Wall clock time and date at job start Tue Mar 31 2020 21:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46884 * 2 1 4 4 O 1.42899 * 109.46869 * 184.99890 * 3 2 1 5 5 N 1.46503 * 109.47161 * 240.00502 * 2 1 3 6 6 C 1.34778 * 120.00167 * 59.99341 * 5 2 1 7 7 O 1.21588 * 119.99647 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99846 * 179.97438 * 6 5 2 9 9 C 1.46498 * 119.99715 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47067 * 180.02562 * 9 8 6 11 11 C 1.38304 * 119.93117 * 269.73014 * 10 9 8 12 12 C 1.38110 * 120.06712 * 179.72380 * 11 10 9 13 13 C 1.38875 * 119.92740 * 0.56863 * 12 11 10 14 14 O 1.35751 * 120.06700 * 179.68206 * 13 12 11 15 15 C 1.34837 * 116.99961 * 174.48904 * 14 13 12 16 16 H 1.07999 * 119.99781 * 5.05527 * 15 14 13 17 17 C 1.38658 * 119.99814 * 185.05667 * 15 14 13 18 18 N 1.31551 * 119.99886 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99873 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47200 * 89.99843 * 19 17 15 21 21 H 1.48499 * 109.47000 * 210.00182 * 19 17 15 22 22 H 1.48498 * 109.47055 * 329.99929 * 19 17 15 23 23 C 1.38882 * 119.86478 * 359.70470 * 13 12 11 24 24 C 1.38099 * 119.92952 * 359.97438 * 23 13 12 25 25 C 1.52999 * 109.46965 * 120.00302 * 2 1 3 26 26 C 1.52992 * 117.52092 * 346.28332 * 25 2 1 27 27 C 1.52997 * 117.49961 * 54.91583 * 25 2 1 28 28 H 1.08999 * 109.47133 * 300.00002 * 1 2 3 29 29 H 1.08997 * 109.47305 * 59.99887 * 1 2 3 30 30 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47458 * 305.00357 * 3 2 1 32 32 H 1.09007 * 109.46861 * 65.00296 * 3 2 1 33 33 H 0.96700 * 113.99732 * 180.02562 * 4 3 2 34 34 H 0.97001 * 119.99492 * 240.00013 * 5 2 1 35 35 H 0.96995 * 120.00513 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.47392 * 300.00154 * 9 8 6 37 37 H 1.09003 * 109.47005 * 60.00646 * 9 8 6 38 38 H 1.07994 * 119.96524 * 359.97438 * 11 10 9 39 39 H 1.07996 * 120.03239 * 180.27418 * 12 11 10 40 40 H 0.97007 * 120.00049 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.03595 * 179.97438 * 23 13 12 42 42 H 1.08004 * 119.95866 * 179.97438 * 24 23 13 43 43 H 1.09000 * 115.54589 * 200.58380 * 25 2 1 44 44 H 1.09000 * 117.50285 * 214.97710 * 26 25 2 45 45 H 1.09006 * 117.50145 * 359.97438 * 26 25 2 46 46 H 1.09000 * 117.49996 * 359.97358 * 27 25 2 47 47 H 1.09003 * 117.49883 * 144.97199 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4641 1.4442 -0.1174 5 7 2.0184 -0.6905 -1.1963 6 6 1.6927 -0.2301 -2.4203 7 8 0.9939 0.7587 -2.5318 8 7 2.1424 -0.8650 -3.5208 9 6 1.7888 -0.3642 -4.8513 10 6 2.4125 -1.2462 -5.9021 11 6 3.6746 -0.9551 -6.3870 12 6 4.2511 -1.7648 -7.3459 13 6 3.5573 -2.8653 -7.8317 14 8 4.1187 -3.6594 -8.7789 15 6 3.4416 -4.7733 -9.1237 16 1 2.4602 -4.9577 -8.7123 17 6 4.0054 -5.6819 -10.0064 18 7 5.2011 -5.4574 -10.5070 19 14 3.0678 -7.2255 -10.4834 20 1 2.2395 -6.9501 -11.6848 21 1 4.0299 -8.3158 -10.7848 22 1 2.1886 -7.6377 -9.3599 23 6 2.2878 -3.1517 -7.3468 24 6 1.7194 -2.3420 -6.3832 25 6 2.0400 -0.7213 1.2492 26 6 1.0329 -0.9957 2.3677 27 6 1.5400 -2.1461 1.4958 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 1.9816 -0.8417 32 1 1.7516 1.9298 0.9315 33 1 3.8571 2.3277 -0.1237 34 1 2.5760 -1.4792 -1.1072 35 1 2.7001 -1.6536 -3.4319 36 1 0.7050 -0.3729 -4.9667 37 1 2.1583 0.6549 -4.9659 38 1 4.2114 -0.0961 -6.0126 39 1 5.2385 -1.5395 -7.7210 40 1 5.5954 -6.0929 -11.1248 41 1 1.7455 -4.0066 -7.7230 42 1 0.7320 -2.5640 -6.0061 43 1 3.0646 -0.4900 1.5401 44 1 1.3949 -0.9449 3.3946 45 1 0.0066 -0.6619 2.2141 46 1 0.8474 -2.5695 0.7684 47 1 2.2359 -2.8523 1.9487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762281628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:49 Heat of formation + Delta-G solvation = -52.522771 kcal Electronic energy + Delta-G solvation = -28142.255297 eV Core-core repulsion = 24098.949916 eV Total energy + Delta-G solvation = -4043.305381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.59548 -39.20464 -38.48761 -36.84612 -36.47192 -34.39071 -34.03556 -32.37359 -31.03754 -30.25367 -29.32946 -26.62041 -25.84547 -24.75140 -23.72559 -22.67457 -22.03616 -20.88039 -20.58452 -19.40780 -18.42990 -18.05070 -17.49339 -17.07761 -16.52997 -16.00594 -15.41478 -15.25796 -14.82813 -14.66041 -14.49989 -14.28954 -13.95039 -13.75484 -13.69529 -13.35331 -13.27232 -12.84508 -12.77087 -12.67238 -12.31288 -12.12242 -11.88804 -11.66230 -11.53547 -11.39376 -11.36052 -10.94569 -10.77924 -10.73778 -10.66614 -10.51950 -10.48614 -10.26524 -9.69802 -9.41532 -9.16423 -8.90550 -8.68277 -8.26651 -7.31515 -6.52313 -4.11197 2.04925 2.14718 2.78742 3.08910 3.09684 3.14486 3.32752 3.53373 3.90868 4.02559 4.19689 4.28773 4.50680 4.59093 4.68766 4.76066 5.02788 5.09199 5.17442 5.21013 5.22392 5.27685 5.30569 5.47172 5.50042 5.51593 5.56731 5.68285 5.70534 5.77372 5.84566 5.89446 5.96772 6.12000 6.13918 6.37218 6.53498 6.61384 6.69308 6.82206 6.94835 7.05784 7.18433 7.29717 7.36401 7.44862 7.73200 7.92451 8.15571 8.73106 8.93058 9.61591 10.65243 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.002051 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.481387 B =13647.172597 C =14252.735122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.233 3.767 3 C 0.066 3.934 4 O -0.567 6.567 5 N -0.731 5.731 6 C 0.708 3.292 7 O -0.600 6.600 8 N -0.738 5.738 9 C 0.199 3.801 10 C -0.213 4.213 11 C -0.053 4.053 12 C -0.196 4.196 13 C 0.160 3.840 14 O -0.174 6.174 15 C -0.393 4.393 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.237 4.237 24 C -0.050 4.050 25 C -0.158 4.158 26 C -0.174 4.174 27 C -0.176 4.176 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.376 0.624 34 H 0.396 0.604 35 H 0.396 0.604 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 9.137 22.905 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.146 3.854 3 C -0.013 4.013 4 O -0.371 6.371 5 N -0.386 5.386 6 C 0.408 3.592 7 O -0.480 6.480 8 N -0.393 5.393 9 C 0.077 3.923 10 C -0.214 4.214 11 C -0.072 4.072 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.077 6.077 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.257 4.257 24 C -0.069 4.069 25 C -0.176 4.176 26 C -0.212 4.212 27 C -0.213 4.213 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.222 0.778 34 H 0.230 0.770 35 H 0.230 0.770 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.145 0.855 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.121 0.879 46 H 0.115 0.885 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.321 9.297 22.455 25.382 hybrid contribution 0.192 -0.988 -0.158 1.019 sum -7.129 8.309 22.297 24.840 Atomic orbital electron populations 1.22346 0.93798 1.02836 1.03779 1.19509 0.93253 0.90097 0.82546 1.22636 0.81486 0.96576 1.00615 1.86445 1.20049 1.33392 1.97263 1.45058 1.56750 1.33113 1.03650 1.15956 0.80132 0.82807 0.80307 1.90811 1.43468 1.27689 1.86016 1.45502 1.55993 1.32857 1.04941 1.19791 0.98640 0.95824 0.78088 1.19239 0.97320 1.00746 1.04143 1.20543 0.93906 0.97557 0.95213 1.20221 1.01175 0.97455 1.02648 1.19439 0.91310 0.90882 0.87806 1.83981 1.45586 1.31778 1.46307 1.21352 1.01304 0.96610 1.27654 0.88943 1.25317 0.96169 0.98915 0.96098 1.70037 1.14443 1.36209 1.28708 0.85695 0.78744 0.79668 0.79240 1.19806 1.20196 1.19154 1.21158 0.97197 1.03919 1.03387 1.20642 0.98041 0.93207 0.95032 1.22466 0.99971 0.98810 0.96390 1.23133 0.99505 1.02941 0.95583 1.22977 1.03905 0.91087 1.03327 0.91600 0.89584 0.91962 0.90982 0.93576 0.77802 0.77006 0.76980 0.91914 0.91876 0.86964 0.86405 0.91898 0.85459 0.87431 0.86711 0.88661 0.87923 0.88461 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 7.06 37.16 0.26 -1.31 16 2 C 0.23 2.22 0.66 -131.82 -0.09 2.13 16 3 C 0.07 0.65 5.64 37.16 0.21 0.86 16 4 O -0.57 -5.70 12.95 -35.23 -0.46 -6.15 16 5 N -0.73 -7.81 4.83 -52.41 -0.25 -8.06 16 6 C 0.71 9.58 7.98 -86.92 -0.69 8.88 16 7 O -0.60 -9.72 12.60 5.29 0.07 -9.66 16 8 N -0.74 -9.61 5.55 -66.42 -0.37 -9.98 16 9 C 0.20 2.86 5.80 -5.20 -0.03 2.83 16 10 C -0.21 -3.45 5.25 -104.58 -0.55 -4.00 16 11 C -0.05 -0.91 9.69 -39.60 -0.38 -1.29 16 12 C -0.20 -3.97 9.99 -39.39 -0.39 -4.37 16 13 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 14 O -0.17 -4.84 9.76 0.03 0.00 -4.84 16 15 C -0.39 -10.72 9.49 30.89 0.29 -10.42 16 16 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 19 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.24 -4.94 9.17 -39.39 -0.36 -5.30 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 25 C -0.16 -1.23 5.00 -90.63 -0.45 -1.69 16 26 C -0.17 -1.10 9.65 -26.74 -0.26 -1.36 16 27 C -0.18 -1.20 9.81 -26.73 -0.26 -1.46 16 28 H 0.07 0.49 6.74 -51.93 -0.35 0.14 16 29 H 0.09 1.03 6.16 -51.93 -0.32 0.71 16 30 H 0.06 0.55 6.96 -51.93 -0.36 0.19 16 31 H 0.07 0.88 6.32 -51.93 -0.33 0.55 16 32 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.38 2.35 9.12 45.56 0.42 2.77 16 34 H 0.40 3.69 8.46 -40.82 -0.35 3.34 16 35 H 0.40 4.70 8.48 -40.82 -0.35 4.35 16 36 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 0.98 7.81 -51.93 -0.41 0.58 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.61 5.89 -51.93 -0.31 0.31 16 46 H 0.10 0.70 7.28 -51.93 -0.38 0.32 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -32.08 384.41 -8.74 -40.82 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -5.81 Total: 14.31 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.45 Total: -13.31 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.14 Total: -42.02 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.39 Total: -20.65 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.08 -8.74 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762281628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.702 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds