Wall clock time and date at job start Tue Mar 31 2020 18:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47004 * 2 1 4 4 C 1.50697 * 109.47162 * 240.00532 * 2 1 3 5 5 H 1.08005 * 120.00297 * 240.00437 * 4 2 1 6 6 C 1.37881 * 120.00138 * 59.99669 * 4 2 1 7 7 N 1.31513 * 119.99929 * 180.02562 * 6 4 2 8 8 Si 1.86791 * 119.99915 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47431 * 270.00149 * 8 6 4 10 10 H 1.48503 * 109.47415 * 29.99967 * 8 6 4 11 11 H 1.48500 * 109.47403 * 149.99884 * 8 6 4 12 12 N 1.46897 * 109.47305 * 120.00643 * 2 1 3 13 13 C 1.46903 * 110.99940 * 205.90763 * 12 2 1 14 14 H 1.09001 * 109.47301 * 324.00788 * 13 12 2 15 15 C 1.52995 * 109.47505 * 84.00986 * 13 12 2 16 16 C 1.50699 * 109.47057 * 204.01040 * 13 12 2 17 17 O 1.21281 * 120.00298 * 359.97438 * 16 13 12 18 18 N 1.34773 * 120.00276 * 179.97438 * 16 13 12 19 19 C 1.46498 * 120.00119 * 179.97438 * 18 16 13 20 20 C 1.53003 * 109.47003 * 180.02562 * 19 18 16 21 21 H 1.08992 * 109.70853 * 304.41972 * 20 19 18 22 22 C 1.53468 * 109.71182 * 183.78257 * 20 19 18 23 23 O 1.43158 * 108.25799 * 180.59376 * 22 20 19 24 24 C 1.36114 * 116.70677 * 46.20044 * 23 22 20 25 25 C 1.38705 * 119.39061 * 162.99250 * 24 23 22 26 26 C 1.38205 * 120.06230 * 179.66810 * 25 24 23 27 27 C 1.38255 * 120.11086 * 0.02562 * 26 25 24 28 28 C 1.38193 * 120.11278 * 0.03284 * 27 26 25 29 29 C 1.38699 * 120.06853 * 0.02562 * 28 27 26 30 30 O 1.36113 * 119.39644 * 179.86805 * 29 28 27 31 31 H 1.09001 * 109.47299 * 54.04008 * 1 2 3 32 32 H 1.09001 * 109.47224 * 174.04458 * 1 2 3 33 33 H 1.09003 * 109.47096 * 294.04352 * 1 2 3 34 34 H 0.97004 * 119.99760 * 180.02562 * 7 6 4 35 35 H 1.00890 * 111.00265 * 81.94976 * 12 2 1 36 36 H 1.09005 * 109.47141 * 55.32672 * 15 13 12 37 37 H 1.09006 * 109.47309 * 175.32422 * 15 13 12 38 38 H 1.08997 * 109.47452 * 295.33148 * 15 13 12 39 39 H 0.97004 * 120.00168 * 0.02562 * 18 16 13 40 40 H 1.08995 * 109.47647 * 300.00024 * 19 18 16 41 41 H 1.09000 * 109.47268 * 60.00601 * 19 18 16 42 42 H 1.09001 * 109.71356 * 300.27755 * 22 20 19 43 43 H 1.09006 * 109.70274 * 60.89536 * 22 20 19 44 44 H 1.07998 * 119.97401 * 359.66159 * 25 24 23 45 45 H 1.07994 * 119.94205 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.93982 * 180.02562 * 27 26 25 47 47 H 1.08009 * 119.96296 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 2.1372 -0.8593 -3.5566 8 14 0.6258 1.2799 -2.6540 9 1 -0.8021 0.8746 -2.6992 10 1 0.8491 2.1774 -1.4921 11 1 0.9771 1.9956 -3.9069 12 7 2.0197 -0.6926 1.1993 13 6 3.3583 -0.2162 1.5727 14 1 3.9320 -0.0014 0.6711 15 6 3.2310 1.0568 2.4116 16 6 4.0636 -1.2786 2.3757 17 8 3.5060 -2.3289 2.6141 18 7 5.3141 -1.0616 2.8291 19 6 5.9995 -2.0941 3.6103 20 6 7.3937 -1.5980 3.9991 21 1 7.9436 -1.3083 3.1038 22 6 8.1520 -2.7102 4.7361 23 8 9.4437 -2.2094 5.0968 24 6 9.4843 -0.9706 5.6593 25 6 10.6210 -0.5722 6.3471 26 6 10.6799 0.6851 6.9177 27 6 9.6062 1.5488 6.8052 28 6 8.4703 1.1576 6.1223 29 6 8.4042 -0.1033 5.5483 30 8 7.2777 -0.4755 4.8811 31 1 -0.3634 0.6035 -0.8318 32 1 -0.3634 -1.0221 -0.1066 33 1 -0.3633 0.4187 0.9385 34 1 1.9031 -0.5277 -4.4376 35 1 2.0159 -1.6927 1.0662 36 1 2.5883 0.8633 3.2705 37 1 4.2179 1.3638 2.7581 38 1 2.7961 1.8504 1.8040 39 1 5.7600 -0.2214 2.6389 40 1 5.4260 -2.3082 4.5121 41 1 6.0899 -3.0015 3.0131 42 1 7.6046 -2.9954 5.6345 43 1 8.2625 -3.5754 4.0822 44 1 11.4609 -1.2452 6.4369 45 1 11.5657 0.9931 7.4532 46 1 9.6554 2.5309 7.2518 47 1 7.6331 1.8344 6.0355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:06 Heat of formation + Delta-G solvation = -74.838079 kcal Electronic energy + Delta-G solvation = -28531.972551 eV Core-core repulsion = 24487.699505 eV Total energy + Delta-G solvation = -4044.273046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67873 -39.68503 -38.16156 -37.64722 -36.16301 -34.92422 -32.98278 -31.93896 -31.04181 -30.86881 -29.18121 -27.71311 -26.52369 -24.94122 -24.20257 -23.17629 -22.73654 -21.18509 -20.18052 -19.57760 -19.14954 -17.93032 -17.57849 -17.05759 -16.48728 -16.18734 -15.56296 -15.41797 -15.40628 -14.94438 -14.90735 -14.71959 -14.35091 -14.20377 -14.03030 -13.84712 -13.13380 -13.07354 -12.82978 -12.59234 -12.27322 -12.17724 -12.10993 -12.03240 -11.93242 -11.56711 -11.40741 -11.36593 -11.15678 -10.85268 -10.77466 -10.67691 -10.00962 -9.60418 -9.40198 -9.24265 -9.10226 -9.01611 -8.62080 -8.43739 -7.45187 -6.14334 -4.15779 0.93270 0.94740 2.55200 2.76826 2.91217 3.09451 3.25396 3.34035 3.36315 3.36669 3.87613 4.19057 4.25872 4.35049 4.35312 4.63385 4.72676 4.88069 4.95362 4.98422 5.04032 5.05952 5.09397 5.20969 5.24781 5.46702 5.52607 5.58992 5.78391 5.79604 5.81380 5.97184 6.10825 6.26227 6.26546 6.35479 6.41309 6.52399 6.54440 6.57943 6.74321 6.97216 7.04198 7.25311 7.50545 7.55116 7.98623 8.35831 8.41576 8.48631 8.88256 9.48710 10.98684 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.002226 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.483319 B =12577.074462 C =12911.238451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.176 3.824 3 H 0.033 0.967 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.893 3.107 9 H -0.278 1.278 10 H -0.266 1.266 11 H -0.298 1.298 12 N -0.666 5.666 13 C 0.071 3.929 14 H 0.078 0.922 15 C -0.133 4.133 16 C 0.521 3.479 17 O -0.531 6.531 18 N -0.732 5.732 19 C 0.133 3.867 20 C 0.040 3.960 21 H 0.095 0.905 22 C 0.030 3.970 23 O -0.305 6.305 24 C 0.047 3.953 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.113 4.113 29 C 0.054 3.946 30 O -0.299 6.299 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.350 0.650 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.404 0.596 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.376 3.122 20.951 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.067 3.933 3 H 0.051 0.949 4 C -0.587 4.587 5 H 0.090 0.910 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.191 1.191 11 H -0.226 1.226 12 N -0.300 5.300 13 C -0.043 4.043 14 H 0.096 0.904 15 C -0.191 4.191 16 C 0.308 3.692 17 O -0.406 6.406 18 N -0.387 5.387 19 C 0.008 3.992 20 C -0.017 4.017 21 H 0.113 0.887 22 C -0.046 4.046 23 O -0.219 6.219 24 C 0.002 3.998 25 C -0.133 4.133 26 C -0.136 4.136 27 C -0.134 4.134 28 C -0.132 4.132 29 C 0.009 3.991 30 O -0.214 6.214 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.171 0.829 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.239 0.761 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 16.592 2.692 21.325 27.153 hybrid contribution 0.136 0.573 -1.258 1.389 sum 16.728 3.265 20.066 26.328 Atomic orbital electron populations 1.22014 0.98317 1.00852 0.98334 1.19633 0.91820 0.94729 0.87114 0.94869 1.21749 1.32892 1.14017 0.90007 0.90997 1.25010 0.95469 0.96746 0.95803 1.69923 1.45329 1.40249 0.97996 0.86774 0.80724 0.83436 0.76727 1.20472 1.19129 1.22625 1.60809 1.19284 1.11542 1.38351 1.21360 0.92648 0.93063 0.97189 0.90417 1.21750 1.00936 0.96249 1.00154 1.21051 0.80464 0.88771 0.78922 1.90665 1.65448 1.27308 1.57224 1.45862 1.16610 1.19830 1.56363 1.21202 0.89068 0.91916 0.96983 1.23458 0.98644 0.86822 0.92785 0.88745 1.23586 0.83243 0.96650 1.01097 1.86330 1.29905 1.29418 1.76241 1.18967 0.96071 0.85210 0.99528 1.20459 0.96998 0.97600 0.98275 1.20933 0.99182 0.93151 1.00383 1.20948 0.92715 1.00169 0.99603 1.20509 0.99584 0.93119 0.99967 1.18958 0.87263 0.94303 0.98577 1.86393 1.30763 1.48025 1.56194 0.94517 0.92926 0.94352 0.92621 0.82930 0.91894 0.93020 0.91562 0.76134 0.90154 0.88946 0.89920 0.85438 0.84854 0.85094 0.85033 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.92 37.16 0.33 -2.73 16 2 C 0.18 4.13 1.99 -68.87 -0.14 3.99 16 3 H 0.03 0.79 6.14 -51.93 -0.32 0.47 16 4 C -0.55 -15.13 8.88 -34.44 -0.31 -15.43 16 5 H 0.07 2.18 7.97 -52.48 -0.42 1.76 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 8 Si 0.89 21.79 24.31 -169.99 -4.13 17.66 16 9 H -0.28 -6.67 6.92 56.52 0.39 -6.28 16 10 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 11 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 12 N -0.67 -14.08 5.92 -102.18 -0.61 -14.68 16 13 C 0.07 1.27 2.84 -68.87 -0.20 1.07 16 14 H 0.08 1.48 7.68 -51.93 -0.40 1.08 16 15 C -0.13 -1.95 9.30 37.16 0.35 -1.61 16 16 C 0.52 8.73 7.18 -10.99 -0.08 8.65 16 17 O -0.53 -10.65 15.67 5.56 0.09 -10.56 16 18 N -0.73 -9.13 5.37 -60.30 -0.32 -9.45 16 19 C 0.13 1.36 5.37 -4.04 -0.02 1.34 16 20 C 0.04 0.35 3.06 -26.49 -0.08 0.27 16 21 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 22 C 0.03 0.23 6.56 37.40 0.25 0.48 16 23 O -0.30 -3.03 10.42 -32.89 -0.34 -3.37 16 24 C 0.05 0.48 6.49 -39.14 -0.25 0.22 16 25 C -0.11 -0.96 9.96 -39.42 -0.39 -1.36 16 26 C -0.12 -0.82 10.04 -39.59 -0.40 -1.22 16 27 C -0.12 -0.83 10.04 -39.59 -0.40 -1.23 16 28 C -0.11 -1.00 9.96 -39.43 -0.39 -1.40 16 29 C 0.05 0.56 6.49 -39.14 -0.25 0.31 16 30 O -0.30 -3.17 10.03 -32.89 -0.33 -3.50 16 31 H 0.04 0.83 3.45 -51.93 -0.18 0.65 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.35 8.02 7.15 -39.30 -0.28 7.73 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.60 7.44 -51.93 -0.39 0.22 16 38 H 0.07 1.01 7.43 -51.93 -0.39 0.62 16 39 H 0.40 4.31 7.84 -40.82 -0.32 3.99 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 47 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -33.55 379.54 -8.18 -41.73 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.94 Total: 9.55 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.08 Total: -6.67 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.16 Total: -50.55 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.59 Total: -17.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.13 Total: 17.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.55 -8.18 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.109 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds