta-G solvation = -4590.741920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.14123 -48.62152 -48.56058 -41.39209 -39.30344 -36.69554 -36.28733 -34.81662 -33.51902 -31.64207 -29.49625 -28.63162 -28.28035 -26.89697 -25.17564 -24.57012 -22.75632 -22.15638 -20.95900 -19.54850 -19.37741 -19.25730 -18.77059 -18.63096 -17.93352 -16.78258 -16.71561 -16.38361 -15.78981 -15.68357 -15.47218 -15.31370 -15.20423 -15.05110 -14.95003 -14.83917 -14.72929 -14.64592 -14.45599 -14.20598 -14.01100 -13.85022 -13.75396 -13.31072 -13.18379 -13.01448 -12.98588 -12.75375 -12.58217 -12.34769 -12.27831 -12.22878 -12.04459 -12.01076 -11.65045 -11.54776 -10.95114 -10.50474 -10.11304 -9.54901 -9.02047 -7.95251 -5.25987 0.44517 1.44406 1.48572 1.54820 1.77122 2.03043 2.32206 2.53689 2.79794 2.94661 3.02083 3.37553 3.52392 3.63270 3.73056 3.85276 3.93969 4.02567 4.10945 4.15942 4.26735 4.34662 4.42147 4.55761 4.59201 4.60080 4.70312 4.71621 4.79033 4.85857 4.93784 4.97269 5.05390 5.07255 5.11221 5.22256 5.23759 5.46808 5.49117 5.57987 5.70806 6.24542 6.50749 7.27407 7.30735 8.05253 8.28171 9.27740 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008415 B = 0.004553 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.464514 B = 6148.090497 C = 9083.218710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.028 4.028 3 C -0.120 4.120 4 C -0.244 4.244 5 C 0.528 3.472 6 O -0.585 6.585 7 N -0.612 5.612 8 C 0.108 3.892 9 C -0.128 4.128 10 C -0.117 4.117 11 H 0.142 0.858 12 C 0.454 3.546 13 F -0.193 7.193 14 F -0.177 7.177 15 F -0.187 7.187 16 C -0.091 4.091 17 H 0.063 0.937 18 C 0.143 3.857 19 N -0.745 5.745 20 C -0.248 4.248 21 H 0.077 0.923 22 C -0.075 4.075 23 N -0.970 5.970 24 Si 0.976 3.024 25 H -0.274 1.274 26 H -0.296 1.296 27 H -0.277 1.277 28 C 0.135 3.865 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.169 0.831 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.033 0.967 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.079 0.921 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.297 14.016 6.270 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.030 4.030 3 C -0.177 4.177 4 C -0.265 4.265 5 C 0.322 3.678 6 O -0.467 6.467 7 N -0.344 5.344 8 C -0.013 4.013 9 C -0.166 4.166 10 C -0.137 4.137 11 H 0.159 0.841 12 C 0.400 3.600 13 F -0.175 7.175 14 F -0.158 7.158 15 F -0.169 7.169 16 C -0.111 4.111 17 H 0.081 0.919 18 C 0.017 3.983 19 N -0.388 5.388 20 C -0.380 4.380 21 H 0.095 0.905 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.804 3.196 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.203 1.203 28 C 0.012 3.988 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.186 0.814 36 H 0.143 0.857 37 H 0.117 0.883 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.204 0.796 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 21.688 13.802 6.148 26.432 hybrid contribution -1.442 -1.150 -0.689 1.969 sum 20.245 12.652 5.459 24.490 Atomic orbital electron populations 1.21114 0.92943 1.02268 1.02230 1.22905 0.95918 0.96266 0.87929 1.21053 1.00271 0.92105 1.04224 1.22562 1.01639 0.89847 1.12409 1.19430 0.86683 0.85666 0.76059 1.90822 1.17812 1.87811 1.50302 1.48178 1.09088 1.04945 1.72210 1.22020 0.76985 1.02612 0.99704 1.22014 1.02086 0.91116 1.01426 1.22529 0.94535 0.97273 0.99321 0.84052 1.20770 0.76445 0.80576 0.82244 1.93161 1.92127 1.89593 1.42600 1.93161 1.30432 1.96523 1.95697 1.93153 1.87425 1.41374 1.94922 1.21506 0.93221 0.96385 0.99990 0.91853 1.21231 0.84024 0.94293 0.98775 1.42585 1.03217 1.06722 1.86260 1.19602 0.89880 0.88733 1.39774 0.90485 1.25624 0.98436 0.99495 1.03175 1.69858 1.11839 1.23453 1.56894 0.85185 0.77423 0.78725 0.78267 1.20024 1.22195 1.20344 1.21228 0.96289 0.83105 0.98226 0.92209 0.92332 0.90398 0.88643 0.89299 0.90276 0.81426 0.85714 0.88295 0.85566 0.91112 0.94743 0.94926 0.79577 0.94080 0.90264 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.48 71.24 0.60 -2.61 16 2 C -0.03 -0.53 6.11 -17.61 -0.11 -0.64 16 3 C -0.12 -1.15 10.01 71.24 0.71 -0.44 16 4 C -0.24 -4.82 8.93 23.43 0.21 -4.62 16 5 C 0.53 16.00 7.49 86.57 0.65 16.65 16 6 O -0.59 -24.33 12.69 -4.06 -0.05 -24.38 16 7 N -0.61 -15.92 2.98 -824.00 -2.45 -18.37 16 8 C 0.11 1.48 6.29 86.22 0.54 2.03 16 9 C -0.13 -1.90 5.09 30.53 0.16 -1.75 16 10 C -0.12 -2.55 1.80 -10.76 -0.02 -2.57 16 11 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 12 C 0.45 11.46 2.53 71.98 0.18 11.64 16 13 F -0.19 -5.75 16.34 44.97 0.73 -5.02 16 14 F -0.18 -3.75 16.47 44.97 0.74 -3.01 16 15 F -0.19 -5.65 14.17 44.97 0.64 -5.01 16 16 C -0.09 -2.97 1.78 -10.72 -0.02 -2.99 16 17 H 0.06 2.38 7.68 -2.39 -0.02 2.36 16 18 C 0.14 5.91 4.87 86.38 0.42 6.33 16 19 N -0.74 -40.19 5.34 -343.45 -1.83 -42.02 16 20 C -0.25 -14.58 9.99 84.04 0.84 -13.74 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 23 N -0.97 -63.16 13.06 21.65 0.28 -62.88 16 24 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 25 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 28 C 0.13 4.53 5.46 86.36 0.47 5.00 16 29 H 0.06 1.71 8.06 -2.39 -0.02 1.69 16 30 H 0.06 1.88 6.09 -2.39 -0.01 1.86 16 31 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.57 8.07 -2.39 -0.02 0.55 16 34 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 35 H 0.17 1.78 5.92 -2.91 -0.02 1.76 16 36 H 0.13 0.97 5.38 -2.39 -0.01 0.95 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.13 1.06 7.59 -2.38 -0.02 1.05 16 39 H 0.07 1.25 8.04 -2.39 -0.02 1.23 16 40 H 0.03 1.48 5.59 -2.39 -0.01 1.47 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.37 21.90 6.53 -92.71 -0.61 21.29 16 43 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 44 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.06 2.67 5.87 -2.39 -0.01 2.66 16 Total: -1.00 -80.50 364.10 5.61 -74.89 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.42 Total: 27.32 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.11 Total: 8.22 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -4.00 Total: -123.27 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 9 Polarization: -15.15 SS G_CDS: 2.11 Total: -13.04 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -80.50 5.61 -74.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692150729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.307 kcal (2) G-P(sol) polarization free energy of solvation -80.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds