Wall clock time and date at job start Tue Mar 31 2020 17:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47464 * 2 1 4 4 C 1.50699 * 109.47138 * 120.00119 * 2 1 3 5 5 O 1.21283 * 120.00089 * 119.99621 * 4 2 1 6 6 N 1.34774 * 119.99978 * 299.99663 * 4 2 1 7 7 C 1.46505 * 120.00193 * 179.97438 * 6 4 2 8 8 H 1.08998 * 115.56323 * 9.29351 * 7 6 4 9 9 C 1.53029 * 117.50329 * 223.58553 * 7 6 4 10 10 C 1.52818 * 117.50253 * 155.00052 * 7 6 4 11 11 C 1.53181 * 117.71331 * 359.86462 * 10 7 6 12 12 C 1.53345 * 108.88794 * 158.80842 * 11 10 7 13 13 N 1.47169 * 108.64778 * 51.25447 * 12 11 10 14 14 C 1.36940 * 120.31644 * 123.14517 * 13 12 11 15 15 H 1.07998 * 119.99972 * 208.86840 * 14 13 12 16 16 C 1.38807 * 119.99637 * 28.86512 * 14 13 12 17 17 N 1.31616 * 120.00579 * 17.84274 * 16 14 13 18 18 Si 1.86801 * 119.99690 * 197.83513 * 16 14 13 19 19 H 1.48501 * 109.46958 * 60.00509 * 18 16 14 20 20 H 1.48499 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47662 * 300.00555 * 18 16 14 22 22 C 1.46847 * 119.29953 * 303.17196 * 13 12 11 23 23 C 1.53184 * 117.71278 * 215.09783 * 10 7 6 24 24 C 1.52998 * 109.46990 * 239.99654 * 2 1 3 25 25 F 1.39903 * 109.47400 * 300.00576 * 24 2 1 26 26 F 1.39904 * 109.46990 * 60.00269 * 24 2 1 27 27 F 1.39895 * 109.47283 * 180.02562 * 24 2 1 28 28 H 1.08997 * 109.46622 * 300.00110 * 1 2 3 29 29 H 1.09000 * 109.46784 * 59.99950 * 1 2 3 30 30 H 1.08999 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47365 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47161 * 299.99819 * 3 2 1 33 33 H 1.08997 * 109.47291 * 60.00300 * 3 2 1 34 34 H 0.96999 * 120.00056 * 0.02562 * 6 4 2 35 35 H 1.09008 * 117.50299 * 145.04798 * 9 7 6 36 36 H 1.09000 * 117.52848 * 359.97438 * 9 7 6 37 37 H 1.09008 * 109.58980 * 278.66324 * 11 10 7 38 38 H 1.09002 * 109.59219 * 38.94937 * 11 10 7 39 39 H 1.08996 * 109.58561 * 171.17756 * 12 11 10 40 40 H 1.09000 * 109.58311 * 291.58003 * 12 11 10 41 41 H 0.97002 * 120.00516 * 179.97438 * 17 16 14 42 42 H 1.08994 * 109.58523 * 297.10867 * 22 13 12 43 43 H 1.09000 * 109.68762 * 176.77159 * 22 13 12 44 44 H 1.08994 * 109.58730 * 320.90820 * 23 10 7 45 45 H 1.09000 * 109.58790 * 81.19753 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6966 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6508 8 1 2.9382 -1.7182 3.4746 9 6 1.2024 -1.1585 4.7953 10 6 2.3187 -0.1240 4.9363 11 6 1.9277 1.3560 4.8804 12 6 1.6133 1.8404 6.3009 13 7 2.7331 1.4726 7.1822 14 6 3.3928 2.4344 7.8998 15 1 4.4326 2.2979 8.1574 16 6 2.7248 3.5849 8.2961 17 7 1.4089 3.6124 8.3036 18 14 3.6935 5.0940 8.8191 19 1 4.5505 5.5464 7.6939 20 1 2.7531 6.1806 9.1935 21 1 4.5469 4.7547 9.9860 22 6 3.1356 0.0639 7.2829 23 6 3.4787 -0.4539 5.8809 24 6 2.0400 -0.7213 -1.2492 25 9 1.5735 -2.0403 -1.2492 26 9 1.5737 -0.0618 -2.3915 27 9 3.4389 -0.7219 -1.2490 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6769 1.9563 0.8900 34 1 1.1489 0.5385 2.5436 35 1 1.2933 -2.0790 5.3721 36 1 0.1867 -0.7874 4.6588 37 1 2.7540 1.9371 4.4707 38 1 1.0472 1.4779 4.2495 39 1 1.4868 2.9230 6.2982 40 1 0.6988 1.3647 6.6551 41 1 0.9421 4.4162 8.5808 42 1 2.3153 -0.5216 7.6980 43 1 4.0096 -0.0230 7.9284 44 1 3.6257 -1.5334 5.9159 45 1 4.3890 0.0275 5.5237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713098792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:34 Heat of formation + Delta-G solvation = -168.563740 kcal Electronic energy + Delta-G solvation = -30412.507866 eV Core-core repulsion = 25822.313830 eV Total energy + Delta-G solvation = -4590.194036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.18153 -48.65727 -48.62460 -41.48733 -39.93905 -37.14717 -36.55368 -34.45501 -33.10145 -31.73105 -29.89691 -28.52344 -27.24658 -26.22463 -25.01778 -24.01957 -23.03868 -22.21683 -21.19016 -19.91730 -19.69406 -19.40384 -18.82196 -18.18869 -17.68307 -16.96711 -16.74093 -16.30524 -15.88636 -15.63327 -15.41567 -15.38148 -15.17154 -15.03465 -14.91882 -14.81033 -14.75523 -14.67866 -14.36810 -14.15541 -13.90479 -13.74381 -13.49460 -13.32533 -13.23170 -13.03275 -12.91176 -12.58519 -12.54306 -12.47089 -12.35144 -12.30931 -11.99489 -11.76168 -11.38524 -11.26140 -11.09409 -10.68450 -10.46562 -9.74599 -8.59840 -7.84713 -5.30045 1.28106 1.43760 1.48701 1.50144 1.57042 1.87348 2.53352 2.57906 2.88838 2.97462 2.99919 3.29917 3.49443 3.61882 3.65136 3.73863 3.81534 3.86850 3.99125 4.14140 4.52153 4.53062 4.54627 4.58980 4.61718 4.65326 4.72357 4.86904 4.88530 4.95382 5.02245 5.04188 5.07756 5.10277 5.23548 5.31433 5.38023 5.42250 5.55876 5.67840 5.81767 6.29254 6.43148 6.96490 7.18948 7.90872 8.41480 9.20049 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.002788 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.236847 B =10041.906625 C =10592.100810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.151 4.151 4 C 0.528 3.472 5 O -0.565 6.565 6 N -0.673 5.673 7 C 0.083 3.917 8 H 0.125 0.875 9 C -0.166 4.166 10 C -0.114 4.114 11 C -0.089 4.089 12 C 0.180 3.820 13 N -0.609 5.609 14 C -0.266 4.266 15 H 0.060 0.940 16 C -0.045 4.045 17 N -0.930 5.930 18 Si 0.961 3.039 19 H -0.279 1.279 20 H -0.293 1.293 21 H -0.279 1.279 22 C 0.147 3.853 23 C -0.088 4.088 24 C 0.468 3.532 25 F -0.184 7.184 26 F -0.172 7.172 27 F -0.186 7.186 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.415 0.585 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.001 0.999 41 H 0.250 0.750 42 H 0.018 0.982 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -6.279 -18.916 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.208 4.208 4 C 0.314 3.686 5 O -0.443 6.443 6 N -0.323 5.323 7 C -0.022 4.022 8 H 0.143 0.857 9 C -0.205 4.205 10 C -0.116 4.116 11 C -0.128 4.128 12 C 0.054 3.946 13 N -0.333 5.333 14 C -0.396 4.396 15 H 0.078 0.922 16 C -0.241 4.241 17 N -0.576 5.576 18 Si 0.790 3.210 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.127 4.127 24 C 0.414 3.586 25 F -0.166 7.166 26 F -0.153 7.153 27 F -0.168 7.168 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.254 0.746 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.019 0.981 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.818 -6.869 -18.965 20.529 hybrid contribution 0.365 0.947 0.487 1.126 sum -3.452 -5.923 -18.477 19.708 Atomic orbital electron populations 1.22072 0.86592 1.04880 1.07022 1.22137 1.02525 0.99280 0.88790 1.22071 1.02443 0.89321 1.06964 1.20111 0.79750 0.83860 0.84924 1.90780 1.39050 1.27570 1.86938 1.45117 1.52219 1.31377 1.03617 1.21719 1.01296 0.99203 0.80024 0.85741 1.23634 0.95741 1.00873 1.00207 1.21820 0.99101 0.93624 0.97009 1.21552 1.00151 0.92810 0.98289 1.20622 0.87901 0.98913 0.87160 1.44317 1.37847 1.02109 1.48990 1.19449 0.92986 0.98727 1.28464 0.92196 1.25695 0.96065 1.02371 0.99926 1.70155 1.07171 1.28091 1.52170 0.85439 0.77798 0.79570 0.78212 1.20529 1.21874 1.20511 1.20952 0.97170 0.84870 0.94873 1.21528 0.95979 1.00256 0.94977 1.20100 0.75423 0.77461 0.85632 1.93175 1.88349 1.38287 1.96772 1.93179 1.88350 1.80528 1.53287 1.93176 1.30494 1.96348 1.96773 0.87617 0.87897 0.91195 0.91706 0.87785 0.87814 0.74637 0.87322 0.87605 0.92979 0.90602 0.92530 0.98122 0.94058 0.96438 0.93221 0.90243 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.13 71.98 0.58 -1.00 16 2 C -0.12 -2.07 0.44 -52.93 -0.02 -2.09 16 3 C -0.15 -1.89 8.13 71.98 0.58 -1.31 16 4 C 0.53 12.34 6.25 87.66 0.55 12.89 16 5 O -0.56 -18.11 14.40 -3.04 -0.04 -18.15 16 6 N -0.67 -13.90 5.13 -442.77 -2.27 -16.17 16 7 C 0.08 2.06 6.14 44.94 0.28 2.33 16 8 H 0.12 3.41 7.40 -2.39 -0.02 3.39 16 9 C -0.17 -3.97 9.86 30.55 0.30 -3.66 16 10 C -0.11 -3.28 1.94 -52.17 -0.10 -3.38 16 11 C -0.09 -2.87 5.36 30.77 0.17 -2.71 16 12 C 0.18 7.97 5.42 86.37 0.47 8.44 16 13 N -0.61 -29.40 2.94 -698.09 -2.05 -31.46 16 14 C -0.27 -14.32 9.54 84.03 0.80 -13.52 16 15 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 16 C -0.04 -2.43 4.89 84.86 0.41 -2.02 16 17 N -0.93 -53.01 11.22 21.65 0.24 -52.77 16 18 Si 0.96 43.74 29.59 68.60 2.03 45.77 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.15 5.86 6.51 86.43 0.56 6.43 16 23 C -0.09 -2.81 5.83 30.77 0.18 -2.63 16 24 C 0.47 10.12 1.95 71.98 0.14 10.26 16 25 F -0.18 -4.65 15.88 44.97 0.71 -3.94 16 26 F -0.17 -3.15 16.28 44.97 0.73 -2.42 16 27 F -0.19 -4.89 15.88 44.97 0.71 -4.18 16 28 H 0.11 0.71 7.56 -2.39 -0.02 0.69 16 29 H 0.10 0.75 7.80 -2.39 -0.02 0.73 16 30 H 0.07 0.88 7.80 -2.39 -0.02 0.86 16 31 H 0.06 1.01 7.80 -2.39 -0.02 0.99 16 32 H 0.10 0.91 7.80 -2.39 -0.02 0.89 16 33 H 0.10 0.96 7.56 -2.39 -0.02 0.94 16 34 H 0.42 6.54 5.95 -92.71 -0.55 5.99 16 35 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.08 1.91 6.74 -2.39 -0.02 1.89 16 39 H 0.06 2.88 5.95 -2.39 -0.01 2.87 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 1.98 7.92 -2.39 -0.02 1.97 16 44 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 45 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -68.17 366.49 5.43 -62.74 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.46 Total: 12.52 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 4.90 Total: 8.04 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -4.08 Total: -100.39 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.04 Total: -18.15 kcal Atomic # 9 Polarization: -12.69 SS G_CDS: 2.16 Total: -10.53 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.17 5.43 -62.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713098792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.820 kcal (2) G-P(sol) polarization free energy of solvation -68.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds