Wall clock time and date at job start Tue Mar 31 2020 21:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 O 1.42897 * 109.47159 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47093 * 119.99772 * 2 1 3 6 6 C 1.34770 * 120.00046 * 299.72467 * 5 2 1 7 7 O 1.21592 * 120.00094 * 0.27701 * 6 5 2 8 8 N 1.34779 * 120.00004 * 180.27079 * 6 5 2 9 9 C 1.46505 * 120.00176 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47118 * 180.02562 * 9 8 6 11 11 C 1.38301 * 119.92838 * 269.73129 * 10 9 8 12 12 C 1.38097 * 120.07086 * 179.72652 * 11 10 9 13 13 C 1.38885 * 119.92574 * 0.57107 * 12 11 10 14 14 O 1.35745 * 120.06722 * 179.68515 * 13 12 11 15 15 C 1.34838 * 116.99820 * 174.47966 * 14 13 12 16 16 H 1.07995 * 119.99877 * 5.05836 * 15 14 13 17 17 C 1.38657 * 119.99821 * 185.05389 * 15 14 13 18 18 N 1.31557 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47065 * 60.00351 * 19 17 15 21 21 H 1.48498 * 109.46974 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47079 * 299.99743 * 19 17 15 23 23 C 1.38874 * 119.86306 * 359.69529 * 13 12 11 24 24 C 1.38104 * 119.93106 * 0.02562 * 23 13 12 25 25 C 1.52994 * 109.47015 * 239.99605 * 2 1 3 26 26 C 1.52999 * 117.49947 * 13.75230 * 25 2 1 27 27 C 1.52994 * 117.50501 * 305.08811 * 25 2 1 28 28 H 1.08999 * 109.47134 * 300.00015 * 1 2 3 29 29 H 1.08997 * 109.47014 * 60.00050 * 1 2 3 30 30 H 1.09004 * 109.47189 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47133 * 299.99877 * 3 2 1 32 32 H 1.08999 * 109.47127 * 59.99981 * 3 2 1 33 33 H 0.96699 * 114.00167 * 179.97438 * 4 3 2 34 34 H 0.96997 * 119.99446 * 119.99716 * 5 2 1 35 35 H 0.96998 * 120.00137 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.47232 * 300.00693 * 9 8 6 37 37 H 1.09001 * 109.46894 * 60.00352 * 9 8 6 38 38 H 1.08006 * 119.96616 * 359.97338 * 11 10 9 39 39 H 1.07997 * 120.04223 * 180.26704 * 12 11 10 40 40 H 0.97000 * 120.00019 * 180.02562 * 18 17 15 41 41 H 1.08004 * 120.03768 * 179.97438 * 23 13 12 42 42 H 1.08003 * 119.96608 * 179.97438 * 24 23 13 43 43 H 1.09009 * 115.54885 * 159.41371 * 25 2 1 44 44 H 1.08998 * 117.50100 * 359.97438 * 26 25 2 45 45 H 1.08997 * 117.50199 * 145.02069 * 26 25 2 46 46 H 1.09000 * 117.50252 * 214.97825 * 27 25 2 47 47 H 1.09003 * 117.49671 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 7 2.0184 -0.6906 1.1962 6 6 1.6974 -0.2269 2.4203 7 8 0.9983 0.7617 2.5318 8 7 2.1511 -0.8590 3.5207 9 6 1.8027 -0.3546 4.8513 10 6 2.4312 -1.2333 5.9021 11 6 1.7384 -2.3247 6.3934 12 6 2.3138 -3.1351 7.3522 13 6 3.5849 -2.8461 7.8316 14 8 4.1506 -3.6371 8.7787 15 6 5.4281 -3.3690 9.1169 16 1 5.9272 -2.5065 8.7006 17 6 6.1008 -4.2006 9.9991 18 7 5.4929 -5.2515 10.5059 19 14 7.8703 -3.8287 10.4682 20 1 7.9416 -2.4916 11.1104 21 1 8.3577 -4.8603 11.4187 22 1 8.7180 -3.8382 9.2490 23 6 4.2757 -1.7462 7.3402 24 6 3.6971 -0.9430 6.3772 25 6 2.0400 -0.7213 -1.2492 26 6 1.0326 -0.9947 -2.3678 27 6 1.5400 -2.1461 -1.4959 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8623 2.3259 0.0002 34 1 2.5760 -1.4792 1.1072 35 1 2.7090 -1.6475 3.4318 36 1 2.1725 0.6648 4.9618 37 1 0.7193 -0.3630 4.9708 38 1 0.7479 -2.5459 6.0241 39 1 1.7741 -3.9898 7.7325 40 1 5.9634 -5.8331 11.1234 41 1 5.2642 -1.5187 7.7113 42 1 4.2337 -0.0872 5.9949 43 1 3.0647 -0.4900 -1.5402 44 1 0.0064 -0.6611 -2.2136 45 1 1.3946 -0.9438 -3.3946 46 1 2.2356 -2.8521 -1.9496 47 1 0.8474 -2.5694 -0.7685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762281625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:43 Heat of formation + Delta-G solvation = -76.302197 kcal Electronic energy + Delta-G solvation = -28133.632014 eV Core-core repulsion = 24089.295479 eV Total energy + Delta-G solvation = -4044.336535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.52884 -40.81023 -39.44541 -38.41880 -37.18593 -35.59645 -34.95545 -34.27151 -32.09507 -31.81000 -30.59513 -27.66563 -27.31408 -26.17874 -24.53730 -23.64212 -23.18723 -22.21004 -21.76693 -20.20426 -19.87814 -19.40642 -18.81648 -18.23179 -17.44271 -16.78767 -16.63980 -16.38089 -16.13925 -16.10453 -15.92923 -15.53536 -15.31569 -15.09278 -14.76525 -14.63823 -14.36923 -14.22568 -13.96964 -13.67837 -13.46599 -13.28125 -13.05304 -13.00719 -12.64890 -12.51121 -12.37916 -12.20853 -12.14147 -12.11214 -12.03560 -11.37565 -11.20485 -11.15338 -11.04121 -10.80903 -10.61613 -10.19248 -9.81600 -9.67611 -9.01286 -8.48126 -6.16432 0.53671 0.58015 1.35675 1.45230 1.51520 1.82229 2.17346 2.26742 2.77276 2.94086 3.15442 3.33687 3.47964 3.48942 3.61208 3.87897 3.90422 4.04110 4.12670 4.17020 4.17793 4.41153 4.47969 4.53240 4.54556 4.57243 4.72165 4.76689 4.79018 4.81867 4.88829 4.96159 5.03051 5.04835 5.14489 5.23576 5.26990 5.29951 5.41212 5.52224 5.59507 5.68815 5.69290 5.76508 6.01398 6.09681 6.17002 6.86074 6.96492 7.17638 7.69071 7.75717 8.74398 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019440 B = 0.002019 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.978782 B =13863.342042 C =14057.704150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.227 3.773 3 C 0.067 3.933 4 O -0.581 6.581 5 N -0.722 5.722 6 C 0.704 3.296 7 O -0.626 6.626 8 N -0.735 5.735 9 C 0.207 3.793 10 C -0.181 4.181 11 C -0.042 4.042 12 C -0.204 4.204 13 C 0.122 3.878 14 O -0.229 6.229 15 C -0.414 4.414 16 H 0.103 0.897 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.244 4.244 24 C -0.045 4.045 25 C -0.162 4.162 26 C -0.164 4.164 27 C -0.174 4.174 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.391 0.609 34 H 0.404 0.596 35 H 0.404 0.596 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.147 0.853 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.137 0.863 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 10.909 -25.750 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.141 3.859 3 C -0.012 4.012 4 O -0.388 6.388 5 N -0.376 5.376 6 C 0.405 3.595 7 O -0.508 6.508 8 N -0.390 5.390 9 C 0.083 3.917 10 C -0.182 4.182 11 C -0.061 4.061 12 C -0.224 4.224 13 C 0.071 3.929 14 O -0.135 6.135 15 C -0.490 4.490 16 H 0.120 0.880 17 C -0.220 4.220 18 N -0.556 5.556 19 Si 0.837 3.163 20 H -0.182 1.182 21 H -0.197 1.197 22 H -0.181 1.181 23 C -0.263 4.263 24 C -0.064 4.064 25 C -0.181 4.181 26 C -0.201 4.201 27 C -0.211 4.211 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.239 0.761 34 H 0.239 0.761 35 H 0.239 0.761 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.165 0.835 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.155 0.845 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.555 10.812 -25.369 28.593 hybrid contribution 1.438 -0.244 0.775 1.652 sum -6.117 10.568 -24.594 27.458 Atomic orbital electron populations 1.22275 0.93526 1.02941 1.03353 1.19665 0.93460 0.90132 0.82665 1.22589 0.81220 0.96712 1.00688 1.86396 1.19652 1.35011 1.97749 1.45075 1.56328 1.33043 1.03201 1.16066 0.79983 0.82529 0.80957 1.90813 1.44620 1.28896 1.86467 1.45292 1.56154 1.33148 1.04398 1.19668 0.98816 0.95229 0.77961 1.19508 0.96043 0.99774 1.02866 1.20873 0.99336 0.92370 0.93514 1.20452 0.94545 1.03959 1.03411 1.19990 0.93731 0.90712 0.88439 1.83948 1.28501 1.51834 1.49182 1.21788 0.86352 1.12701 1.28182 0.87967 1.26584 1.04988 0.94603 0.95796 1.70173 1.39641 1.15289 1.30526 0.84661 0.74135 0.78699 0.78834 1.18213 1.19706 1.18119 1.21239 1.02362 0.98552 1.04157 1.20928 0.94249 0.97541 0.93683 1.22287 1.00072 0.99517 0.96203 1.23240 0.99309 1.01844 0.95724 1.23031 1.03886 0.90825 1.03392 0.92313 0.89675 0.91528 0.91687 0.93469 0.76060 0.76099 0.76110 0.91726 0.91187 0.83521 0.86643 0.91792 0.86207 0.84546 0.87330 0.87385 0.87478 0.87839 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 7.06 71.98 0.51 -2.19 16 2 C 0.23 3.88 0.67 3.60 0.00 3.88 16 3 C 0.07 1.22 5.73 71.98 0.41 1.63 16 4 O -0.58 -10.55 12.81 -148.98 -1.91 -12.46 16 5 N -0.72 -13.88 4.93 -438.01 -2.16 -16.05 16 6 C 0.70 17.47 7.98 179.06 1.43 18.90 16 7 O -0.63 -19.23 12.55 -4.00 -0.05 -19.28 16 8 N -0.73 -16.90 5.55 -482.28 -2.68 -19.57 16 9 C 0.21 5.21 5.80 85.63 0.50 5.71 16 10 C -0.18 -5.31 5.25 -19.84 -0.10 -5.41 16 11 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 12 C -0.20 -8.27 9.99 22.39 0.22 -8.05 16 13 C 0.12 5.87 6.65 22.58 0.15 6.02 16 14 O -0.23 -13.44 9.76 -22.77 -0.22 -13.66 16 15 C -0.41 -23.63 9.49 67.92 0.64 -22.99 16 16 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 17 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 18 N -0.92 -55.62 13.67 21.61 0.30 -55.33 16 19 Si 1.02 42.12 29.55 68.60 2.03 44.15 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 C -0.24 -10.16 9.17 22.39 0.21 -9.96 16 24 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 25 C -0.16 -2.16 4.98 -10.80 -0.05 -2.22 16 26 C -0.16 -1.60 9.66 30.62 0.30 -1.31 16 27 C -0.17 -1.93 9.81 30.62 0.30 -1.62 16 28 H 0.06 1.33 6.17 -2.39 -0.01 1.31 16 29 H 0.08 1.05 6.74 -2.39 -0.02 1.03 16 30 H 0.07 1.03 6.96 -2.38 -0.02 1.01 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 1.13 6.15 -2.39 -0.01 1.11 16 33 H 0.39 4.20 9.12 -74.06 -0.68 3.52 16 34 H 0.40 6.54 8.46 -92.71 -0.78 5.76 16 35 H 0.40 8.27 8.48 -92.71 -0.79 7.48 16 36 H 0.06 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.07 1.75 8.08 -2.39 -0.02 1.74 16 38 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 42 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.11 1.66 7.62 -2.38 -0.02 1.64 16 44 H 0.11 0.95 5.89 -2.39 -0.01 0.93 16 45 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.09 1.11 7.28 -2.39 -0.02 1.10 16 Total: -1.00 -73.48 384.06 -0.50 -73.98 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: -1.21 Total: 38.97 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 5.41 Total: -20.74 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -4.54 Total: -90.95 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -2.18 Total: -45.41 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -73.48 -0.50 -73.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762281625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.324 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds