Wall clock time and date at job start Tue Mar 31 2020 18:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21588 * 119.99923 * 0.02562 * 9 8 5 11 11 C 1.47603 * 120.00404 * 180.02562 * 9 8 5 12 12 C 1.39701 * 120.09755 * 359.73460 * 11 9 8 13 13 C 1.37727 * 119.96607 * 179.76467 * 12 11 9 14 14 C 1.39008 * 120.26942 * 0.57029 * 13 12 11 15 15 C 1.39258 * 120.04395 * 359.62077 * 14 13 12 16 16 C 1.38287 * 119.96285 * 0.11940 * 15 14 13 17 17 O 1.36144 * 120.75906 * 180.26508 * 15 14 13 18 18 C 1.43165 * 116.71204 * 342.86099 * 17 15 14 19 19 C 1.53467 * 108.23819 * 46.13780 * 18 17 15 20 20 O 1.35969 * 119.23885 * 179.53288 * 14 13 12 21 21 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 2 1 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 2 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 2 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 33 33 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 34 34 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 35 35 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 36 36 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 37 37 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 38 38 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 39 39 H 1.07996 * 120.01418 * 0.02562 * 12 11 9 40 40 H 1.07998 * 119.85907 * 180.30134 * 13 12 11 41 41 H 1.08001 * 120.02557 * 179.97438 * 16 15 14 42 42 H 1.09002 * 109.71759 * 165.83065 * 18 17 15 43 43 H 1.09006 * 109.70819 * 286.45454 * 18 17 15 44 44 H 1.09002 * 109.70341 * 59.87659 * 19 18 17 45 45 H 1.08995 * 109.71278 * 180.49878 * 19 18 17 46 46 H 0.97000 * 119.99792 * 264.99726 * 21 2 1 47 47 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9376 0.4322 0.5720 11 6 5.5474 2.6267 1.2672 12 6 4.6548 3.5276 1.8533 13 6 5.0198 4.8445 2.0248 14 6 6.2699 5.2853 1.6062 15 6 7.1627 4.3932 1.0176 16 6 6.8042 3.0685 0.8475 17 8 8.3928 4.8081 0.6072 18 6 8.5783 6.2195 0.4554 19 6 7.9967 6.9163 1.6929 20 8 6.6049 6.5920 1.7771 21 7 2.0183 -0.6907 -1.1962 22 6 2.1491 -0.0075 -2.3757 23 1 1.8926 1.0405 -2.4242 24 6 2.6172 -0.6605 -3.5077 25 7 2.9303 -1.9375 -3.4485 26 14 2.8029 0.2732 -5.1149 27 1 4.1654 0.8587 -5.1927 28 1 2.5981 -0.6569 -6.2543 29 1 1.7929 1.3602 -5.1754 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 5.1715 -1.3617 2.5381 36 1 3.6546 -1.0593 3.4193 37 1 3.8002 -2.4819 2.3595 38 1 3.3284 1.4129 1.9028 39 1 3.6807 3.1905 2.1755 40 1 4.3303 5.5383 2.4825 41 1 7.4957 2.3759 0.3908 42 1 9.6419 6.4439 0.3731 43 1 8.0591 6.5645 -0.4388 44 1 8.5107 6.5654 2.5878 45 1 8.1176 7.9953 1.5981 46 1 2.2490 -1.6318 -1.1526 47 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146305908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:53 Heat of formation + Delta-G solvation = -75.368657 kcal Electronic energy + Delta-G solvation = -29132.216018 eV Core-core repulsion = 25087.919965 eV Total energy + Delta-G solvation = -4044.296053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50229 -39.73786 -37.58410 -37.52544 -36.58622 -34.42796 -32.27880 -31.66659 -30.88203 -30.47645 -28.65287 -28.46323 -26.28008 -25.31172 -23.66515 -23.39410 -22.17709 -21.02563 -20.12600 -19.67672 -19.00042 -17.97951 -17.47647 -17.12026 -16.41910 -15.88655 -15.64353 -15.26299 -14.81046 -14.68980 -14.58543 -14.16571 -14.03399 -13.99376 -13.78528 -13.59656 -13.46355 -12.99083 -12.67380 -12.61784 -12.13436 -12.04837 -11.93114 -11.68953 -11.55812 -11.38943 -11.34225 -10.97792 -10.77292 -10.75097 -10.56709 -10.36900 -10.17384 -9.84619 -9.60705 -9.55462 -8.86049 -8.81964 -8.67382 -8.28526 -6.85984 -5.67126 -2.94745 0.73843 1.13347 2.65090 2.88770 3.00572 3.50104 3.51398 3.55068 3.56350 3.85725 3.88059 4.34469 4.45366 4.54759 4.67850 4.78806 4.83353 4.96627 5.08731 5.09965 5.20863 5.21919 5.46091 5.52532 5.62176 5.67622 5.74596 5.88673 5.93972 5.94321 5.99511 6.05928 6.16564 6.18067 6.29315 6.34094 6.41311 6.49062 6.60327 6.62242 6.76860 6.86221 6.97865 7.12070 7.14134 7.78452 7.83704 8.51313 8.57431 9.62787 10.20144 10.54296 11.55709 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003400 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.107725 B = 8232.208912 C = 9500.265485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.710 5.710 9 C 0.561 3.439 10 O -0.527 6.527 11 C -0.121 4.121 12 C -0.080 4.080 13 C -0.121 4.121 14 C 0.069 3.931 15 C 0.041 3.959 16 C -0.052 4.052 17 O -0.304 6.304 18 C 0.019 3.981 19 C 0.020 3.980 20 O -0.306 6.306 21 N -0.720 5.720 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.901 3.099 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.393 0.607 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 16.017 16.685 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.361 5.361 9 C 0.347 3.653 10 O -0.404 6.404 11 C -0.124 4.124 12 C -0.099 4.099 13 C -0.140 4.140 14 C 0.023 3.977 15 C -0.004 4.004 16 C -0.072 4.072 17 O -0.219 6.219 18 C -0.056 4.056 19 C -0.055 4.055 20 O -0.220 6.220 21 N -0.362 5.362 22 C -0.365 4.365 23 H 0.085 0.915 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.140 0.860 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.140 0.860 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.173 15.591 16.154 23.568 hybrid contribution -0.027 0.757 -0.858 1.145 sum 7.146 16.348 15.296 23.500 Atomic orbital electron populations 1.22459 0.99567 1.00788 0.99738 1.20227 0.91540 0.95566 0.86567 0.93630 1.22175 0.93696 1.02284 0.98815 1.21060 0.95119 0.79851 0.99996 0.87497 1.22185 1.01583 1.00180 0.97975 1.45851 1.16116 1.11764 1.62399 1.17917 0.82274 0.86815 0.78267 1.90813 1.51161 1.55852 1.42579 1.19767 0.94760 0.94400 1.03487 1.21063 0.99069 0.92047 0.97712 1.20312 0.94758 0.96015 1.02878 1.19121 0.95571 0.83646 0.99326 1.18707 0.86609 0.94018 1.01067 1.20504 0.95940 0.92927 0.97818 1.86358 1.28099 1.23902 1.83528 1.23647 1.03952 0.79843 0.98191 1.23658 0.80677 1.02405 0.98808 1.86273 1.25817 1.22128 1.87760 1.42388 1.77970 1.10543 1.05256 1.19153 1.36245 0.93677 0.87403 0.91529 1.24680 1.02193 0.95931 0.97936 1.69645 1.50906 1.08621 1.28819 0.86274 0.77798 0.78639 0.84009 1.21794 1.21858 1.20917 0.92921 0.93542 0.94741 0.92055 0.90548 0.92473 0.93135 0.91696 0.77242 0.84519 0.84212 0.83312 0.85955 0.90300 0.90337 0.85979 0.78341 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.24 2.84 -67.93 -0.19 3.05 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -1.99 4.29 -26.73 -0.11 -2.10 16 5 C 0.14 2.34 2.52 -67.93 -0.17 2.17 16 6 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 7 C -0.16 -2.23 9.48 37.16 0.35 -1.87 16 8 N -0.71 -10.60 4.40 -54.83 -0.24 -10.84 16 9 C 0.56 9.76 7.73 -12.44 -0.10 9.66 16 10 O -0.53 -11.47 16.00 5.29 0.08 -11.39 16 11 C -0.12 -1.77 5.87 -104.99 -0.62 -2.38 16 12 C -0.08 -0.91 9.53 -39.22 -0.37 -1.29 16 13 C -0.12 -1.31 9.94 -39.48 -0.39 -1.71 16 14 C 0.07 0.83 6.50 -38.92 -0.25 0.58 16 15 C 0.04 0.55 6.49 -39.18 -0.25 0.29 16 16 C -0.05 -0.79 9.50 -39.03 -0.37 -1.16 16 17 O -0.30 -3.72 10.41 -32.95 -0.34 -4.06 16 18 C 0.02 0.15 7.26 37.40 0.27 0.42 16 19 C 0.02 0.14 7.26 37.40 0.27 0.41 16 20 O -0.31 -3.21 10.41 -32.40 -0.34 -3.55 16 21 N -0.72 -17.78 4.49 -53.42 -0.24 -18.02 16 22 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 26 Si 0.90 23.26 29.55 -169.99 -5.02 18.23 16 27 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.39 4.57 6.62 -40.82 -0.27 4.30 16 39 H 0.14 1.17 6.39 -52.49 -0.34 0.84 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.15 2.37 7.64 -52.49 -0.40 1.96 16 42 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 47 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -35.58 388.74 -8.48 -44.06 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.13 Total: 11.37 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.83 Total: -3.60 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.24 Total: -56.92 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.60 Total: -18.99 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.58 -8.48 -44.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146305908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.310 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds