Wall clock time and date at job start Tue Mar 31 2020 21:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46884 * 2 1 4 4 O 1.42899 * 109.46869 * 184.99890 * 3 2 1 5 5 N 1.46503 * 109.47161 * 240.00502 * 2 1 3 6 6 C 1.34778 * 120.00167 * 59.99341 * 5 2 1 7 7 O 1.21588 * 119.99647 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99846 * 179.97438 * 6 5 2 9 9 C 1.46498 * 119.99715 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47067 * 180.02562 * 9 8 6 11 11 C 1.38304 * 119.93117 * 269.73014 * 10 9 8 12 12 C 1.38110 * 120.06712 * 179.72380 * 11 10 9 13 13 C 1.38875 * 119.92740 * 0.56863 * 12 11 10 14 14 O 1.35751 * 120.06700 * 179.68206 * 13 12 11 15 15 C 1.34837 * 116.99961 * 174.48904 * 14 13 12 16 16 H 1.07999 * 119.99781 * 5.05527 * 15 14 13 17 17 C 1.38658 * 119.99814 * 185.05667 * 15 14 13 18 18 N 1.31551 * 119.99886 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99873 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47200 * 89.99843 * 19 17 15 21 21 H 1.48499 * 109.47000 * 210.00182 * 19 17 15 22 22 H 1.48498 * 109.47055 * 329.99929 * 19 17 15 23 23 C 1.38882 * 119.86478 * 359.70470 * 13 12 11 24 24 C 1.38099 * 119.92952 * 359.97438 * 23 13 12 25 25 C 1.52999 * 109.46965 * 120.00302 * 2 1 3 26 26 C 1.52992 * 117.52092 * 346.28332 * 25 2 1 27 27 C 1.52997 * 117.49961 * 54.91583 * 25 2 1 28 28 H 1.08999 * 109.47133 * 300.00002 * 1 2 3 29 29 H 1.08997 * 109.47305 * 59.99887 * 1 2 3 30 30 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47458 * 305.00357 * 3 2 1 32 32 H 1.09007 * 109.46861 * 65.00296 * 3 2 1 33 33 H 0.96700 * 113.99732 * 180.02562 * 4 3 2 34 34 H 0.97001 * 119.99492 * 240.00013 * 5 2 1 35 35 H 0.96995 * 120.00513 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.47392 * 300.00154 * 9 8 6 37 37 H 1.09003 * 109.47005 * 60.00646 * 9 8 6 38 38 H 1.07994 * 119.96524 * 359.97438 * 11 10 9 39 39 H 1.07996 * 120.03239 * 180.27418 * 12 11 10 40 40 H 0.97007 * 120.00049 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.03595 * 179.97438 * 23 13 12 42 42 H 1.08004 * 119.95866 * 179.97438 * 24 23 13 43 43 H 1.09000 * 115.54589 * 200.58380 * 25 2 1 44 44 H 1.09000 * 117.50285 * 214.97710 * 26 25 2 45 45 H 1.09006 * 117.50145 * 359.97438 * 26 25 2 46 46 H 1.09000 * 117.49996 * 359.97358 * 27 25 2 47 47 H 1.09003 * 117.49883 * 144.97199 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4641 1.4442 -0.1174 5 7 2.0184 -0.6905 -1.1963 6 6 1.6927 -0.2301 -2.4203 7 8 0.9939 0.7587 -2.5318 8 7 2.1424 -0.8650 -3.5208 9 6 1.7888 -0.3642 -4.8513 10 6 2.4125 -1.2462 -5.9021 11 6 3.6746 -0.9551 -6.3870 12 6 4.2511 -1.7648 -7.3459 13 6 3.5573 -2.8653 -7.8317 14 8 4.1187 -3.6594 -8.7789 15 6 3.4416 -4.7733 -9.1237 16 1 2.4602 -4.9577 -8.7123 17 6 4.0054 -5.6819 -10.0064 18 7 5.2011 -5.4574 -10.5070 19 14 3.0678 -7.2255 -10.4834 20 1 2.2395 -6.9501 -11.6848 21 1 4.0299 -8.3158 -10.7848 22 1 2.1886 -7.6377 -9.3599 23 6 2.2878 -3.1517 -7.3468 24 6 1.7194 -2.3420 -6.3832 25 6 2.0400 -0.7213 1.2492 26 6 1.0329 -0.9957 2.3677 27 6 1.5400 -2.1461 1.4958 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 1.9816 -0.8417 32 1 1.7516 1.9298 0.9315 33 1 3.8571 2.3277 -0.1237 34 1 2.5760 -1.4792 -1.1072 35 1 2.7001 -1.6536 -3.4319 36 1 0.7050 -0.3729 -4.9667 37 1 2.1583 0.6549 -4.9659 38 1 4.2114 -0.0961 -6.0126 39 1 5.2385 -1.5395 -7.7210 40 1 5.5954 -6.0929 -11.1248 41 1 1.7455 -4.0066 -7.7230 42 1 0.7320 -2.5640 -6.0061 43 1 3.0646 -0.4900 1.5401 44 1 1.3949 -0.9449 3.3946 45 1 0.0066 -0.6619 2.2141 46 1 0.8474 -2.5695 0.7684 47 1 2.2359 -2.8523 1.9487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762281628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:48 Heat of formation + Delta-G solvation = -76.296937 kcal Electronic energy + Delta-G solvation = -28143.286222 eV Core-core repulsion = 24098.949916 eV Total energy + Delta-G solvation = -4044.336307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.51800 -40.80926 -39.44321 -38.41699 -37.19209 -35.58904 -34.94270 -34.27102 -32.09639 -31.80939 -30.59603 -27.66518 -27.32530 -26.17730 -24.52375 -23.64207 -23.18716 -22.20916 -21.76169 -20.20907 -19.87882 -19.39965 -18.81631 -18.23920 -17.43573 -16.78082 -16.63747 -16.36119 -16.14646 -16.09691 -15.91881 -15.53371 -15.35935 -15.02297 -14.85330 -14.59563 -14.37060 -14.19822 -14.00665 -13.67440 -13.46127 -13.27087 -13.03946 -13.01886 -12.64990 -12.52796 -12.35583 -12.21160 -12.11738 -12.11240 -12.04221 -11.37883 -11.20138 -11.16081 -11.03689 -10.81552 -10.61448 -10.18938 -9.81564 -9.66756 -9.01295 -8.48197 -6.16433 0.53653 0.57978 1.35886 1.44050 1.53036 1.82707 2.17254 2.28121 2.77233 2.93945 3.15538 3.35531 3.47963 3.48820 3.60096 3.87873 3.90428 4.04186 4.12552 4.16454 4.17803 4.41344 4.48297 4.52562 4.54341 4.57317 4.72380 4.76616 4.78848 4.81870 4.88930 4.95920 5.02958 5.04835 5.14659 5.23046 5.27073 5.29755 5.40472 5.52238 5.60006 5.69103 5.69578 5.76521 6.01524 6.10242 6.17009 6.86492 6.96552 7.18478 7.70218 7.75924 8.74615 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.002051 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.481387 B =13647.172597 C =14252.735122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.227 3.773 3 C 0.068 3.932 4 O -0.581 6.581 5 N -0.721 5.721 6 C 0.705 3.295 7 O -0.626 6.626 8 N -0.735 5.735 9 C 0.207 3.793 10 C -0.181 4.181 11 C -0.043 4.043 12 C -0.205 4.205 13 C 0.122 3.878 14 O -0.229 6.229 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.243 4.243 24 C -0.045 4.045 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.174 4.174 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.390 0.610 34 H 0.404 0.596 35 H 0.404 0.596 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 9.528 25.886 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.141 3.859 3 C -0.011 4.011 4 O -0.388 6.388 5 N -0.375 5.375 6 C 0.405 3.595 7 O -0.508 6.508 8 N -0.390 5.390 9 C 0.083 3.917 10 C -0.182 4.182 11 C -0.062 4.062 12 C -0.224 4.224 13 C 0.071 3.929 14 O -0.135 6.135 15 C -0.489 4.489 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.838 3.162 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.176 1.176 23 C -0.262 4.262 24 C -0.063 4.063 25 C -0.182 4.182 26 C -0.201 4.201 27 C -0.211 4.211 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.239 0.761 34 H 0.239 0.761 35 H 0.239 0.761 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.163 0.837 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.156 0.844 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.094 9.722 25.505 28.770 hybrid contribution 0.664 -0.792 -0.782 1.296 sum -8.430 8.931 24.722 27.605 Atomic orbital electron populations 1.22281 0.93602 1.02905 1.03361 1.19676 0.93428 0.90154 0.82686 1.22576 0.81363 0.96664 1.00449 1.86402 1.20099 1.34988 1.97276 1.45046 1.56199 1.33114 1.03185 1.16055 0.79949 0.82515 0.80956 1.90811 1.44655 1.28900 1.86469 1.45281 1.56207 1.33125 1.04394 1.19661 0.98692 0.95326 0.77981 1.19510 0.96334 0.99469 1.02862 1.20869 0.94188 0.97554 0.93575 1.20444 1.01329 0.97251 1.03384 1.19984 0.92805 0.91619 0.88446 1.83951 1.47292 1.33116 1.49158 1.21833 1.01923 0.97086 1.28093 0.87906 1.26592 0.97179 1.02403 0.95852 1.70181 1.16787 1.38053 1.30656 0.84588 0.77425 0.74907 0.79324 1.18892 1.19670 1.17558 1.21243 0.96419 1.04430 1.04154 1.20931 0.99209 0.92544 0.93623 1.22301 1.00055 0.99578 0.96217 1.23230 0.99308 1.01794 0.95733 1.23016 1.03887 0.90841 1.03394 0.89642 0.92339 0.91588 0.93592 0.91630 0.76091 0.76130 0.76129 0.91471 0.91495 0.83736 0.86720 0.91807 0.86146 0.84350 0.87308 0.87412 0.87404 0.88811 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 7.06 71.98 0.51 -2.22 16 2 C 0.23 3.87 0.66 3.60 0.00 3.87 16 3 C 0.07 1.24 5.64 71.98 0.41 1.65 16 4 O -0.58 -10.63 12.95 -148.98 -1.93 -12.56 16 5 N -0.72 -13.94 4.83 -438.00 -2.12 -16.06 16 6 C 0.70 17.61 7.98 179.06 1.43 19.04 16 7 O -0.63 -19.37 12.60 -3.99 -0.05 -19.42 16 8 N -0.73 -17.03 5.55 -482.31 -2.68 -19.71 16 9 C 0.21 5.25 5.80 85.63 0.50 5.75 16 10 C -0.18 -5.32 5.25 -19.83 -0.10 -5.43 16 11 C -0.04 -1.38 9.69 22.26 0.22 -1.17 16 12 C -0.20 -8.35 9.99 22.39 0.22 -8.13 16 13 C 0.12 5.88 6.65 22.58 0.15 6.03 16 14 O -0.23 -13.48 9.76 -22.82 -0.22 -13.70 16 15 C -0.41 -23.55 9.49 67.92 0.64 -22.90 16 16 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 17 C -0.02 -1.26 5.49 84.84 0.47 -0.79 16 18 N -0.92 -55.68 13.67 21.61 0.30 -55.38 16 19 Si 1.02 42.06 29.55 68.60 2.03 44.09 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.24 -10.09 9.17 22.39 0.21 -9.89 16 24 C -0.04 -1.45 9.69 22.25 0.22 -1.23 16 25 C -0.16 -2.14 5.00 -10.80 -0.05 -2.19 16 26 C -0.16 -1.57 9.65 30.59 0.30 -1.27 16 27 C -0.17 -1.92 9.81 30.59 0.30 -1.62 16 28 H 0.08 1.05 6.74 -2.39 -0.02 1.04 16 29 H 0.06 1.34 6.16 -2.39 -0.01 1.32 16 30 H 0.07 1.03 6.96 -2.39 -0.02 1.01 16 31 H 0.05 1.08 6.32 -2.39 -0.02 1.07 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.39 4.25 9.12 -74.06 -0.68 3.57 16 34 H 0.40 6.58 8.46 -92.71 -0.78 5.80 16 35 H 0.40 8.34 8.48 -92.71 -0.79 7.55 16 36 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 37 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 38 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 41 H 0.12 5.10 5.64 -2.91 -0.02 5.09 16 42 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.11 1.61 7.81 -2.39 -0.02 1.59 16 44 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.11 0.94 5.89 -2.38 -0.01 0.92 16 46 H 0.09 1.11 7.28 -2.39 -0.02 1.10 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -73.67 384.41 -0.48 -74.15 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -1.21 Total: 39.08 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 5.40 Total: -20.49 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -4.50 Total: -91.15 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -2.20 Total: -45.68 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -73.67 -0.48 -74.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762281628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.146 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds