Wall clock time and date at job start Tue Mar 31 2020 18:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 H 1.08997 * 109.46867 * 55.00509 * 3 2 1 5 5 C 1.53003 * 109.46869 * 175.00288 * 3 2 1 6 6 N 1.46499 * 109.47119 * 174.99820 * 5 3 2 7 7 C 1.34770 * 120.00391 * 179.97438 * 6 5 3 8 8 O 1.21291 * 119.99965 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00390 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.47269 * 180.02562 * 9 7 6 11 11 C 1.38250 * 119.94408 * 90.00062 * 10 9 7 12 12 C 1.38197 * 120.11470 * 179.75136 * 11 10 9 13 13 C 1.38711 * 120.06659 * 0.24891 * 12 11 10 14 14 C 1.38973 * 119.81785 * 359.93957 * 13 12 11 15 15 C 1.38204 * 119.94370 * 270.25341 * 10 9 7 16 16 O 1.36105 * 120.78446 * 180.21837 * 14 13 12 17 17 C 1.43183 * 116.69352 * 342.70476 * 16 14 13 18 18 C 1.53478 * 108.23250 * 46.26316 * 17 16 14 19 19 O 1.36107 * 119.39787 * 179.80055 * 13 12 11 20 20 N 1.46502 * 109.47040 * 294.99845 * 3 2 1 21 21 C 1.36938 * 119.99739 * 85.00238 * 20 3 2 22 22 H 1.07997 * 119.99825 * 359.97438 * 21 20 3 23 23 C 1.38810 * 119.99750 * 180.02562 * 21 20 3 24 24 N 1.31609 * 120.00072 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99568 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47084 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47183 * 119.99806 * 25 23 21 28 28 H 1.48500 * 109.46846 * 239.99658 * 25 23 21 29 29 H 1.09003 * 109.47335 * 299.99773 * 1 2 3 30 30 H 1.08999 * 109.47159 * 59.99944 * 1 2 3 31 31 H 1.09006 * 109.47175 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46889 * 239.99623 * 2 1 3 33 33 H 1.08999 * 109.47159 * 120.00056 * 2 1 3 34 34 H 1.09000 * 109.47605 * 54.99840 * 5 3 2 35 35 H 1.09001 * 109.47312 * 294.99941 * 5 3 2 36 36 H 0.97001 * 120.00060 * 0.02562 * 6 5 3 37 37 H 1.09006 * 109.46937 * 60.00177 * 9 7 6 38 38 H 1.09001 * 109.47056 * 300.00371 * 9 7 6 39 39 H 1.08002 * 119.94561 * 0.03259 * 11 10 9 40 40 H 1.07998 * 119.97290 * 180.26724 * 12 11 10 41 41 H 1.07991 * 119.96550 * 0.03922 * 15 10 9 42 42 H 1.08996 * 109.71545 * 286.57588 * 17 16 14 43 43 H 1.09004 * 109.71088 * 165.93942 * 17 16 14 44 44 H 1.08997 * 109.70826 * 180.57117 * 18 17 16 45 45 H 1.08996 * 109.74284 * 59.96401 * 18 17 16 46 46 H 0.96995 * 119.99843 * 265.00316 * 20 3 2 47 47 H 0.97005 * 119.99796 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 7 4.0631 2.8167 0.0058 7 6 5.3856 3.0629 0.0867 8 8 6.1635 2.1482 0.2581 9 6 5.8982 4.4747 -0.0360 10 6 7.4001 4.4765 0.0876 11 6 8.1856 4.3388 -1.0416 12 6 9.5633 4.3451 -0.9329 13 6 10.1616 4.4844 0.3107 14 6 9.3719 4.6190 1.4463 15 6 7.9898 4.6105 1.3303 16 8 9.9383 4.7614 2.6757 17 6 11.3157 4.3895 2.7964 18 6 12.0827 4.9981 1.6145 19 8 11.5196 4.4847 0.4025 20 7 1.6524 2.0975 -1.2518 21 6 0.4156 2.6735 -1.3688 22 1 -0.2742 2.6446 -0.5384 23 6 0.0482 3.2936 -2.5551 24 7 0.8887 3.3284 -3.5672 25 14 -1.6387 4.0800 -2.7143 26 1 -2.3879 3.9059 -1.4441 27 1 -1.4844 5.5283 -3.0040 28 1 -2.3851 3.4305 -3.8218 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8310 -0.6660 35 1 3.8499 1.0376 1.0959 36 1 3.4411 3.5483 -0.1309 37 1 5.4673 5.0877 0.7557 38 1 5.6133 4.8817 -1.0063 39 1 7.7219 4.2307 -2.0110 40 1 10.1747 4.2416 -1.8171 41 1 7.3739 4.7132 2.2114 42 1 11.4067 3.3035 2.7736 43 1 11.7194 4.7732 3.7333 44 1 13.1349 4.7208 1.6773 45 1 11.9869 6.0837 1.6333 46 1 2.2719 2.1231 -1.9978 47 1 0.6321 3.7621 -4.3961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714121595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:48 Heat of formation + Delta-G solvation = -81.927999 kcal Electronic energy + Delta-G solvation = -28245.533429 eV Core-core repulsion = 24200.952941 eV Total energy + Delta-G solvation = -4044.580488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38596 -39.53553 -37.86175 -37.40234 -36.60806 -33.63674 -32.60951 -32.31717 -31.02442 -29.87956 -29.56187 -28.14125 -26.70013 -24.68908 -23.66947 -22.86777 -22.36877 -20.81759 -20.15744 -19.65820 -18.71760 -17.46045 -17.41629 -17.26488 -16.56908 -15.73144 -15.58689 -15.31016 -15.20886 -14.86822 -14.58328 -14.26755 -14.15247 -13.96445 -13.91809 -13.61171 -13.20347 -13.12939 -12.96629 -12.71072 -12.28158 -12.01870 -11.85557 -11.63554 -11.39748 -11.30594 -11.18865 -10.97800 -10.91009 -10.74009 -10.63514 -10.43039 -10.19671 -10.00530 -9.57575 -9.51496 -8.97806 -8.66009 -8.58120 -8.08756 -7.04962 -5.83557 -3.12509 1.20120 1.27077 2.81322 2.99350 3.02462 3.37796 3.44584 3.46501 3.47602 3.85737 3.96754 4.48126 4.50776 4.52675 4.58881 4.71108 4.89192 5.07196 5.13830 5.22515 5.28681 5.30884 5.42636 5.44170 5.47073 5.56891 5.60131 5.84925 5.92532 5.96210 5.98108 6.02941 6.08362 6.17966 6.42949 6.49146 6.54975 6.57583 6.58204 6.61198 6.72987 6.93133 7.03029 7.23378 7.27690 7.65389 7.98194 8.33949 8.62684 9.46063 10.01215 10.37295 11.38379 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.002225 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.035271 B =12579.364534 C =13360.291979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.116 3.884 6 N -0.713 5.713 7 C 0.511 3.489 8 O -0.547 6.547 9 C -0.102 4.102 10 C -0.052 4.052 11 C -0.098 4.098 12 C -0.112 4.112 13 C 0.044 3.956 14 C 0.048 3.952 15 C -0.098 4.098 16 O -0.309 6.309 17 C 0.021 3.979 18 C 0.021 3.979 19 O -0.309 6.309 20 N -0.721 5.721 21 C -0.236 4.236 22 H 0.073 0.927 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.410 0.590 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.902 3.862 10.976 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.365 5.365 7 C 0.297 3.703 8 O -0.425 6.425 9 C -0.142 4.142 10 C -0.053 4.053 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.000 4.000 14 C 0.004 3.996 15 C -0.116 4.116 16 O -0.224 6.224 17 C -0.055 4.055 18 C -0.055 4.055 19 O -0.224 6.224 20 N -0.363 5.363 21 C -0.367 4.367 22 H 0.091 0.909 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.247 0.753 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.095 0.905 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.094 0.906 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.319 3.282 11.161 22.551 hybrid contribution -0.894 0.674 -0.378 1.182 sum 18.425 3.956 10.783 21.711 Atomic orbital electron populations 1.21770 0.95750 0.99618 1.03228 1.22070 0.96939 0.98474 1.00012 1.20564 0.90023 0.92743 0.91391 0.92873 1.21643 0.95491 0.82797 1.00967 1.45974 1.07066 1.10750 1.72676 1.20398 0.82478 0.90674 0.76773 1.90695 1.56034 1.46386 1.49397 1.20652 0.92105 0.95727 1.05726 1.19039 0.94234 0.99664 0.92364 1.20816 0.92265 0.99669 0.98826 1.20365 0.94581 1.03328 0.94767 1.18858 0.82301 1.05137 0.93715 1.18757 0.92710 1.04815 0.83346 1.20211 0.90887 1.02534 0.98011 1.86299 1.25818 1.82568 1.27673 1.23605 0.80709 1.00981 1.00215 1.23593 0.98925 0.99194 0.83751 1.86295 1.17341 1.80202 1.38583 1.42461 1.16761 1.65827 1.11300 1.19249 0.91935 1.27536 0.97954 0.90870 1.24729 0.98040 1.01650 0.96396 1.69666 1.35102 1.48996 1.03965 0.86199 0.84153 0.78876 0.77445 1.20573 1.21931 1.21974 0.94133 0.89678 0.94900 0.92541 0.93881 0.91941 0.92029 0.75318 0.87900 0.87304 0.84876 0.84824 0.84986 0.90527 0.86229 0.86276 0.90611 0.78091 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 37.15 0.34 -2.25 16 2 C -0.13 -2.30 5.61 -26.73 -0.15 -2.45 16 3 C 0.16 2.96 2.59 -67.93 -0.18 2.78 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.12 1.94 5.23 -4.04 -0.02 1.92 16 6 N -0.71 -11.38 5.39 -60.29 -0.32 -11.71 16 7 C 0.51 8.14 7.82 -10.99 -0.09 8.05 16 8 O -0.55 -10.60 16.03 5.55 0.09 -10.51 16 9 C -0.10 -1.26 5.83 -29.04 -0.17 -1.43 16 10 C -0.05 -0.69 4.37 -104.63 -0.46 -1.15 16 11 C -0.10 -1.24 9.69 -39.59 -0.38 -1.63 16 12 C -0.11 -1.40 9.96 -39.42 -0.39 -1.79 16 13 C 0.04 0.58 6.49 -39.13 -0.25 0.33 16 14 C 0.05 0.65 6.49 -39.14 -0.25 0.39 16 15 C -0.10 -1.30 9.62 -39.42 -0.38 -1.68 16 16 O -0.31 -3.70 10.42 -32.86 -0.34 -4.04 16 17 C 0.02 0.16 7.26 37.41 0.27 0.43 16 18 C 0.02 0.16 7.26 37.41 0.27 0.43 16 19 O -0.31 -3.59 10.42 -32.86 -0.34 -3.93 16 20 N -0.72 -16.05 4.51 -53.42 -0.24 -16.29 16 21 C -0.24 -5.86 7.75 -15.06 -0.12 -5.97 16 22 H 0.07 1.79 7.32 -52.49 -0.38 1.41 16 23 C -0.01 -0.31 5.50 -17.44 -0.10 -0.41 16 24 N -0.93 -26.28 13.06 55.49 0.72 -25.56 16 25 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.41 6.51 8.14 -40.82 -0.33 6.17 16 37 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 38 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.39 9.41 7.80 -40.82 -0.32 9.09 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -31.78 388.77 -8.89 -40.67 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -7.24 Total: 13.76 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -2.05 Total: -4.42 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.16 Total: -53.55 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.60 Total: -18.48 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.78 -8.89 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714121595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.259 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds