Wall clock time and date at job start Tue Mar 31 2020 17:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50697 * 120.00117 * 2 1 4 4 C 1.32991 * 120.00146 * 179.97438 * 2 1 3 5 5 C 1.47103 * 119.99751 * 352.08074 * 4 2 1 6 6 O 1.21612 * 120.00312 * 353.34158 * 5 4 2 7 7 N 1.34779 * 119.99680 * 173.33939 * 5 4 2 8 8 C 1.46923 * 120.63387 * 5.28699 * 7 5 4 9 9 C 1.53191 * 108.77726 * 126.36567 * 8 7 5 10 10 C 1.53039 * 109.31428 * 54.63640 * 9 8 7 11 11 H 1.09005 * 109.45866 * 58.65610 * 10 9 8 12 12 C 1.53002 * 109.46203 * 178.62512 * 10 9 8 13 13 F 1.39902 * 109.46810 * 67.17619 * 12 10 9 14 14 F 1.39896 * 109.46839 * 187.17195 * 12 10 9 15 15 F 1.39893 * 109.47221 * 307.17403 * 12 10 9 16 16 C 1.53039 * 109.52627 * 298.64408 * 10 9 8 17 17 H 1.09006 * 109.49559 * 301.40465 * 16 10 9 18 18 C 1.53002 * 109.49828 * 181.31148 * 16 10 9 19 19 N 1.46498 * 109.46956 * 182.49812 * 18 16 10 20 20 C 1.36945 * 119.99636 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99555 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99327 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00425 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46981 * 90.00096 * 24 22 20 26 26 H 1.48498 * 109.47414 * 210.00239 * 24 22 20 27 27 H 1.48503 * 109.47079 * 330.00728 * 24 22 20 28 28 C 1.46929 * 120.62918 * 185.25943 * 7 5 4 29 29 H 1.09000 * 109.46999 * 263.76447 * 1 2 3 30 30 H 1.08997 * 109.47177 * 23.76385 * 1 2 3 31 31 H 1.09002 * 109.47004 * 143.76576 * 1 2 3 32 32 H 1.08998 * 109.46880 * 270.00028 * 3 2 1 33 33 H 1.09010 * 109.47198 * 29.99661 * 3 2 1 34 34 H 1.09003 * 109.47475 * 149.99541 * 3 2 1 35 35 H 1.07999 * 120.00223 * 172.07917 * 4 2 1 36 36 H 1.09000 * 109.58504 * 6.58024 * 8 7 5 37 37 H 1.08996 * 109.70614 * 246.22510 * 8 7 5 38 38 H 1.08996 * 109.50090 * 294.68270 * 9 8 7 39 39 H 1.09003 * 109.49534 * 174.58850 * 9 8 7 40 40 H 1.09008 * 109.46593 * 302.49303 * 18 16 10 41 41 H 1.08992 * 109.47262 * 62.49098 * 18 16 10 42 42 H 0.97004 * 120.00273 * 359.97438 * 19 18 16 43 43 H 0.97006 * 119.99661 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.58934 * 353.41996 * 28 7 5 45 45 H 1.09005 * 109.58507 * 113.70357 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4470 -2.4195 0.1766 6 8 0.2603 -2.4096 0.4422 7 7 2.0980 -3.5921 0.0436 8 6 3.5524 -3.6218 -0.1624 9 6 4.1820 -4.5318 0.8970 10 6 3.5119 -5.9067 0.8462 11 1 3.6343 -6.3337 -0.1492 12 6 4.1615 -6.8290 1.8798 13 9 3.8655 -6.3682 3.1672 14 9 3.6649 -8.1274 1.7236 15 9 5.5480 -6.8344 1.6938 16 6 2.0208 -5.7609 1.1586 17 1 1.8979 -5.3110 2.1439 18 6 1.3579 -7.1397 1.1398 19 7 -0.0799 -6.9936 1.3799 20 6 -0.8854 -8.1007 1.4074 21 1 -0.4609 -9.0814 1.2517 22 6 -2.2477 -7.9622 1.6355 23 7 -3.0218 -9.0263 1.6624 24 14 -2.9819 -6.2659 1.9056 25 1 -3.3944 -5.6915 0.5998 26 1 -4.1663 -6.3750 2.7947 27 1 -1.9686 -5.3828 2.5369 28 6 1.3667 -4.8652 0.1024 29 1 -0.3633 -0.1116 1.0216 30 1 -0.3633 0.9405 -0.4141 31 1 -0.3633 -0.8289 -0.6075 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0648 0.5138 34 1 3.2130 1.1748 0.5139 35 1 3.2443 -1.1563 -0.1284 36 1 3.9559 -2.6139 -0.0648 37 1 3.7750 -4.0098 -1.1563 38 1 4.0387 -4.0936 1.8847 39 1 5.2482 -4.6391 0.6973 40 1 1.5183 -7.6067 0.1680 41 1 1.7949 -7.7637 1.9193 42 1 -0.4613 -6.1126 1.5195 43 1 -3.9739 -8.9296 1.8214 44 1 0.3281 -4.6777 0.3746 45 1 1.4068 -5.3548 -0.8707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692150730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:37 Heat of formation + Delta-G solvation = -156.515602 kcal Electronic energy + Delta-G solvation = -30721.255202 eV Core-core repulsion = 26131.583613 eV Total energy + Delta-G solvation = -4589.671589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.08854 -47.58500 -47.47786 -40.44258 -38.28384 -35.58319 -35.20546 -33.54292 -32.02492 -30.39692 -28.69822 -27.98385 -27.24970 -25.69945 -23.73329 -23.16574 -21.40915 -21.04136 -20.02219 -18.48031 -18.31041 -18.13683 -17.88492 -17.33342 -17.00003 -15.80606 -15.41948 -14.95609 -14.72235 -14.42960 -14.33064 -14.25737 -14.13776 -14.05574 -13.87293 -13.78885 -13.68020 -13.61938 -13.23850 -13.09200 -13.03137 -12.72174 -12.62726 -12.48492 -12.41154 -11.97253 -11.86069 -11.60790 -11.47492 -11.33157 -11.10378 -10.74229 -10.66571 -10.52590 -10.05462 -9.57680 -9.52170 -9.32697 -8.86160 -8.64589 -7.20051 -5.72493 -3.08661 1.19784 2.76116 2.91664 3.21456 3.45780 3.51145 3.53960 3.77248 3.92276 3.97192 4.34457 4.45950 4.58144 4.63424 4.65457 4.77592 4.82700 4.93428 5.02310 5.13725 5.16380 5.23526 5.26656 5.40097 5.43257 5.47750 5.51218 5.55789 5.59075 5.70431 5.71604 5.72485 5.92070 6.04376 6.14894 6.27588 6.36615 6.47351 6.61048 6.62321 7.36374 8.02622 8.19313 8.45780 9.24263 9.96835 10.15310 11.45614 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.007891 B = 0.005380 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3547.334177 B = 5203.677248 C = 8329.037874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.030 4.030 3 C -0.127 4.127 4 C -0.241 4.241 5 C 0.545 3.455 6 O -0.532 6.532 7 N -0.614 5.614 8 C 0.113 3.887 9 C -0.134 4.134 10 C -0.125 4.125 11 H 0.118 0.882 12 C 0.455 3.545 13 F -0.181 7.181 14 F -0.171 7.171 15 F -0.189 7.189 16 C -0.111 4.111 17 H 0.088 0.912 18 C 0.150 3.850 19 N -0.754 5.754 20 C -0.245 4.245 21 H 0.091 0.909 22 C 0.008 3.992 23 N -0.933 5.933 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.275 1.275 28 C 0.124 3.876 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.033 0.967 41 H 0.047 0.953 42 H 0.362 0.638 43 H 0.259 0.741 44 H 0.104 0.896 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.693 18.129 -5.157 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.032 4.032 3 C -0.183 4.183 4 C -0.261 4.261 5 C 0.337 3.663 6 O -0.411 6.411 7 N -0.348 5.348 8 C -0.010 4.010 9 C -0.173 4.173 10 C -0.145 4.145 11 H 0.136 0.864 12 C 0.401 3.599 13 F -0.162 7.162 14 F -0.152 7.152 15 F -0.171 7.171 16 C -0.131 4.131 17 H 0.107 0.893 18 C 0.022 3.978 19 N -0.401 5.401 20 C -0.374 4.374 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.581 5.581 24 Si 0.710 3.290 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.201 1.201 28 C 0.002 3.998 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.196 0.804 43 H 0.069 0.931 44 H 0.123 0.877 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.991 17.859 -5.001 26.545 hybrid contribution -0.300 0.795 0.438 0.956 sum 18.691 18.655 -4.562 26.799 Atomic orbital electron populations 1.21153 0.90818 1.02325 1.03906 1.22594 0.96977 0.94415 0.89224 1.21008 1.00064 0.94450 1.02810 1.22437 1.00218 0.92047 1.11428 1.18569 0.86809 0.83978 0.76954 1.90813 1.15561 1.87061 1.47651 1.48084 1.07815 1.06353 1.72523 1.21703 0.80101 1.00839 0.98400 1.22022 1.00308 0.93352 1.01595 1.22484 0.97370 0.95739 0.98911 0.86369 1.20539 0.76190 0.80815 0.82378 1.93181 1.92974 1.88588 1.41458 1.93203 1.86600 1.39921 1.95480 1.93144 1.32089 1.96620 1.95211 1.21836 0.90886 0.99276 1.01066 0.89325 1.21052 0.85429 0.91568 0.99741 1.42732 1.02751 1.06238 1.88359 1.19029 0.89108 0.87646 1.41636 0.89105 1.24636 0.96009 0.96484 1.01683 1.69705 1.04718 1.27311 1.56399 0.86618 0.78991 0.85237 0.78157 1.20906 1.21707 1.20147 1.21614 0.97823 0.81745 0.98585 0.90083 0.92681 0.89333 0.90463 0.90823 0.91124 0.85442 0.88851 0.90776 0.90065 0.89152 0.94917 0.93539 0.80440 0.93070 0.87748 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.44 36.01 0.30 -1.08 16 2 C -0.03 -0.29 6.10 -101.17 -0.62 -0.90 16 3 C -0.13 -0.76 10.01 36.00 0.36 -0.40 16 4 C -0.24 -2.41 8.93 -37.81 -0.34 -2.75 16 5 C 0.55 7.54 7.47 -12.66 -0.09 7.45 16 6 O -0.53 -9.51 12.74 5.27 0.07 -9.44 16 7 N -0.61 -7.55 2.97 -174.18 -0.52 -8.07 16 8 C 0.11 0.90 6.32 -3.71 -0.02 0.87 16 9 C -0.13 -1.13 5.11 -26.61 -0.14 -1.27 16 10 C -0.12 -1.39 1.79 -90.58 -0.16 -1.55 16 11 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 12 C 0.45 5.82 2.53 37.16 0.09 5.92 16 13 F -0.18 -2.59 16.34 2.25 0.04 -2.55 16 14 F -0.17 -2.58 14.16 2.25 0.03 -2.54 16 15 F -0.19 -2.20 16.50 2.25 0.04 -2.16 16 16 C -0.11 -1.66 1.81 -90.51 -0.16 -1.82 16 17 H 0.09 1.45 7.69 -51.93 -0.40 1.05 16 18 C 0.15 2.88 4.81 -4.04 -0.02 2.86 16 19 N -0.75 -18.33 5.13 -59.91 -0.31 -18.64 16 20 C -0.24 -7.09 10.47 -15.05 -0.16 -7.25 16 21 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -29.99 13.97 55.49 0.78 -29.22 16 24 Si 0.88 23.28 27.73 -169.99 -4.71 18.56 16 25 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 27 H -0.28 -7.06 6.52 56.52 0.37 -6.69 16 28 C 0.12 1.86 5.43 -3.72 -0.02 1.84 16 29 H 0.08 0.99 7.98 -51.93 -0.41 0.58 16 30 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.09 1.20 6.27 -51.93 -0.33 0.87 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.40 8.12 -51.92 -0.42 -0.03 16 34 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.13 0.88 5.91 -52.49 -0.31 0.57 16 36 H 0.09 0.54 5.37 -51.93 -0.28 0.26 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 39 H 0.09 0.57 7.60 -51.93 -0.39 0.18 16 40 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.05 0.94 5.70 -51.93 -0.30 0.65 16 42 H 0.36 8.80 4.28 -40.82 -0.17 8.62 16 43 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 44 H 0.10 1.95 5.77 -51.93 -0.30 1.65 16 45 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -34.85 360.96 -6.50 -41.35 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.28 Total: 5.20 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.07 Total: 2.06 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.05 Total: -55.92 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.11 Total: -7.25 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.71 Total: 18.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.85 -6.50 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692150730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.166 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds