Wall clock time and date at job start Tue Mar 31 2020 21:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 O 1.42897 * 109.47159 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47093 * 119.99772 * 2 1 3 6 6 C 1.34770 * 120.00046 * 299.72467 * 5 2 1 7 7 O 1.21592 * 120.00094 * 0.27701 * 6 5 2 8 8 N 1.34779 * 120.00004 * 180.27079 * 6 5 2 9 9 C 1.46505 * 120.00176 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47118 * 180.02562 * 9 8 6 11 11 C 1.38301 * 119.92838 * 269.73129 * 10 9 8 12 12 C 1.38097 * 120.07086 * 179.72652 * 11 10 9 13 13 C 1.38885 * 119.92574 * 0.57107 * 12 11 10 14 14 O 1.35745 * 120.06722 * 179.68515 * 13 12 11 15 15 C 1.34838 * 116.99820 * 174.47966 * 14 13 12 16 16 H 1.07995 * 119.99877 * 5.05836 * 15 14 13 17 17 C 1.38657 * 119.99821 * 185.05389 * 15 14 13 18 18 N 1.31557 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47065 * 60.00351 * 19 17 15 21 21 H 1.48498 * 109.46974 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47079 * 299.99743 * 19 17 15 23 23 C 1.38874 * 119.86306 * 359.69529 * 13 12 11 24 24 C 1.38104 * 119.93106 * 0.02562 * 23 13 12 25 25 C 1.52994 * 109.47015 * 239.99605 * 2 1 3 26 26 C 1.52999 * 117.49947 * 13.75230 * 25 2 1 27 27 C 1.52994 * 117.50501 * 305.08811 * 25 2 1 28 28 H 1.08999 * 109.47134 * 300.00015 * 1 2 3 29 29 H 1.08997 * 109.47014 * 60.00050 * 1 2 3 30 30 H 1.09004 * 109.47189 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47133 * 299.99877 * 3 2 1 32 32 H 1.08999 * 109.47127 * 59.99981 * 3 2 1 33 33 H 0.96699 * 114.00167 * 179.97438 * 4 3 2 34 34 H 0.96997 * 119.99446 * 119.99716 * 5 2 1 35 35 H 0.96998 * 120.00137 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.47232 * 300.00693 * 9 8 6 37 37 H 1.09001 * 109.46894 * 60.00352 * 9 8 6 38 38 H 1.08006 * 119.96616 * 359.97338 * 11 10 9 39 39 H 1.07997 * 120.04223 * 180.26704 * 12 11 10 40 40 H 0.97000 * 120.00019 * 180.02562 * 18 17 15 41 41 H 1.08004 * 120.03768 * 179.97438 * 23 13 12 42 42 H 1.08003 * 119.96608 * 179.97438 * 24 23 13 43 43 H 1.09009 * 115.54885 * 159.41371 * 25 2 1 44 44 H 1.08998 * 117.50100 * 359.97438 * 26 25 2 45 45 H 1.08997 * 117.50199 * 145.02069 * 26 25 2 46 46 H 1.09000 * 117.50252 * 214.97825 * 27 25 2 47 47 H 1.09003 * 117.49671 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 7 2.0184 -0.6906 1.1962 6 6 1.6974 -0.2269 2.4203 7 8 0.9983 0.7617 2.5318 8 7 2.1511 -0.8590 3.5207 9 6 1.8027 -0.3546 4.8513 10 6 2.4312 -1.2333 5.9021 11 6 1.7384 -2.3247 6.3934 12 6 2.3138 -3.1351 7.3522 13 6 3.5849 -2.8461 7.8316 14 8 4.1506 -3.6371 8.7787 15 6 5.4281 -3.3690 9.1169 16 1 5.9272 -2.5065 8.7006 17 6 6.1008 -4.2006 9.9991 18 7 5.4929 -5.2515 10.5059 19 14 7.8703 -3.8287 10.4682 20 1 7.9416 -2.4916 11.1104 21 1 8.3577 -4.8603 11.4187 22 1 8.7180 -3.8382 9.2490 23 6 4.2757 -1.7462 7.3402 24 6 3.6971 -0.9430 6.3772 25 6 2.0400 -0.7213 -1.2492 26 6 1.0326 -0.9947 -2.3678 27 6 1.5400 -2.1461 -1.4959 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8623 2.3259 0.0002 34 1 2.5760 -1.4792 1.1072 35 1 2.7090 -1.6475 3.4318 36 1 2.1725 0.6648 4.9618 37 1 0.7193 -0.3630 4.9708 38 1 0.7479 -2.5459 6.0241 39 1 1.7741 -3.9898 7.7325 40 1 5.9634 -5.8331 11.1234 41 1 5.2642 -1.5187 7.7113 42 1 4.2337 -0.0872 5.9949 43 1 3.0647 -0.4900 -1.5402 44 1 0.0064 -0.6611 -2.2136 45 1 1.3946 -0.9438 -3.3946 46 1 2.2356 -2.8521 -1.9496 47 1 0.8474 -2.5694 -0.7685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762281625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:45 Heat of formation + Delta-G solvation = -52.585177 kcal Electronic energy + Delta-G solvation = -28132.603567 eV Core-core repulsion = 24089.295479 eV Total energy + Delta-G solvation = -4043.308087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.60758 -39.20742 -38.49213 -36.84870 -36.46874 -34.40319 -34.04996 -32.37418 -31.03739 -30.25661 -29.33294 -26.61041 -25.84633 -24.75566 -23.73523 -22.67079 -22.03911 -20.88574 -20.59042 -19.40351 -18.44127 -18.05242 -17.48627 -17.08059 -16.53669 -16.00619 -15.45612 -15.24376 -14.78414 -14.69286 -14.53160 -14.26276 -13.95173 -13.77859 -13.68376 -13.37429 -13.25209 -12.86883 -12.76941 -12.65465 -12.31494 -12.16484 -11.87215 -11.66568 -11.53457 -11.38447 -11.34970 -10.93632 -10.78244 -10.73317 -10.67659 -10.50412 -10.49603 -10.28407 -9.69920 -9.42024 -9.17457 -8.90094 -8.69473 -8.26963 -7.31750 -6.52219 -4.11192 2.04535 2.14501 2.78373 3.09513 3.10445 3.13275 3.30851 3.53798 3.91064 4.00852 4.21390 4.28248 4.51106 4.58835 4.69394 4.77124 5.02655 5.09592 5.17174 5.20665 5.23377 5.27628 5.31042 5.46958 5.49959 5.51896 5.56694 5.68606 5.70476 5.77953 5.84136 5.91017 5.96049 6.12008 6.13737 6.36875 6.52730 6.60934 6.68279 6.81928 6.94301 7.04981 7.17844 7.29601 7.36254 7.44262 7.72931 7.92447 8.14214 8.71427 8.93022 9.61354 10.65234 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019440 B = 0.002019 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.978782 B =13863.342042 C =14057.704150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.233 3.767 3 C 0.064 3.936 4 O -0.568 6.568 5 N -0.732 5.732 6 C 0.707 3.293 7 O -0.600 6.600 8 N -0.738 5.738 9 C 0.199 3.801 10 C -0.213 4.213 11 C -0.054 4.054 12 C -0.196 4.196 13 C 0.160 3.840 14 O -0.174 6.174 15 C -0.394 4.394 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.237 4.237 24 C -0.050 4.050 25 C -0.157 4.157 26 C -0.175 4.175 27 C -0.176 4.176 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.376 0.624 34 H 0.396 0.604 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 9.366 -22.785 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.146 3.854 3 C -0.015 4.015 4 O -0.373 6.373 5 N -0.387 5.387 6 C 0.407 3.593 7 O -0.480 6.480 8 N -0.393 5.393 9 C 0.076 3.924 10 C -0.215 4.215 11 C -0.073 4.073 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.076 6.076 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.257 4.257 24 C -0.069 4.069 25 C -0.175 4.175 26 C -0.212 4.212 27 C -0.214 4.214 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.222 0.778 34 H 0.230 0.770 35 H 0.230 0.770 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.145 0.855 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.375 9.237 -22.335 25.270 hybrid contribution 1.631 0.034 0.162 1.639 sum -5.744 9.271 -22.174 24.711 Atomic orbital electron populations 1.22340 0.93777 1.02834 1.03764 1.19504 0.93253 0.90113 0.82536 1.22657 0.81161 0.96535 1.01121 1.86436 1.19651 1.33419 1.97776 1.45090 1.56868 1.33042 1.03674 1.15973 0.80166 0.82825 0.80318 1.90812 1.43439 1.27699 1.86019 1.45515 1.55935 1.32883 1.04951 1.19796 0.98668 0.95815 0.78074 1.19234 0.97120 1.00976 1.04153 1.20532 0.98133 0.93346 0.95249 1.20216 0.95374 1.03229 1.02702 1.19439 0.92352 0.89859 0.87797 1.83979 1.27862 1.49457 1.46313 1.21306 0.85854 1.12072 1.27731 0.88985 1.25316 1.00139 0.94959 0.96054 1.70027 1.37387 1.13405 1.28594 0.85765 0.80283 0.78512 0.78806 1.19431 1.20222 1.19436 1.21158 1.02502 0.98629 1.03369 1.20649 0.93735 0.97481 0.94998 1.22456 1.00049 0.98689 0.96333 1.23142 0.99495 1.02951 0.95598 1.22990 1.03917 0.91103 1.03340 0.89608 0.91598 0.91950 0.93529 0.90810 0.77772 0.76979 0.76963 0.91921 0.91843 0.86987 0.86414 0.91841 0.85455 0.87410 0.86602 0.87941 0.88675 0.88601 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 7.06 37.16 0.26 -1.30 16 2 C 0.23 2.22 0.67 -131.82 -0.09 2.13 16 3 C 0.06 0.64 5.73 37.16 0.21 0.85 16 4 O -0.57 -5.67 12.81 -35.23 -0.45 -6.12 16 5 N -0.73 -7.79 4.93 -52.42 -0.26 -8.05 16 6 C 0.71 9.51 7.98 -86.92 -0.69 8.82 16 7 O -0.60 -9.67 12.55 5.28 0.07 -9.60 16 8 N -0.74 -9.55 5.55 -66.41 -0.37 -9.92 16 9 C 0.20 2.85 5.80 -5.19 -0.03 2.82 16 10 C -0.21 -3.45 5.25 -104.58 -0.55 -4.00 16 11 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 12 C -0.20 -3.96 9.99 -39.39 -0.39 -4.35 16 13 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 14 O -0.17 -4.82 9.76 0.04 0.00 -4.82 16 15 C -0.39 -10.73 9.49 30.89 0.29 -10.44 16 16 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 19 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.24 -4.94 9.17 -39.40 -0.36 -5.31 16 24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 25 C -0.16 -1.24 4.98 -90.63 -0.45 -1.69 16 26 C -0.17 -1.12 9.66 -26.69 -0.26 -1.37 16 27 C -0.18 -1.21 9.81 -26.70 -0.26 -1.47 16 28 H 0.09 1.02 6.17 -51.93 -0.32 0.70 16 29 H 0.07 0.49 6.74 -51.93 -0.35 0.14 16 30 H 0.06 0.55 6.96 -51.93 -0.36 0.19 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.91 6.15 -51.93 -0.32 0.59 16 33 H 0.38 2.33 9.12 45.56 0.42 2.75 16 34 H 0.40 3.67 8.46 -40.82 -0.35 3.32 16 35 H 0.40 4.67 8.48 -40.82 -0.35 4.32 16 36 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 42 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 43 H 0.12 1.02 7.62 -51.92 -0.40 0.62 16 44 H 0.10 0.62 5.89 -51.93 -0.31 0.31 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.70 7.28 -51.93 -0.38 0.32 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -31.98 384.06 -8.72 -40.70 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -5.79 Total: 14.33 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.44 Total: -13.40 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.13 Total: -41.93 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.38 Total: -20.55 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.98 -8.72 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762281625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.882 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds