Wall clock time and date at job start Tue Mar 31 2020 18:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21588 * 119.99923 * 0.02562 * 9 8 5 11 11 C 1.47603 * 120.00404 * 180.02562 * 9 8 5 12 12 C 1.39701 * 120.09755 * 359.73460 * 11 9 8 13 13 C 1.37727 * 119.96607 * 179.76467 * 12 11 9 14 14 C 1.39008 * 120.26942 * 0.57029 * 13 12 11 15 15 C 1.39258 * 120.04395 * 359.62077 * 14 13 12 16 16 C 1.38287 * 119.96285 * 0.11940 * 15 14 13 17 17 O 1.36144 * 120.75906 * 180.26508 * 15 14 13 18 18 C 1.43165 * 116.71204 * 342.86099 * 17 15 14 19 19 C 1.53467 * 108.23819 * 46.13780 * 18 17 15 20 20 O 1.35969 * 119.23885 * 179.53288 * 14 13 12 21 21 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 2 1 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 2 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 2 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 33 33 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 34 34 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 35 35 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 36 36 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 37 37 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 38 38 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 39 39 H 1.07996 * 120.01418 * 0.02562 * 12 11 9 40 40 H 1.07998 * 119.85907 * 180.30134 * 13 12 11 41 41 H 1.08001 * 120.02557 * 179.97438 * 16 15 14 42 42 H 1.09002 * 109.71759 * 165.83065 * 18 17 15 43 43 H 1.09006 * 109.70819 * 286.45454 * 18 17 15 44 44 H 1.09002 * 109.70341 * 59.87659 * 19 18 17 45 45 H 1.08995 * 109.71278 * 180.49878 * 19 18 17 46 46 H 0.97000 * 119.99792 * 264.99726 * 21 2 1 47 47 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9376 0.4322 0.5720 11 6 5.5474 2.6267 1.2672 12 6 4.6548 3.5276 1.8533 13 6 5.0198 4.8445 2.0248 14 6 6.2699 5.2853 1.6062 15 6 7.1627 4.3932 1.0176 16 6 6.8042 3.0685 0.8475 17 8 8.3928 4.8081 0.6072 18 6 8.5783 6.2195 0.4554 19 6 7.9967 6.9163 1.6929 20 8 6.6049 6.5920 1.7771 21 7 2.0183 -0.6907 -1.1962 22 6 2.1491 -0.0075 -2.3757 23 1 1.8926 1.0405 -2.4242 24 6 2.6172 -0.6605 -3.5077 25 7 2.9303 -1.9375 -3.4485 26 14 2.8029 0.2732 -5.1149 27 1 4.1654 0.8587 -5.1927 28 1 2.5981 -0.6569 -6.2543 29 1 1.7929 1.3602 -5.1754 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 5.1715 -1.3617 2.5381 36 1 3.6546 -1.0593 3.4193 37 1 3.8002 -2.4819 2.3595 38 1 3.3284 1.4129 1.9028 39 1 3.6807 3.1905 2.1755 40 1 4.3303 5.5383 2.4825 41 1 7.4957 2.3759 0.3908 42 1 9.6419 6.4439 0.3731 43 1 8.0591 6.5645 -0.4388 44 1 8.5107 6.5654 2.5878 45 1 8.1176 7.9953 1.5981 46 1 2.2490 -1.6318 -1.1526 47 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146305908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:52 Heat of formation + Delta-G solvation = -100.528447 kcal Electronic energy + Delta-G solvation = -29133.307029 eV Core-core repulsion = 25087.919965 eV Total energy + Delta-G solvation = -4045.387064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35454 -41.00273 -38.69667 -38.35339 -37.98512 -36.07116 -34.05086 -32.83717 -31.83465 -31.56888 -30.40623 -29.45145 -27.56473 -26.15126 -25.64851 -24.52109 -23.13239 -22.24318 -21.32037 -21.13917 -19.93592 -19.28308 -18.83152 -18.31942 -17.45784 -17.14838 -16.66242 -16.51383 -16.05594 -15.93879 -15.64776 -15.53460 -15.45386 -15.08688 -14.95413 -14.90007 -14.47987 -14.37740 -14.18441 -13.63048 -13.49866 -13.34384 -13.16926 -12.93527 -12.87506 -12.78083 -12.63571 -12.29397 -12.18153 -12.16740 -12.03962 -11.79491 -11.55883 -11.53516 -11.39029 -11.00510 -10.89530 -10.04579 -9.78320 -9.22255 -8.92644 -7.90994 -5.15625 -0.29653 0.18310 1.41340 1.44874 1.51098 1.74029 1.92978 2.11078 2.39104 2.56853 2.74181 3.17699 3.43787 3.57258 3.70982 3.85309 3.91783 4.00646 4.03906 4.07233 4.10310 4.18795 4.28343 4.44009 4.52120 4.56522 4.57920 4.69385 4.73140 4.82744 4.86401 4.95077 4.97874 4.99296 5.07926 5.14300 5.18738 5.27183 5.36816 5.40786 5.45770 5.53283 5.65882 5.68952 5.80284 6.28474 6.32709 6.62783 7.31731 7.38331 8.19715 8.38473 9.33002 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003400 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.107725 B = 8232.208912 C = 9500.265485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.044 0.956 4 C -0.117 4.117 5 C 0.145 3.855 6 H 0.046 0.954 7 C -0.151 4.151 8 N -0.694 5.694 9 C 0.554 3.446 10 O -0.588 6.588 11 C -0.141 4.141 12 C -0.066 4.066 13 C -0.115 4.115 14 C 0.073 3.927 15 C 0.032 3.968 16 C -0.079 4.079 17 O -0.328 6.328 18 C 0.009 3.991 19 C 0.016 3.984 20 O -0.310 6.310 21 N -0.732 5.732 22 C -0.223 4.223 23 H 0.070 0.930 24 C -0.079 4.079 25 N -0.969 5.969 26 Si 0.959 3.041 27 H -0.299 1.299 28 H -0.295 1.295 29 H -0.266 1.266 30 H 0.028 0.972 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.413 0.587 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.120 0.880 42 H 0.154 0.846 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.161 0.839 46 H 0.370 0.630 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.730 19.335 19.343 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.064 0.936 7 C -0.209 4.209 8 N -0.346 5.346 9 C 0.342 3.658 10 O -0.469 6.469 11 C -0.145 4.145 12 C -0.085 4.085 13 C -0.133 4.133 14 C 0.026 3.974 15 C -0.013 4.013 16 C -0.098 4.098 17 O -0.243 6.243 18 C -0.065 4.065 19 C -0.058 4.058 20 O -0.225 6.225 21 N -0.372 5.372 22 C -0.356 4.356 23 H 0.088 0.912 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.789 3.211 27 H -0.227 1.227 28 H -0.221 1.221 29 H -0.191 1.191 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.188 0.812 40 H 0.192 0.808 41 H 0.138 0.862 42 H 0.172 0.828 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.178 0.822 46 H 0.201 0.799 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.272 18.983 18.871 27.281 hybrid contribution 0.602 -0.111 -1.593 1.706 sum 5.873 18.872 17.278 26.252 Atomic orbital electron populations 1.22301 0.97578 1.00867 1.00798 1.20557 0.92730 0.95339 0.85975 0.93774 1.22091 0.92377 1.02415 0.98682 1.20885 0.95889 0.80711 0.98450 0.93604 1.22086 1.00296 1.00305 0.98254 1.45695 1.15661 1.11714 1.61535 1.18450 0.82294 0.87714 0.77296 1.90777 1.53005 1.57656 1.45460 1.19616 0.95611 0.93372 1.05892 1.21355 0.99433 0.91707 0.96005 1.20719 0.94644 0.96139 1.01795 1.19329 0.95631 0.84123 0.98272 1.18710 0.87474 0.93625 1.01505 1.20419 0.96292 0.93728 0.99412 1.86323 1.27676 1.26793 1.83536 1.24043 1.06158 0.77602 0.98717 1.24014 0.78803 1.04502 0.98489 1.86268 1.28038 1.20828 1.87329 1.42613 1.78191 1.10093 1.06307 1.19517 1.33702 0.93805 0.88555 0.91192 1.25414 1.03640 0.96841 1.01188 1.69796 1.53112 1.10107 1.29084 0.85341 0.77447 0.77796 0.80510 1.22705 1.22118 1.19074 0.95258 0.93978 0.90224 0.87067 0.90453 0.94614 0.89588 0.91094 0.74899 0.81211 0.80808 0.86177 0.82812 0.90397 0.89601 0.82193 0.79879 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.49 71.98 0.68 -4.30 16 2 C 0.16 5.87 2.84 44.99 0.13 5.99 16 3 H 0.04 1.62 7.56 -2.39 -0.02 1.60 16 4 C -0.12 -3.26 4.29 30.60 0.13 -3.13 16 5 C 0.15 4.71 2.52 44.99 0.11 4.82 16 6 H 0.05 2.09 7.05 -2.38 -0.02 2.08 16 7 C -0.15 -4.05 9.48 71.98 0.68 -3.36 16 8 N -0.69 -20.20 4.40 -445.63 -1.96 -22.16 16 9 C 0.55 20.12 7.73 86.72 0.67 20.79 16 10 O -0.59 -27.88 16.00 -3.99 -0.06 -27.94 16 11 C -0.14 -4.23 5.87 -20.10 -0.12 -4.34 16 12 C -0.07 -1.36 9.53 22.50 0.21 -1.14 16 13 C -0.11 -2.13 9.94 22.33 0.22 -1.91 16 14 C 0.07 1.62 6.50 22.70 0.15 1.77 16 15 C 0.03 0.86 6.49 22.53 0.15 1.01 16 16 C -0.08 -2.53 9.50 22.63 0.22 -2.31 16 17 O -0.33 -8.13 10.41 -82.99 -0.86 -9.00 16 18 C 0.01 0.13 7.26 72.14 0.52 0.65 16 19 C 0.02 0.18 7.26 72.14 0.52 0.70 16 20 O -0.31 -5.64 10.41 -81.01 -0.84 -6.48 16 21 N -0.73 -36.74 4.49 -322.93 -1.45 -38.19 16 22 C -0.22 -12.75 9.93 84.04 0.83 -11.92 16 23 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 25 N -0.97 -62.34 13.06 21.65 0.28 -62.06 16 26 Si 0.96 49.05 29.55 68.60 2.03 51.08 16 27 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 28 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 29 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.41 8.34 6.62 -92.71 -0.61 7.72 16 39 H 0.17 2.18 6.39 -2.91 -0.02 2.17 16 40 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.12 4.39 7.64 -2.91 -0.02 4.37 16 42 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.37 20.32 7.80 -92.71 -0.72 19.60 16 47 H 0.25 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -84.71 388.74 2.37 -82.34 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.34 Total: 33.38 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.58 Total: -0.97 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -3.13 Total: -122.41 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.77 Total: -43.42 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.03 Total: 51.08 kcal Total: -84.71 2.37 -82.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146305908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.186 kcal (2) G-P(sol) polarization free energy of solvation -84.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds