Wall clock time and date at job start Tue Mar 31 2020 18:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 H 1.08997 * 109.46867 * 55.00509 * 3 2 1 5 5 C 1.53003 * 109.46869 * 175.00288 * 3 2 1 6 6 N 1.46499 * 109.47119 * 174.99820 * 5 3 2 7 7 C 1.34770 * 120.00391 * 179.97438 * 6 5 3 8 8 O 1.21291 * 119.99965 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00390 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.47269 * 180.02562 * 9 7 6 11 11 C 1.38250 * 119.94408 * 90.00062 * 10 9 7 12 12 C 1.38197 * 120.11470 * 179.75136 * 11 10 9 13 13 C 1.38711 * 120.06659 * 0.24891 * 12 11 10 14 14 C 1.38973 * 119.81785 * 359.93957 * 13 12 11 15 15 C 1.38204 * 119.94370 * 270.25341 * 10 9 7 16 16 O 1.36105 * 120.78446 * 180.21837 * 14 13 12 17 17 C 1.43183 * 116.69352 * 342.70476 * 16 14 13 18 18 C 1.53478 * 108.23250 * 46.26316 * 17 16 14 19 19 O 1.36107 * 119.39787 * 179.80055 * 13 12 11 20 20 N 1.46502 * 109.47040 * 294.99845 * 3 2 1 21 21 C 1.36938 * 119.99739 * 85.00238 * 20 3 2 22 22 H 1.07997 * 119.99825 * 359.97438 * 21 20 3 23 23 C 1.38810 * 119.99750 * 180.02562 * 21 20 3 24 24 N 1.31609 * 120.00072 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99568 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47084 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47183 * 119.99806 * 25 23 21 28 28 H 1.48500 * 109.46846 * 239.99658 * 25 23 21 29 29 H 1.09003 * 109.47335 * 299.99773 * 1 2 3 30 30 H 1.08999 * 109.47159 * 59.99944 * 1 2 3 31 31 H 1.09006 * 109.47175 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46889 * 239.99623 * 2 1 3 33 33 H 1.08999 * 109.47159 * 120.00056 * 2 1 3 34 34 H 1.09000 * 109.47605 * 54.99840 * 5 3 2 35 35 H 1.09001 * 109.47312 * 294.99941 * 5 3 2 36 36 H 0.97001 * 120.00060 * 0.02562 * 6 5 3 37 37 H 1.09006 * 109.46937 * 60.00177 * 9 7 6 38 38 H 1.09001 * 109.47056 * 300.00371 * 9 7 6 39 39 H 1.08002 * 119.94561 * 0.03259 * 11 10 9 40 40 H 1.07998 * 119.97290 * 180.26724 * 12 11 10 41 41 H 1.07991 * 119.96550 * 0.03922 * 15 10 9 42 42 H 1.08996 * 109.71545 * 286.57588 * 17 16 14 43 43 H 1.09004 * 109.71088 * 165.93942 * 17 16 14 44 44 H 1.08997 * 109.70826 * 180.57117 * 18 17 16 45 45 H 1.08996 * 109.74284 * 59.96401 * 18 17 16 46 46 H 0.96995 * 119.99843 * 265.00316 * 20 3 2 47 47 H 0.97005 * 119.99796 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 7 4.0631 2.8167 0.0058 7 6 5.3856 3.0629 0.0867 8 8 6.1635 2.1482 0.2581 9 6 5.8982 4.4747 -0.0360 10 6 7.4001 4.4765 0.0876 11 6 8.1856 4.3388 -1.0416 12 6 9.5633 4.3451 -0.9329 13 6 10.1616 4.4844 0.3107 14 6 9.3719 4.6190 1.4463 15 6 7.9898 4.6105 1.3303 16 8 9.9383 4.7614 2.6757 17 6 11.3157 4.3895 2.7964 18 6 12.0827 4.9981 1.6145 19 8 11.5196 4.4847 0.4025 20 7 1.6524 2.0975 -1.2518 21 6 0.4156 2.6735 -1.3688 22 1 -0.2742 2.6446 -0.5384 23 6 0.0482 3.2936 -2.5551 24 7 0.8887 3.3284 -3.5672 25 14 -1.6387 4.0800 -2.7143 26 1 -2.3879 3.9059 -1.4441 27 1 -1.4844 5.5283 -3.0040 28 1 -2.3851 3.4305 -3.8218 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8310 -0.6660 35 1 3.8499 1.0376 1.0959 36 1 3.4411 3.5483 -0.1309 37 1 5.4673 5.0877 0.7557 38 1 5.6133 4.8817 -1.0063 39 1 7.7219 4.2307 -2.0110 40 1 10.1747 4.2416 -1.8171 41 1 7.3739 4.7132 2.2114 42 1 11.4067 3.3035 2.7736 43 1 11.7194 4.7732 3.7333 44 1 13.1349 4.7208 1.6773 45 1 11.9869 6.0837 1.6333 46 1 2.2719 2.1231 -1.9978 47 1 0.6321 3.7621 -4.3961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714121595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:47 Heat of formation + Delta-G solvation = -102.567845 kcal Electronic energy + Delta-G solvation = -28246.428440 eV Core-core repulsion = 24200.952941 eV Total energy + Delta-G solvation = -4045.475499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22703 -40.77435 -38.89472 -38.23504 -38.09101 -35.15302 -34.12711 -33.46175 -31.87014 -31.48337 -30.57220 -29.46501 -27.80330 -25.69331 -25.25052 -24.06492 -23.54218 -21.78773 -21.55315 -20.91054 -19.59143 -19.19139 -18.24553 -18.19457 -17.88663 -17.05734 -16.79025 -16.39695 -16.28775 -15.96131 -15.73195 -15.39837 -15.29009 -15.14466 -14.98358 -14.85154 -14.59039 -14.53216 -14.12988 -13.90292 -13.76306 -13.06029 -12.95427 -12.79256 -12.78091 -12.72654 -12.52816 -12.31996 -12.09243 -12.04427 -11.98757 -11.84154 -11.59277 -11.44080 -11.31413 -10.95100 -10.77629 -9.93625 -9.60538 -9.02354 -8.93854 -7.84700 -5.11252 0.23558 0.31222 1.51199 1.54137 1.61237 1.74584 2.02203 2.26417 2.37789 2.62269 2.78252 3.30059 3.49436 3.67011 3.71382 3.92228 3.94071 4.00471 4.06428 4.09870 4.15033 4.30486 4.36230 4.42032 4.49694 4.51387 4.57470 4.58784 4.61987 4.69233 4.80028 4.91015 4.93695 5.10091 5.12805 5.14590 5.16743 5.23270 5.52732 5.54623 5.62597 5.64771 5.65830 5.73893 5.89985 6.35907 6.40987 6.69591 7.35470 7.44051 8.15718 8.40972 9.38349 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.002225 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.035271 B =12579.364534 C =13360.291979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.060 0.940 5 C 0.124 3.876 6 N -0.711 5.711 7 C 0.511 3.489 8 O -0.584 6.584 9 C -0.094 4.094 10 C -0.064 4.064 11 C -0.108 4.108 12 C -0.121 4.121 13 C 0.036 3.964 14 C 0.037 3.963 15 C -0.111 4.111 16 O -0.324 6.324 17 C 0.013 3.987 18 C 0.015 3.985 19 O -0.324 6.324 20 N -0.726 5.726 21 C -0.212 4.212 22 H 0.080 0.920 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.957 3.043 26 H -0.267 1.267 27 H -0.298 1.298 28 H -0.304 1.304 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.412 0.588 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.074 0.926 43 H 0.156 0.844 44 H 0.154 0.846 45 H 0.082 0.918 46 H 0.373 0.627 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.435 4.067 12.830 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.057 3.943 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.363 5.363 7 C 0.299 3.701 8 O -0.464 6.464 9 C -0.134 4.134 10 C -0.064 4.064 11 C -0.126 4.126 12 C -0.139 4.139 13 C -0.009 4.009 14 C -0.008 4.008 15 C -0.130 4.130 16 O -0.240 6.240 17 C -0.062 4.062 18 C -0.059 4.059 19 O -0.239 6.239 20 N -0.367 5.367 21 C -0.344 4.344 22 H 0.098 0.902 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.788 3.212 26 H -0.191 1.191 27 H -0.226 1.226 28 H -0.232 1.232 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.249 0.751 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.173 0.827 44 H 0.172 0.828 45 H 0.100 0.900 46 H 0.205 0.795 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 19.845 3.481 13.076 24.019 hybrid contribution -0.942 0.533 -0.819 1.357 sum 18.903 4.013 12.257 22.884 Atomic orbital electron populations 1.21699 0.95936 1.00552 1.01835 1.22001 0.96665 0.97573 1.00913 1.20698 0.90949 0.93114 0.89561 0.92225 1.21505 0.94271 0.83268 1.01071 1.45974 1.07340 1.10420 1.72522 1.20969 0.81902 0.91761 0.75501 1.90677 1.56764 1.47886 1.51109 1.20665 0.91697 0.93565 1.07444 1.19174 0.94658 1.00075 0.92539 1.21033 0.92618 0.99697 0.99283 1.20619 0.94810 1.03127 0.95395 1.19027 0.83144 1.04936 0.93813 1.18921 0.92976 1.04850 0.84068 1.20404 0.91328 1.02909 0.98362 1.86266 1.27995 1.82641 1.27068 1.23965 0.78938 1.01164 1.02115 1.23956 1.00377 0.99547 0.82062 1.86265 1.16487 1.80437 1.40719 1.42571 1.15779 1.66003 1.12331 1.19519 0.92449 1.25053 0.97395 0.90228 1.25342 1.00825 1.03628 0.96717 1.69802 1.36663 1.51065 1.04298 0.85304 0.81097 0.77466 0.77304 1.19121 1.22554 1.23245 0.93154 0.93208 0.92967 0.93733 0.90851 0.93481 0.90676 0.75110 0.85362 0.85930 0.83951 0.83407 0.84370 0.90810 0.82670 0.82811 0.89979 0.79508 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.13 -4.23 5.61 30.59 0.17 -4.06 16 3 C 0.17 5.75 2.59 44.99 0.12 5.87 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 4.02 5.23 86.38 0.45 4.47 16 6 N -0.71 -22.09 5.39 -463.06 -2.49 -24.58 16 7 C 0.51 15.93 7.82 87.66 0.69 16.62 16 8 O -0.58 -22.54 16.03 -3.06 -0.05 -22.58 16 9 C -0.09 -2.22 5.83 29.10 0.17 -2.05 16 10 C -0.06 -1.66 4.37 -19.87 -0.09 -1.74 16 11 C -0.11 -2.74 9.69 22.26 0.22 -2.53 16 12 C -0.12 -3.01 9.96 22.37 0.22 -2.79 16 13 C 0.04 0.92 6.49 22.56 0.15 1.07 16 14 C 0.04 0.97 6.49 22.56 0.15 1.12 16 15 C -0.11 -2.95 9.62 22.37 0.22 -2.73 16 16 O -0.32 -7.52 10.42 -82.52 -0.86 -8.38 16 17 C 0.01 0.18 7.26 72.14 0.52 0.70 16 18 C 0.02 0.20 7.26 72.14 0.52 0.72 16 19 O -0.32 -7.21 10.42 -82.54 -0.86 -8.07 16 20 N -0.73 -31.98 4.51 -322.94 -1.46 -33.44 16 21 C -0.21 -10.40 7.75 84.03 0.65 -9.75 16 22 H 0.08 3.77 7.32 -2.91 -0.02 3.74 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.97 -55.58 13.06 21.65 0.28 -55.30 16 25 Si 0.96 43.74 29.55 68.60 2.03 45.77 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.41 12.64 8.14 -92.71 -0.75 11.89 16 37 H 0.13 2.34 8.09 -2.38 -0.02 2.32 16 38 H 0.12 2.55 8.08 -2.39 -0.02 2.54 16 39 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 40 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 41 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.16 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.37 18.35 7.80 -92.71 -0.72 17.63 16 47 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -68.91 388.77 1.39 -67.52 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -0.49 Total: 41.64 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 5.28 Total: -2.58 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.67 Total: -113.31 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -1.77 Total: -39.04 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.91 1.39 -67.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714121595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.049 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds