Wall clock time and date at job start Tue Mar 31 2020 17:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47703 * 2 1 4 4 N 1.46496 * 109.46775 * 120.00525 * 2 1 3 5 5 C 1.34781 * 120.00056 * 155.00235 * 4 2 1 6 6 O 1.21585 * 119.99797 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99907 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99827 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47195 * 179.97438 * 8 7 5 10 10 O 1.45197 * 109.47438 * 64.99480 * 9 8 7 11 11 C 1.34224 * 117.00446 * 179.97438 * 10 9 8 12 12 O 1.20830 * 119.99648 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.50708 * 109.47368 * 180.02562 * 13 11 10 15 15 C 1.37631 * 120.12797 * 265.00428 * 14 13 11 16 16 C 1.38617 * 120.24935 * 179.97438 * 15 14 13 17 17 C 1.38659 * 120.49753 * 0.02562 * 16 15 14 18 18 C 1.37591 * 120.24814 * 0.02562 * 17 16 15 19 19 C 1.40703 * 120.12406 * 84.72361 * 14 13 11 20 20 C 1.41394 * 120.24704 * 0.02562 * 19 14 13 21 21 H 1.07999 * 119.99576 * 333.89506 * 20 19 14 22 22 C 1.39936 * 120.00084 * 153.89383 * 20 19 14 23 23 N 1.30823 * 120.00218 * 343.71483 * 22 20 19 24 24 Si 1.86806 * 120.00088 * 163.71714 * 22 20 19 25 25 H 1.48497 * 109.46918 * 60.00210 * 24 22 20 26 26 H 1.48502 * 109.47252 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46900 * 300.00273 * 24 22 20 28 28 H 1.09002 * 109.46984 * 300.00485 * 1 2 3 29 29 H 1.09005 * 109.46754 * 59.99580 * 1 2 3 30 30 H 1.08993 * 109.47571 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47413 * 239.99833 * 2 1 3 32 32 H 1.08996 * 109.47097 * 300.00549 * 3 2 1 33 33 H 1.09010 * 109.46701 * 59.99821 * 3 2 1 34 34 H 1.08994 * 109.47346 * 179.97438 * 3 2 1 35 35 H 0.96998 * 120.00489 * 334.99239 * 4 2 1 36 36 H 0.96998 * 120.00638 * 359.97438 * 7 5 4 37 37 H 1.09002 * 109.47436 * 59.99420 * 8 7 5 38 38 H 1.08998 * 109.47284 * 299.99670 * 8 7 5 39 39 H 1.09003 * 109.46904 * 304.99787 * 9 8 7 40 40 H 1.09006 * 109.47034 * 185.00142 * 9 8 7 41 41 H 1.09000 * 109.47361 * 300.00222 * 13 11 10 42 42 H 1.08997 * 109.47049 * 60.00152 * 13 11 10 43 43 H 1.08005 * 119.87632 * 359.97438 * 15 14 13 44 44 H 1.07993 * 119.74862 * 180.02562 * 16 15 14 45 45 H 1.07998 * 119.87354 * 180.02562 * 17 16 15 46 46 H 1.08008 * 120.12341 * 179.97438 * 18 17 16 47 47 H 0.97001 * 120.00340 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 3.2402 -1.2593 1.1943 6 8 3.9372 -1.1993 0.1999 7 7 3.6892 -1.8952 2.2946 8 6 5.0172 -2.5137 2.2925 9 6 5.2797 -3.1627 3.6529 10 8 4.3467 -4.2567 3.8554 11 6 4.4448 -4.9357 5.0090 12 8 5.2823 -4.6259 5.8230 13 6 3.5105 -6.0844 5.2891 14 6 3.8272 -6.6716 6.6405 15 6 4.6651 -7.7587 6.7422 16 6 4.9585 -8.3005 7.9839 17 6 4.4124 -7.7558 9.1362 18 6 3.5714 -6.6696 9.0582 19 6 3.2720 -6.1069 7.8035 20 6 2.4141 -4.9867 7.7117 21 1 2.4974 -4.3100 6.8741 22 6 1.4572 -4.7549 8.7060 23 7 1.1319 -5.7118 9.5367 24 14 0.6441 -3.0790 8.8474 25 1 -0.0695 -2.7669 7.5831 26 1 -0.3255 -3.0925 9.9721 27 1 1.6805 -2.0457 9.0989 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.4622 -0.7388 1.9894 36 1 3.1330 -1.9434 3.0879 37 1 5.7728 -1.7514 2.1021 38 1 5.0630 -3.2734 1.5122 39 1 5.1468 -2.4214 4.4409 40 1 6.3001 -3.5451 3.6822 41 1 2.4812 -5.7258 5.2813 42 1 3.6347 -6.8490 4.5222 43 1 5.0957 -8.1913 5.8511 44 1 5.6173 -9.1533 8.0543 45 1 4.6482 -8.1857 10.0984 46 1 3.1468 -6.2472 9.9570 47 1 0.4688 -5.5510 10.2262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828987708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:44 Heat of formation + Delta-G solvation = -113.056352 kcal Electronic energy + Delta-G solvation = -28197.320524 eV Core-core repulsion = 24151.390209 eV Total energy + Delta-G solvation = -4045.930314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.28498 -39.86660 -37.73806 -36.66774 -35.94202 -34.59028 -33.71015 -32.02563 -31.71048 -29.56979 -29.31390 -27.51076 -27.05055 -25.14639 -23.31988 -21.81918 -21.11429 -20.97057 -20.82794 -19.41913 -18.64151 -17.26613 -17.20582 -16.81453 -16.11402 -15.85508 -15.53381 -15.26624 -14.90113 -14.67367 -14.56387 -14.09029 -13.87134 -13.71003 -13.46929 -13.02242 -12.77514 -12.67981 -12.60572 -12.54291 -12.37074 -11.90908 -11.68310 -11.65305 -11.57760 -11.28112 -11.23798 -11.15568 -11.05946 -10.78972 -10.48745 -10.46105 -10.24734 -9.82047 -9.57211 -9.46797 -9.43491 -9.23675 -8.97988 -7.41634 -7.39277 -6.81843 -4.44314 2.54210 2.63665 2.82214 2.88087 3.00318 3.01780 3.11253 3.20504 3.28963 3.85799 4.08376 4.56943 4.58184 4.68099 4.78383 4.96748 5.04072 5.24045 5.26690 5.31821 5.39078 5.48195 5.58539 5.63920 5.68185 5.73808 5.81380 5.92092 5.97986 6.04159 6.21897 6.33450 6.35026 6.37378 6.44137 6.68344 6.77969 6.87630 6.99713 7.21190 7.33427 7.55540 7.83127 7.88184 7.96315 8.05040 8.21933 8.38932 8.49013 8.55898 8.81654 8.91886 10.12164 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.002849 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.650401 B = 9825.094846 C =11631.245495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.155 3.845 3 C -0.164 4.164 4 N -0.744 5.744 5 C 0.706 3.294 6 O -0.596 6.596 7 N -0.742 5.742 8 C 0.144 3.856 9 C 0.051 3.949 10 O -0.367 6.367 11 C 0.458 3.542 12 O -0.491 6.491 13 C -0.041 4.041 14 C -0.196 4.196 15 C -0.077 4.077 16 C -0.239 4.239 17 C -0.104 4.104 18 C -0.159 4.159 19 C 0.130 3.870 20 C -0.459 4.459 21 H 0.073 0.927 22 C 0.078 3.922 23 N -0.792 5.792 24 Si 0.904 3.096 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.264 1.264 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.402 0.598 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.118 0.882 47 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 9.648 -13.225 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 C -0.223 4.223 4 N -0.400 5.400 5 C 0.406 3.594 6 O -0.475 6.475 7 N -0.398 5.398 8 C 0.020 3.980 9 C -0.024 4.024 10 O -0.285 6.285 11 C 0.301 3.699 12 O -0.376 6.376 13 C -0.078 4.078 14 C -0.197 4.197 15 C -0.095 4.095 16 C -0.259 4.259 17 C -0.122 4.122 18 C -0.178 4.178 19 C 0.128 3.872 20 C -0.488 4.488 21 H 0.091 0.909 22 C -0.140 4.140 23 N -0.417 5.417 24 Si 0.729 3.271 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.189 1.189 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.231 0.769 36 H 0.236 0.764 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.136 0.864 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.108 9.761 -13.711 16.867 hybrid contribution -0.773 0.764 1.086 1.537 sum -1.881 10.526 -12.624 16.544 Atomic orbital electron populations 1.22090 0.94164 1.02793 1.02871 1.20776 0.93578 0.92584 0.88105 1.22215 1.02236 0.95989 1.01857 1.45266 1.17214 1.60062 1.17452 1.15917 0.81783 0.78279 0.83454 1.90908 1.57360 1.65948 1.33253 1.45097 1.19656 1.59516 1.15532 1.21271 0.83806 0.96726 0.96225 1.23194 0.93792 0.88488 0.96914 1.86576 1.56766 1.44062 1.41120 1.24522 0.84199 0.83103 0.78084 1.90655 1.35138 1.65767 1.46014 1.19983 0.98488 0.92233 0.97105 1.19057 1.08512 1.00199 0.91972 1.20331 0.97060 0.96173 0.95920 1.20331 1.08317 1.04192 0.93036 1.20708 0.98049 0.97228 0.96243 1.21312 1.00120 0.98200 0.98151 1.17342 0.89030 0.90666 0.90154 1.19429 1.14200 1.08395 1.06801 0.90908 1.25879 0.96073 0.97765 0.94302 1.69801 1.25497 1.32027 1.14361 0.86430 0.79171 0.82731 0.78797 1.18990 1.20232 1.18874 0.92045 0.90917 0.91828 0.89454 0.91766 0.92610 0.92026 0.76950 0.76418 0.89646 0.90410 0.90680 0.89697 0.87490 0.89352 0.89519 0.89472 0.89425 0.86402 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.38 37.16 0.35 -0.62 16 2 C 0.15 1.31 3.18 -67.94 -0.22 1.10 16 3 C -0.16 -1.32 9.48 37.16 0.35 -0.96 16 4 N -0.74 -7.02 5.08 -58.68 -0.30 -7.32 16 5 C 0.71 8.84 8.53 -86.92 -0.74 8.10 16 6 O -0.60 -9.58 16.01 5.29 0.08 -9.50 16 7 N -0.74 -8.29 5.51 -65.22 -0.36 -8.65 16 8 C 0.14 1.60 6.07 -4.04 -0.02 1.58 16 9 C 0.05 0.63 5.60 37.16 0.21 0.84 16 10 O -0.37 -5.65 10.17 -39.24 -0.40 -6.05 16 11 C 0.46 8.67 7.57 36.00 0.27 8.94 16 12 O -0.49 -10.92 15.78 -18.75 -0.30 -11.22 16 13 C -0.04 -0.78 5.29 -29.03 -0.15 -0.93 16 14 C -0.20 -4.54 4.43 -103.91 -0.46 -5.00 16 15 C -0.08 -1.71 9.66 -39.66 -0.38 -2.09 16 16 C -0.24 -5.40 10.05 -39.29 -0.39 -5.79 16 17 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 18 C -0.16 -4.10 8.68 -38.88 -0.34 -4.44 16 19 C 0.13 3.36 5.56 -106.82 -0.59 2.77 16 20 C -0.46 -11.56 8.14 -37.75 -0.31 -11.86 16 21 H 0.07 1.76 6.67 -52.49 -0.35 1.41 16 22 C 0.08 1.88 5.16 -17.35 -0.09 1.79 16 23 N -0.79 -19.74 10.95 55.55 0.61 -19.13 16 24 Si 0.90 17.93 29.59 -169.99 -5.03 12.90 16 25 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 26 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.40 2.90 8.62 -40.82 -0.35 2.55 16 36 H 0.40 4.01 8.49 -40.82 -0.35 3.67 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 40 H 0.08 1.02 8.13 -51.93 -0.42 0.59 16 41 H 0.11 2.01 7.08 -51.93 -0.37 1.64 16 42 H 0.09 1.43 8.05 -51.93 -0.42 1.01 16 43 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 44 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 45 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 46 H 0.12 3.13 6.20 -52.48 -0.33 2.80 16 47 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 LS Contribution 397.80 15.07 5.99 5.99 Total: -1.00 -31.43 397.80 -9.80 -41.23 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.18 Total: 11.18 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.92 Total: -9.45 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.05 Total: -35.10 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.61 Total: -26.76 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.43 -9.80 -41.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828987708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.831 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds