Wall clock time and date at job start Tue Mar 31 2020 18:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47004 * 2 1 4 4 C 1.50697 * 109.47162 * 240.00532 * 2 1 3 5 5 H 1.08005 * 120.00297 * 240.00437 * 4 2 1 6 6 C 1.37881 * 120.00138 * 59.99669 * 4 2 1 7 7 N 1.31513 * 119.99929 * 180.02562 * 6 4 2 8 8 Si 1.86791 * 119.99915 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47431 * 270.00149 * 8 6 4 10 10 H 1.48503 * 109.47415 * 29.99967 * 8 6 4 11 11 H 1.48500 * 109.47403 * 149.99884 * 8 6 4 12 12 N 1.46897 * 109.47305 * 120.00643 * 2 1 3 13 13 C 1.46903 * 110.99940 * 205.90763 * 12 2 1 14 14 H 1.09001 * 109.47301 * 324.00788 * 13 12 2 15 15 C 1.52995 * 109.47505 * 84.00986 * 13 12 2 16 16 C 1.50699 * 109.47057 * 204.01040 * 13 12 2 17 17 O 1.21281 * 120.00298 * 359.97438 * 16 13 12 18 18 N 1.34773 * 120.00276 * 179.97438 * 16 13 12 19 19 C 1.46498 * 120.00119 * 179.97438 * 18 16 13 20 20 C 1.53003 * 109.47003 * 180.02562 * 19 18 16 21 21 H 1.08992 * 109.70853 * 304.41972 * 20 19 18 22 22 C 1.53468 * 109.71182 * 183.78257 * 20 19 18 23 23 O 1.43158 * 108.25799 * 180.59376 * 22 20 19 24 24 C 1.36114 * 116.70677 * 46.20044 * 23 22 20 25 25 C 1.38705 * 119.39061 * 162.99250 * 24 23 22 26 26 C 1.38205 * 120.06230 * 179.66810 * 25 24 23 27 27 C 1.38255 * 120.11086 * 0.02562 * 26 25 24 28 28 C 1.38193 * 120.11278 * 0.03284 * 27 26 25 29 29 C 1.38699 * 120.06853 * 0.02562 * 28 27 26 30 30 O 1.36113 * 119.39644 * 179.86805 * 29 28 27 31 31 H 1.09001 * 109.47299 * 54.04008 * 1 2 3 32 32 H 1.09001 * 109.47224 * 174.04458 * 1 2 3 33 33 H 1.09003 * 109.47096 * 294.04352 * 1 2 3 34 34 H 0.97004 * 119.99760 * 180.02562 * 7 6 4 35 35 H 1.00890 * 111.00265 * 81.94976 * 12 2 1 36 36 H 1.09005 * 109.47141 * 55.32672 * 15 13 12 37 37 H 1.09006 * 109.47309 * 175.32422 * 15 13 12 38 38 H 1.08997 * 109.47452 * 295.33148 * 15 13 12 39 39 H 0.97004 * 120.00168 * 0.02562 * 18 16 13 40 40 H 1.08995 * 109.47647 * 300.00024 * 19 18 16 41 41 H 1.09000 * 109.47268 * 60.00601 * 19 18 16 42 42 H 1.09001 * 109.71356 * 300.27755 * 22 20 19 43 43 H 1.09006 * 109.70274 * 60.89536 * 22 20 19 44 44 H 1.07998 * 119.97401 * 359.66159 * 25 24 23 45 45 H 1.07994 * 119.94205 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.93982 * 180.02562 * 27 26 25 47 47 H 1.08009 * 119.96296 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 2.1372 -0.8593 -3.5566 8 14 0.6258 1.2799 -2.6540 9 1 -0.8021 0.8746 -2.6992 10 1 0.8491 2.1774 -1.4921 11 1 0.9771 1.9956 -3.9069 12 7 2.0197 -0.6926 1.1993 13 6 3.3583 -0.2162 1.5727 14 1 3.9320 -0.0014 0.6711 15 6 3.2310 1.0568 2.4116 16 6 4.0636 -1.2786 2.3757 17 8 3.5060 -2.3289 2.6141 18 7 5.3141 -1.0616 2.8291 19 6 5.9995 -2.0941 3.6103 20 6 7.3937 -1.5980 3.9991 21 1 7.9436 -1.3083 3.1038 22 6 8.1520 -2.7102 4.7361 23 8 9.4437 -2.2094 5.0968 24 6 9.4843 -0.9706 5.6593 25 6 10.6210 -0.5722 6.3471 26 6 10.6799 0.6851 6.9177 27 6 9.6062 1.5488 6.8052 28 6 8.4703 1.1576 6.1223 29 6 8.4042 -0.1033 5.5483 30 8 7.2777 -0.4755 4.8811 31 1 -0.3634 0.6035 -0.8318 32 1 -0.3634 -1.0221 -0.1066 33 1 -0.3633 0.4187 0.9385 34 1 1.9031 -0.5277 -4.4376 35 1 2.0159 -1.6927 1.0662 36 1 2.5883 0.8633 3.2705 37 1 4.2179 1.3638 2.7581 38 1 2.7961 1.8504 1.8040 39 1 5.7600 -0.2214 2.6389 40 1 5.4260 -2.3082 4.5121 41 1 6.0899 -3.0015 3.0131 42 1 7.6046 -2.9954 5.6345 43 1 8.2625 -3.5754 4.0822 44 1 11.4609 -1.2452 6.4369 45 1 11.5657 0.9931 7.4532 46 1 9.6554 2.5309 7.2518 47 1 7.6331 1.8344 6.0355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:05 Heat of formation + Delta-G solvation = -100.078658 kcal Electronic energy + Delta-G solvation = -28533.067065 eV Core-core repulsion = 24487.699505 eV Total energy + Delta-G solvation = -4045.367559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.35995 -40.99684 -38.84086 -38.35257 -37.80827 -36.04799 -34.81117 -33.24933 -32.31702 -31.60605 -29.91699 -29.20087 -27.36726 -27.03544 -25.13953 -24.08668 -23.59821 -22.02995 -21.76946 -20.92615 -19.85793 -19.20453 -18.58827 -18.30573 -17.77134 -17.27707 -16.86369 -16.64234 -16.26115 -16.15309 -15.73559 -15.63161 -15.42678 -15.22770 -14.92683 -14.81888 -14.73116 -14.54000 -13.99068 -13.87051 -13.76185 -13.49439 -13.32511 -13.08032 -12.82525 -12.77369 -12.72958 -12.50045 -12.43416 -12.17079 -12.06093 -11.90159 -11.53094 -11.43815 -11.28062 -10.83877 -10.72888 -10.24388 -9.64002 -9.21326 -9.09394 -8.33689 -6.40180 0.31405 0.32473 1.33135 1.36148 1.47751 1.55645 1.82385 2.02995 2.16777 2.30479 2.75123 3.02111 3.16459 3.42109 3.47663 3.59925 3.68279 3.79862 4.10975 4.16859 4.21574 4.23710 4.36905 4.37934 4.44085 4.46390 4.56903 4.59639 4.62916 4.69659 4.84726 4.90110 4.93073 4.99756 5.11493 5.18445 5.22863 5.27395 5.32323 5.47486 5.51751 5.53504 5.71769 5.87727 6.03242 6.32069 6.37210 6.39776 6.58150 6.71916 7.13462 7.28635 8.82861 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.002226 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.483319 B =12577.074462 C =12911.238451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.181 3.819 3 H 0.041 0.959 4 C -0.548 4.548 5 H 0.026 0.974 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.241 1.241 11 H -0.299 1.299 12 N -0.663 5.663 13 C 0.065 3.935 14 H 0.063 0.937 15 C -0.124 4.124 16 C 0.522 3.478 17 O -0.570 6.570 18 N -0.715 5.715 19 C 0.134 3.866 20 C 0.047 3.953 21 H 0.098 0.902 22 C 0.029 3.971 23 O -0.317 6.317 24 C 0.025 3.975 25 C -0.125 4.125 26 C -0.114 4.114 27 C -0.114 4.114 28 C -0.126 4.126 29 C 0.031 3.969 30 O -0.314 6.314 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.266 0.734 35 H 0.336 0.664 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.414 0.586 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.160 0.840 46 H 0.159 0.841 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.025 5.387 22.889 29.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.071 3.929 3 H 0.059 0.941 4 C -0.587 4.587 5 H 0.045 0.955 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.164 1.164 11 H -0.227 1.227 12 N -0.295 5.295 13 C -0.049 4.049 14 H 0.081 0.919 15 C -0.182 4.182 16 C 0.309 3.691 17 O -0.448 6.448 18 N -0.368 5.368 19 C 0.010 3.990 20 C -0.009 4.009 21 H 0.116 0.884 22 C -0.046 4.046 23 O -0.232 6.232 24 C -0.019 4.019 25 C -0.143 4.143 26 C -0.132 4.132 27 C -0.132 4.132 28 C -0.145 4.145 29 C -0.014 4.014 30 O -0.229 6.229 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.251 0.749 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.104 0.896 43 H 0.169 0.831 44 H 0.163 0.837 45 H 0.178 0.822 46 H 0.176 0.824 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 17.285 4.988 23.306 29.442 hybrid contribution 0.088 -0.185 -1.788 1.799 sum 17.372 4.803 21.518 28.069 Atomic orbital electron populations 1.21959 0.96997 1.00580 0.99783 1.19543 0.92856 0.94486 0.85969 0.94127 1.22001 1.31881 1.12695 0.92120 0.95525 1.25915 0.96998 1.00205 0.95271 1.70076 1.47379 1.42504 0.98702 0.85751 0.78934 0.79636 0.77448 1.19437 1.16420 1.22684 1.60863 1.21502 1.10471 1.36670 1.21512 0.91091 0.94864 0.97420 0.91911 1.21711 1.02935 0.94192 0.99360 1.20852 0.81501 0.87895 0.78898 1.90648 1.66685 1.28520 1.58974 1.45704 1.15219 1.20715 1.55168 1.21301 0.89623 0.91562 0.96512 1.23369 0.97517 0.87096 0.92966 0.88439 1.23735 0.82584 0.96748 1.01563 1.86305 1.30805 1.29590 1.76458 1.19259 0.96788 0.85406 1.00497 1.20782 0.96881 0.98563 0.98118 1.21329 1.00057 0.92337 0.99466 1.21322 0.91958 1.01293 0.98629 1.20779 1.00586 0.92844 1.00248 1.19221 0.87397 0.95179 0.99606 1.86339 1.31397 1.48573 1.56599 0.94541 0.93895 0.91572 0.92507 0.84519 0.91928 0.89811 0.91672 0.74889 0.90567 0.88229 0.89638 0.83121 0.83712 0.82193 0.82357 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.79 8.92 71.98 0.64 -5.14 16 2 C 0.18 8.37 1.99 44.17 0.09 8.46 16 3 H 0.04 1.84 6.14 -2.39 -0.01 1.82 16 4 C -0.55 -30.98 8.88 25.60 0.23 -30.76 16 5 H 0.03 1.70 7.97 -2.91 -0.02 1.68 16 6 C 0.01 0.82 5.45 84.66 0.46 1.29 16 7 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 8 Si 0.96 44.20 24.31 68.60 1.67 45.87 16 9 H -0.27 -11.96 6.92 99.48 0.69 -11.27 16 10 H -0.24 -10.07 6.53 99.48 0.65 -9.42 16 11 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 12 N -0.66 -28.06 5.92 -477.18 -2.83 -30.88 16 13 C 0.06 2.28 2.84 44.17 0.13 2.41 16 14 H 0.06 2.41 7.68 -2.39 -0.02 2.40 16 15 C -0.12 -3.40 9.30 71.98 0.67 -2.73 16 16 C 0.52 17.49 7.18 87.66 0.63 18.12 16 17 O -0.57 -23.26 15.67 -3.03 -0.05 -23.30 16 18 N -0.71 -17.35 5.37 -463.07 -2.49 -19.84 16 19 C 0.13 2.67 5.37 86.38 0.46 3.14 16 20 C 0.05 0.81 3.06 30.75 0.09 0.90 16 21 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 22 C 0.03 0.43 6.56 72.14 0.47 0.90 16 23 O -0.32 -6.12 10.42 -82.62 -0.86 -6.98 16 24 C 0.03 0.49 6.49 22.56 0.15 0.64 16 25 C -0.12 -1.92 9.96 22.37 0.22 -1.70 16 26 C -0.11 -1.31 10.04 22.27 0.22 -1.08 16 27 C -0.11 -1.37 10.04 22.26 0.22 -1.15 16 28 C -0.13 -2.07 9.96 22.37 0.22 -1.85 16 29 C 0.03 0.62 6.49 22.55 0.15 0.76 16 30 O -0.31 -6.47 10.03 -82.62 -0.83 -7.29 16 31 H 0.04 1.54 3.45 -2.39 -0.01 1.54 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.34 15.87 7.15 -89.70 -0.64 15.23 16 36 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.08 1.73 7.44 -2.38 -0.02 1.71 16 38 H 0.06 1.81 7.43 -2.39 -0.02 1.80 16 39 H 0.41 8.34 7.84 -92.71 -0.73 7.61 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.15 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 45 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 46 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 47 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -74.53 379.54 -0.47 -75.00 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.44 Total: 33.89 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 5.06 Total: -7.79 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -5.01 Total: -109.39 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -1.74 Total: -37.58 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.67 Total: 45.87 kcal Total: -74.53 -0.47 -75.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.079 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds