Wall clock time and date at job start Tue Mar 31 2020 17:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50697 * 120.00117 * 2 1 4 4 C 1.32991 * 120.00146 * 179.97438 * 2 1 3 5 5 C 1.47103 * 119.99751 * 352.08074 * 4 2 1 6 6 O 1.21612 * 120.00312 * 353.34158 * 5 4 2 7 7 N 1.34779 * 119.99680 * 173.33939 * 5 4 2 8 8 C 1.46923 * 120.63387 * 5.28699 * 7 5 4 9 9 C 1.53191 * 108.77726 * 126.36567 * 8 7 5 10 10 C 1.53039 * 109.31428 * 54.63640 * 9 8 7 11 11 H 1.09005 * 109.45866 * 58.65610 * 10 9 8 12 12 C 1.53002 * 109.46203 * 178.62512 * 10 9 8 13 13 F 1.39902 * 109.46810 * 67.17619 * 12 10 9 14 14 F 1.39896 * 109.46839 * 187.17195 * 12 10 9 15 15 F 1.39893 * 109.47221 * 307.17403 * 12 10 9 16 16 C 1.53039 * 109.52627 * 298.64408 * 10 9 8 17 17 H 1.09006 * 109.49559 * 301.40465 * 16 10 9 18 18 C 1.53002 * 109.49828 * 181.31148 * 16 10 9 19 19 N 1.46498 * 109.46956 * 182.49812 * 18 16 10 20 20 C 1.36945 * 119.99636 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99555 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99327 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00425 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46981 * 90.00096 * 24 22 20 26 26 H 1.48498 * 109.47414 * 210.00239 * 24 22 20 27 27 H 1.48503 * 109.47079 * 330.00728 * 24 22 20 28 28 C 1.46929 * 120.62918 * 185.25943 * 7 5 4 29 29 H 1.09000 * 109.46999 * 263.76447 * 1 2 3 30 30 H 1.08997 * 109.47177 * 23.76385 * 1 2 3 31 31 H 1.09002 * 109.47004 * 143.76576 * 1 2 3 32 32 H 1.08998 * 109.46880 * 270.00028 * 3 2 1 33 33 H 1.09010 * 109.47198 * 29.99661 * 3 2 1 34 34 H 1.09003 * 109.47475 * 149.99541 * 3 2 1 35 35 H 1.07999 * 120.00223 * 172.07917 * 4 2 1 36 36 H 1.09000 * 109.58504 * 6.58024 * 8 7 5 37 37 H 1.08996 * 109.70614 * 246.22510 * 8 7 5 38 38 H 1.08996 * 109.50090 * 294.68270 * 9 8 7 39 39 H 1.09003 * 109.49534 * 174.58850 * 9 8 7 40 40 H 1.09008 * 109.46593 * 302.49303 * 18 16 10 41 41 H 1.08992 * 109.47262 * 62.49098 * 18 16 10 42 42 H 0.97004 * 120.00273 * 359.97438 * 19 18 16 43 43 H 0.97006 * 119.99661 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.58934 * 353.41996 * 28 7 5 45 45 H 1.09005 * 109.58507 * 113.70357 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4470 -2.4195 0.1766 6 8 0.2603 -2.4096 0.4422 7 7 2.0980 -3.5921 0.0436 8 6 3.5524 -3.6218 -0.1624 9 6 4.1820 -4.5318 0.8970 10 6 3.5119 -5.9067 0.8462 11 1 3.6343 -6.3337 -0.1492 12 6 4.1615 -6.8290 1.8798 13 9 3.8655 -6.3682 3.1672 14 9 3.6649 -8.1274 1.7236 15 9 5.5480 -6.8344 1.6938 16 6 2.0208 -5.7609 1.1586 17 1 1.8979 -5.3110 2.1439 18 6 1.3579 -7.1397 1.1398 19 7 -0.0799 -6.9936 1.3799 20 6 -0.8854 -8.1007 1.4074 21 1 -0.4609 -9.0814 1.2517 22 6 -2.2477 -7.9622 1.6355 23 7 -3.0218 -9.0263 1.6624 24 14 -2.9819 -6.2659 1.9056 25 1 -3.3944 -5.6915 0.5998 26 1 -4.1663 -6.3750 2.7947 27 1 -1.9686 -5.3828 2.5369 28 6 1.3667 -4.8652 0.1024 29 1 -0.3633 -0.1116 1.0216 30 1 -0.3633 0.9405 -0.4141 31 1 -0.3633 -0.8289 -0.6075 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0648 0.5138 34 1 3.2130 1.1748 0.5139 35 1 3.2443 -1.1563 -0.1284 36 1 3.9559 -2.6139 -0.0648 37 1 3.7750 -4.0098 -1.1563 38 1 4.0387 -4.0936 1.8847 39 1 5.2482 -4.6391 0.6973 40 1 1.5183 -7.6067 0.1680 41 1 1.7949 -7.7637 1.9193 42 1 -0.4613 -6.1126 1.5195 43 1 -3.9739 -8.9296 1.8214 44 1 0.3281 -4.6777 0.3746 45 1 1.4068 -5.3548 -0.8707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692150730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:37 Heat of formation + Delta-G solvation = -179.268036 kcal Electronic energy + Delta-G solvation = -30722.241822 eV Core-core repulsion = 26131.583613 eV Total energy + Delta-G solvation = -4590.658209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.14226 -48.62488 -48.56341 -41.43335 -39.35424 -36.86198 -36.32131 -34.85353 -33.68888 -32.00989 -29.53760 -28.66062 -28.42630 -27.01342 -24.93621 -24.55530 -22.70187 -22.26760 -20.99292 -19.91684 -19.41329 -19.34543 -18.80244 -18.72858 -17.96286 -16.79776 -16.73994 -16.42627 -16.01348 -15.76472 -15.46032 -15.32386 -15.23981 -14.98101 -14.90896 -14.85837 -14.75810 -14.67420 -14.50315 -14.38734 -14.09179 -13.93506 -13.79812 -13.41259 -13.28169 -13.19490 -13.12516 -12.88331 -12.62048 -12.38041 -12.30832 -12.23556 -12.07922 -11.94714 -11.70209 -11.65609 -11.04975 -10.57961 -10.12776 -9.58689 -9.34392 -8.08728 -5.41111 0.40918 1.31303 1.33734 1.39216 1.76460 1.98695 2.28392 2.40379 2.78344 2.90529 3.00187 3.23460 3.43731 3.59553 3.63144 3.80966 3.90743 3.91741 4.01628 4.12974 4.16052 4.29542 4.36751 4.53774 4.57944 4.58433 4.67172 4.68410 4.74844 4.84245 4.90198 4.92728 4.98610 5.04448 5.08300 5.18828 5.20612 5.45173 5.54676 5.67582 5.70909 6.15632 6.45844 7.01254 7.21562 7.77326 7.94337 9.12905 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.007891 B = 0.005380 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3547.334177 B = 5203.677248 C = 8329.037874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.027 4.027 3 C -0.122 4.122 4 C -0.245 4.245 5 C 0.531 3.469 6 O -0.588 6.588 7 N -0.612 5.612 8 C 0.108 3.892 9 C -0.128 4.128 10 C -0.117 4.117 11 H 0.143 0.857 12 C 0.452 3.548 13 F -0.192 7.192 14 F -0.188 7.188 15 F -0.177 7.177 16 C -0.097 4.097 17 H 0.071 0.929 18 C 0.146 3.854 19 N -0.759 5.759 20 C -0.231 4.231 21 H 0.064 0.936 22 C -0.052 4.052 23 N -0.978 5.978 24 Si 0.944 3.056 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.268 1.268 28 C 0.129 3.871 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.168 0.832 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.362 0.638 43 H 0.259 0.741 44 H 0.061 0.939 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.132 21.155 -6.261 31.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.029 4.029 3 C -0.178 4.178 4 C -0.266 4.266 5 C 0.325 3.675 6 O -0.470 6.470 7 N -0.344 5.344 8 C -0.013 4.013 9 C -0.166 4.166 10 C -0.137 4.137 11 H 0.161 0.839 12 C 0.398 3.602 13 F -0.174 7.174 14 F -0.170 7.170 15 F -0.159 7.159 16 C -0.117 4.117 17 H 0.089 0.911 18 C 0.020 3.980 19 N -0.405 5.405 20 C -0.362 4.362 21 H 0.082 0.918 22 C -0.244 4.244 23 N -0.629 5.629 24 Si 0.772 3.228 25 H -0.207 1.207 26 H -0.216 1.216 27 H -0.193 1.193 28 C 0.005 3.995 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.185 0.815 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.196 0.804 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.521 20.903 -6.114 31.329 hybrid contribution -1.296 -0.216 0.772 1.524 sum 21.225 20.688 -5.342 30.116 Atomic orbital electron populations 1.21083 0.92844 1.02187 1.02239 1.22893 0.95959 0.96210 0.87856 1.21061 1.00298 0.92213 1.04210 1.22556 1.01752 0.89935 1.12315 1.19378 0.86499 0.85529 0.76113 1.90794 1.18111 1.87870 1.50251 1.48169 1.09655 1.04799 1.71742 1.22106 0.76942 1.02800 0.99448 1.22082 1.01905 0.91065 1.01548 1.22529 0.94204 0.97607 0.99315 0.83947 1.20806 0.76783 0.80301 0.82278 1.93161 1.93137 1.88616 1.42487 1.93169 1.86938 1.41354 1.95526 1.93163 1.31091 1.96529 1.95094 1.21585 0.93475 0.96233 1.00401 0.91066 1.21228 0.82762 0.94552 0.99504 1.42795 1.04651 1.04862 1.88175 1.19051 0.89637 0.87974 1.39528 0.91828 1.25307 0.96600 0.99849 1.02676 1.69847 1.04985 1.29480 1.58580 0.85591 0.78146 0.81035 0.78017 1.20679 1.21609 1.19319 1.21315 0.96102 0.83339 0.98695 0.92090 0.90444 0.92406 0.88696 0.90281 0.89358 0.81492 0.85703 0.88232 0.90882 0.85727 0.94130 0.94371 0.80409 0.93198 0.92026 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.44 71.24 0.60 -2.19 16 2 C -0.03 -0.45 6.10 -17.62 -0.11 -0.56 16 3 C -0.12 -0.95 10.01 71.23 0.71 -0.24 16 4 C -0.25 -4.19 8.93 23.43 0.21 -3.98 16 5 C 0.53 14.21 7.47 86.57 0.65 14.86 16 6 O -0.59 -21.78 12.74 -4.07 -0.05 -21.83 16 7 N -0.61 -13.85 2.97 -823.24 -2.45 -16.30 16 8 C 0.11 1.21 6.32 86.36 0.55 1.76 16 9 C -0.13 -1.61 5.11 30.67 0.16 -1.45 16 10 C -0.12 -2.29 1.79 -10.77 -0.02 -2.31 16 11 H 0.14 2.17 8.14 -2.38 -0.02 2.15 16 12 C 0.45 10.75 2.53 71.98 0.18 10.93 16 13 F -0.19 -5.33 16.34 44.97 0.73 -4.59 16 14 F -0.19 -5.56 14.16 44.97 0.64 -4.92 16 15 F -0.18 -3.59 16.50 44.97 0.74 -2.84 16 16 C -0.10 -2.84 1.81 -10.73 -0.02 -2.86 16 17 H 0.07 2.34 7.69 -2.38 -0.02 2.32 16 18 C 0.15 5.64 4.81 86.38 0.42 6.06 16 19 N -0.76 -37.68 5.13 -343.45 -1.76 -39.44 16 20 C -0.23 -13.79 10.47 84.03 0.88 -12.91 16 21 H 0.06 4.09 8.06 -2.91 -0.02 4.06 16 22 C -0.05 -3.23 5.50 84.86 0.47 -2.77 16 23 N -0.98 -64.77 13.97 21.65 0.30 -64.47 16 24 Si 0.94 49.74 27.73 68.60 1.90 51.64 16 25 H -0.28 -14.58 7.11 99.48 0.71 -13.88 16 26 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 27 H -0.27 -13.58 6.52 99.48 0.65 -12.93 16 28 C 0.13 3.80 5.43 86.35 0.47 4.27 16 29 H 0.06 1.56 7.98 -2.39 -0.02 1.54 16 30 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 31 H 0.06 1.64 6.27 -2.39 -0.01 1.62 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.57 8.12 -2.38 -0.02 0.55 16 34 H 0.09 0.44 8.07 -2.39 -0.02 0.42 16 35 H 0.17 1.39 5.91 -2.91 -0.02 1.38 16 36 H 0.13 0.68 5.37 -2.39 -0.01 0.66 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 1.10 8.03 -2.39 -0.02 1.08 16 39 H 0.12 0.84 7.60 -2.39 -0.02 0.82 16 40 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.04 1.58 5.70 -2.39 -0.01 1.56 16 42 H 0.36 17.99 4.28 -92.71 -0.40 17.60 16 43 H 0.26 16.33 8.31 -92.70 -0.77 15.56 16 44 H 0.06 2.38 5.77 -2.39 -0.01 2.37 16 45 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -81.24 360.96 5.77 -75.47 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.57 Total: 18.66 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 5.14 Total: 8.62 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -3.91 Total: -120.20 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 9 Polarization: -14.47 SS G_CDS: 2.11 Total: -12.36 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 1.90 Total: 51.64 kcal Total: -81.24 5.77 -75.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692150730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.799 kcal (2) G-P(sol) polarization free energy of solvation -81.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds