Wall clock time and date at job start Tue Mar 31 2020 17:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47464 * 2 1 4 4 C 1.50699 * 109.47138 * 120.00119 * 2 1 3 5 5 O 1.21283 * 120.00089 * 119.99621 * 4 2 1 6 6 N 1.34774 * 119.99978 * 299.99663 * 4 2 1 7 7 C 1.46505 * 120.00193 * 179.97438 * 6 4 2 8 8 H 1.08998 * 115.56323 * 9.29351 * 7 6 4 9 9 C 1.53029 * 117.50329 * 223.58553 * 7 6 4 10 10 C 1.52818 * 117.50253 * 155.00052 * 7 6 4 11 11 C 1.53181 * 117.71331 * 359.86462 * 10 7 6 12 12 C 1.53345 * 108.88794 * 158.80842 * 11 10 7 13 13 N 1.47169 * 108.64778 * 51.25447 * 12 11 10 14 14 C 1.36940 * 120.31644 * 123.14517 * 13 12 11 15 15 H 1.07998 * 119.99972 * 208.86840 * 14 13 12 16 16 C 1.38807 * 119.99637 * 28.86512 * 14 13 12 17 17 N 1.31616 * 120.00579 * 17.84274 * 16 14 13 18 18 Si 1.86801 * 119.99690 * 197.83513 * 16 14 13 19 19 H 1.48501 * 109.46958 * 60.00509 * 18 16 14 20 20 H 1.48499 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47662 * 300.00555 * 18 16 14 22 22 C 1.46847 * 119.29953 * 303.17196 * 13 12 11 23 23 C 1.53184 * 117.71278 * 215.09783 * 10 7 6 24 24 C 1.52998 * 109.46990 * 239.99654 * 2 1 3 25 25 F 1.39903 * 109.47400 * 300.00576 * 24 2 1 26 26 F 1.39904 * 109.46990 * 60.00269 * 24 2 1 27 27 F 1.39895 * 109.47283 * 180.02562 * 24 2 1 28 28 H 1.08997 * 109.46622 * 300.00110 * 1 2 3 29 29 H 1.09000 * 109.46784 * 59.99950 * 1 2 3 30 30 H 1.08999 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47365 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47161 * 299.99819 * 3 2 1 33 33 H 1.08997 * 109.47291 * 60.00300 * 3 2 1 34 34 H 0.96999 * 120.00056 * 0.02562 * 6 4 2 35 35 H 1.09008 * 117.50299 * 145.04798 * 9 7 6 36 36 H 1.09000 * 117.52848 * 359.97438 * 9 7 6 37 37 H 1.09008 * 109.58980 * 278.66324 * 11 10 7 38 38 H 1.09002 * 109.59219 * 38.94937 * 11 10 7 39 39 H 1.08996 * 109.58561 * 171.17756 * 12 11 10 40 40 H 1.09000 * 109.58311 * 291.58003 * 12 11 10 41 41 H 0.97002 * 120.00516 * 179.97438 * 17 16 14 42 42 H 1.08994 * 109.58523 * 297.10867 * 22 13 12 43 43 H 1.09000 * 109.68762 * 176.77159 * 22 13 12 44 44 H 1.08994 * 109.58730 * 320.90820 * 23 10 7 45 45 H 1.09000 * 109.58790 * 81.19753 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6966 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6508 8 1 2.9382 -1.7182 3.4746 9 6 1.2024 -1.1585 4.7953 10 6 2.3187 -0.1240 4.9363 11 6 1.9277 1.3560 4.8804 12 6 1.6133 1.8404 6.3009 13 7 2.7331 1.4726 7.1822 14 6 3.3928 2.4344 7.8998 15 1 4.4326 2.2979 8.1574 16 6 2.7248 3.5849 8.2961 17 7 1.4089 3.6124 8.3036 18 14 3.6935 5.0940 8.8191 19 1 4.5505 5.5464 7.6939 20 1 2.7531 6.1806 9.1935 21 1 4.5469 4.7547 9.9860 22 6 3.1356 0.0639 7.2829 23 6 3.4787 -0.4539 5.8809 24 6 2.0400 -0.7213 -1.2492 25 9 1.5735 -2.0403 -1.2492 26 9 1.5737 -0.0618 -2.3915 27 9 3.4389 -0.7219 -1.2490 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6769 1.9563 0.8900 34 1 1.1489 0.5385 2.5436 35 1 1.2933 -2.0790 5.3721 36 1 0.1867 -0.7874 4.6588 37 1 2.7540 1.9371 4.4707 38 1 1.0472 1.4779 4.2495 39 1 1.4868 2.9230 6.2982 40 1 0.6988 1.3647 6.6551 41 1 0.9421 4.4162 8.5808 42 1 2.3153 -0.5216 7.6980 43 1 4.0096 -0.0230 7.9284 44 1 3.6257 -1.5334 5.9159 45 1 4.3890 0.0275 5.5237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713098792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:35 Heat of formation + Delta-G solvation = -150.892093 kcal Electronic energy + Delta-G solvation = -30411.741566 eV Core-core repulsion = 25822.313830 eV Total energy + Delta-G solvation = -4589.427736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.28542 -47.78744 -47.66893 -40.45687 -38.68649 -35.73571 -35.56012 -33.09855 -31.46171 -30.18195 -28.29816 -27.97543 -26.46985 -24.40921 -24.06385 -22.52998 -21.76194 -20.85112 -20.20156 -18.91274 -18.49707 -18.31140 -17.80362 -16.74068 -16.55800 -15.83762 -15.38520 -15.00190 -14.78951 -14.46005 -14.26033 -14.20243 -14.11741 -13.88715 -13.85444 -13.73553 -13.60667 -13.46649 -13.28968 -13.04016 -12.76601 -12.74095 -12.66816 -12.35532 -11.90476 -11.77766 -11.61246 -11.56224 -11.44154 -11.02991 -10.75286 -10.56998 -10.36101 -10.13813 -9.97724 -9.78106 -9.65825 -9.44131 -8.60359 -8.49467 -6.68865 -5.83543 -3.26263 2.24322 2.30099 2.77902 3.35246 3.41150 3.41724 3.42773 3.72610 3.83809 4.08790 4.29039 4.36854 4.46176 4.49819 4.88235 4.99322 5.04690 5.05083 5.10050 5.14424 5.17205 5.34501 5.43624 5.52787 5.57090 5.61396 5.76091 5.97790 5.99973 6.04595 6.21492 6.36200 6.43425 6.49934 6.56758 6.63756 6.77553 6.94872 7.22805 7.28199 7.57912 7.75660 7.90721 8.41645 9.17023 9.80687 10.37303 11.24414 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.002788 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.236847 B =10041.906625 C =10592.100810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.150 4.150 4 C 0.529 3.471 5 O -0.523 6.523 6 N -0.683 5.683 7 C 0.067 3.933 8 H 0.133 0.867 9 C -0.180 4.180 10 C -0.095 4.095 11 C -0.105 4.105 12 C 0.174 3.826 13 N -0.590 5.590 14 C -0.254 4.254 15 H 0.064 0.936 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.150 3.850 23 C -0.098 4.098 24 C 0.476 3.524 25 F -0.172 7.172 26 F -0.181 7.181 27 F -0.171 7.171 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.403 0.597 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.528 -6.404 -17.654 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.207 4.207 4 C 0.313 3.687 5 O -0.399 6.399 6 N -0.332 5.332 7 C -0.038 4.038 8 H 0.151 0.849 9 C -0.219 4.219 10 C -0.096 4.096 11 C -0.144 4.144 12 C 0.048 3.952 13 N -0.312 5.312 14 C -0.384 4.384 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.023 3.977 23 C -0.138 4.138 24 C 0.421 3.579 25 F -0.154 7.154 26 F -0.162 7.162 27 F -0.152 7.152 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.119 -6.993 -17.690 19.276 hybrid contribution 0.138 1.047 0.093 1.060 sum -2.981 -5.946 -17.597 18.812 Atomic orbital electron populations 1.21965 0.88951 1.04665 1.05033 1.22112 1.00853 0.99134 0.91565 1.21979 1.03186 0.90491 1.05091 1.19603 0.80648 0.84387 0.84051 1.90794 1.37164 1.25595 1.86306 1.45215 1.52496 1.31206 1.04299 1.21948 1.01445 1.00421 0.80002 0.84903 1.23543 0.95769 1.01537 1.01010 1.21974 0.98137 0.94139 0.95356 1.21821 0.99128 0.91958 1.01523 1.20797 0.88927 1.01029 0.84422 1.44041 1.37622 1.00954 1.48609 1.19166 0.92834 0.97732 1.28660 0.91793 1.25031 0.95265 1.00016 0.99208 1.70018 1.05952 1.27811 1.50868 0.86395 0.79147 0.82823 0.78557 1.21033 1.21641 1.20862 1.20844 0.97634 0.86643 0.92543 1.21702 0.95893 0.99022 0.97177 1.19730 0.76042 0.77648 0.84467 1.93202 1.88311 1.37200 1.96651 1.93167 1.88584 1.80866 1.53609 1.93208 1.29105 1.96300 1.96637 0.89645 0.89778 0.90497 0.90370 0.89800 0.89486 0.76052 0.88298 0.88818 0.91971 0.93914 0.89178 0.96352 0.93591 0.96251 0.92624 0.92808 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.13 37.16 0.30 -0.74 16 2 C -0.13 -1.26 0.44 -155.66 -0.07 -1.33 16 3 C -0.15 -1.15 8.13 37.15 0.30 -0.85 16 4 C 0.53 6.69 6.25 -10.99 -0.07 6.62 16 5 O -0.52 -8.61 14.40 5.56 0.08 -8.53 16 6 N -0.68 -7.98 5.13 -53.88 -0.28 -8.25 16 7 C 0.07 0.91 6.14 -68.01 -0.42 0.49 16 8 H 0.13 1.95 7.40 -51.93 -0.38 1.57 16 9 C -0.18 -2.41 9.86 -26.80 -0.26 -2.68 16 10 C -0.09 -1.46 1.94 -154.49 -0.30 -1.76 16 11 C -0.10 -1.78 5.36 -26.46 -0.14 -1.92 16 12 C 0.17 3.85 5.42 -3.50 -0.02 3.83 16 13 N -0.59 -14.10 2.94 -172.00 -0.51 -14.60 16 14 C -0.25 -6.75 9.54 -15.06 -0.14 -6.90 16 15 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 16 C 0.00 0.09 4.89 -17.43 -0.09 0.01 16 17 N -0.90 -25.23 11.22 55.49 0.62 -24.61 16 18 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.01 6.51 -3.67 -0.02 2.98 16 23 C -0.10 -1.63 5.83 -26.45 -0.15 -1.79 16 24 C 0.48 5.45 1.95 37.16 0.07 5.53 16 25 F -0.17 -2.24 15.88 2.25 0.04 -2.20 16 26 F -0.18 -1.83 16.28 2.25 0.04 -1.79 16 27 F -0.17 -2.28 15.88 2.25 0.04 -2.25 16 28 H 0.08 0.47 7.56 -51.93 -0.39 0.08 16 29 H 0.08 0.47 7.80 -51.93 -0.41 0.06 16 30 H 0.08 0.58 7.80 -51.93 -0.41 0.18 16 31 H 0.08 0.68 7.80 -51.93 -0.41 0.27 16 32 H 0.08 0.51 7.80 -51.93 -0.41 0.10 16 33 H 0.09 0.56 7.56 -51.93 -0.39 0.17 16 34 H 0.40 3.91 5.95 -40.82 -0.24 3.67 16 35 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 38 H 0.04 0.60 6.74 -51.93 -0.35 0.25 16 39 H 0.09 2.25 5.95 -51.93 -0.31 1.94 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 44 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -30.72 366.49 -7.10 -37.82 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.61 Total: 1.34 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.01 Total: 1.50 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.16 Total: -47.46 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.72 -7.10 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713098792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.073 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds