Wall clock time and date at job start Tue Mar 31 2020 17:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00018 * 2 1 4 4 C 1.38793 * 120.02718 * 0.02562 * 3 2 1 5 5 C 1.38161 * 120.05679 * 179.97438 * 4 3 2 6 6 C 1.38198 * 120.10669 * 359.74787 * 5 4 3 7 7 C 1.38753 * 120.05276 * 0.50973 * 6 5 4 8 8 O 1.35898 * 120.02586 * 179.76765 * 7 6 5 9 9 C 1.42898 * 117.00220 * 359.71939 * 8 7 6 10 10 C 1.50696 * 109.47385 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00008 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99767 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47151 * 35.00555 * 13 12 10 15 15 C 1.52994 * 109.47311 * 275.00441 * 13 12 10 16 16 C 1.53002 * 109.46662 * 155.00181 * 13 12 10 17 17 C 1.53503 * 114.20285 * 180.02562 * 16 13 12 18 18 N 1.47066 * 87.98596 * 87.51823 * 17 16 13 19 19 C 1.36938 * 136.05640 * 207.07967 * 18 17 16 20 20 H 1.08004 * 119.99749 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99984 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99701 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47245 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46754 * 120.00489 * 23 21 19 26 26 H 1.48495 * 109.46700 * 240.00164 * 23 21 19 27 27 C 1.47060 * 87.88579 * 27.11915 * 18 17 16 28 28 C 1.38613 * 120.02884 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47040 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47232 * 300.00498 * 1 2 3 31 31 H 1.09004 * 109.46786 * 60.00351 * 1 2 3 32 32 H 1.07999 * 119.97337 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.94502 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.97234 * 180.25323 * 6 5 4 35 35 H 1.09004 * 109.46821 * 60.00416 * 9 8 7 36 36 H 1.08999 * 109.47292 * 300.00754 * 9 8 7 37 37 H 0.96992 * 120.00236 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.47088 * 180.02562 * 15 13 12 39 39 H 1.09003 * 109.46727 * 299.99853 * 15 13 12 40 40 H 1.08999 * 109.47339 * 59.99949 * 15 13 12 41 41 H 1.08993 * 113.41318 * 46.80178 * 16 13 12 42 42 H 1.09000 * 113.46355 * 332.73775 * 17 16 13 43 43 H 1.09003 * 113.46309 * 202.30220 * 17 16 13 44 44 H 0.97003 * 119.99575 * 179.97438 * 22 21 19 45 45 H 1.09006 * 113.47077 * 87.66003 * 27 18 17 46 46 H 1.09003 * 113.47044 * 218.03568 * 27 18 17 47 47 H 1.07997 * 120.05465 * 0.04499 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6066 0.0011 6 6 3.2971 3.6822 0.0063 7 6 4.0567 2.5210 0.0004 8 8 5.4136 2.5961 0.0008 9 6 5.9911 3.9031 0.0013 10 6 7.4937 3.7885 0.0023 11 8 8.0185 2.6950 0.0022 12 7 8.2545 4.9010 0.0034 13 6 9.7153 4.7895 0.0039 14 1 10.0137 3.9230 -0.5862 15 6 10.2137 4.6241 1.4409 16 6 10.3234 6.0547 -0.6046 17 6 11.8575 6.0526 -0.6582 18 7 11.7594 5.3774 -1.9610 19 6 12.5441 4.5257 -2.6917 20 1 13.4994 4.2047 -2.3035 21 6 12.1116 4.0750 -3.9314 22 7 10.9476 4.4666 -4.4046 23 14 13.1818 2.9125 -4.9278 24 1 14.4323 2.6269 -4.1796 25 1 12.4465 1.6447 -5.1663 26 1 13.5176 3.5425 -6.2299 27 6 10.4481 6.0203 -2.1341 28 6 3.4302 1.2841 0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2121 2.3187 0.0014 33 1 1.3277 4.5115 0.0019 34 1 3.7847 4.6459 0.0109 35 1 5.6677 4.4429 0.8914 36 1 5.6681 4.4434 -0.8886 37 1 7.8349 5.7755 0.0039 38 1 11.3006 4.5416 1.4412 39 1 9.9153 5.4907 2.0309 40 1 9.7804 3.7228 1.8743 41 1 9.8909 6.9750 -0.2122 42 1 12.3180 5.4382 0.1156 43 1 12.2911 7.0509 -0.7181 44 1 10.6456 4.1519 -5.2711 45 1 10.5063 7.0100 -2.5872 46 1 9.7104 5.3789 -2.6164 47 1 4.0197 0.3792 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282745169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:17 Heat of formation + Delta-G solvation = -18.556346 kcal Electronic energy + Delta-G solvation = -28085.450659 eV Core-core repulsion = 24043.618172 eV Total energy + Delta-G solvation = -4041.832487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.73991 -39.87665 -39.07201 -38.08284 -36.52460 -34.60733 -32.21871 -31.44129 -30.62966 -29.71807 -28.23670 -27.60420 -27.28750 -24.69471 -23.85703 -23.05186 -22.31365 -21.54309 -20.26145 -19.04733 -18.84082 -17.13402 -16.90973 -16.70865 -16.48950 -16.39381 -16.00705 -15.84712 -15.77220 -14.88708 -14.82317 -14.30494 -13.92800 -13.83054 -13.78555 -13.31070 -13.10567 -12.99111 -12.78681 -12.52917 -12.42130 -12.04750 -11.95108 -11.81200 -11.62952 -11.33426 -11.08471 -10.97534 -10.89941 -10.79497 -10.68263 -10.30563 -9.88655 -9.76836 -9.58498 -9.20199 -8.83618 -8.74029 -8.70292 -8.38049 -6.84562 -5.73098 -3.05163 1.12875 1.17148 2.39135 2.78126 3.07066 3.43478 3.48443 3.50500 3.51417 3.78517 4.45264 4.50170 4.61171 4.74852 4.77789 4.79741 4.79868 4.89914 4.95588 4.99183 5.12325 5.21193 5.26802 5.27615 5.35259 5.56892 5.69147 5.76885 5.88449 5.93450 5.97941 6.04848 6.11088 6.16176 6.23492 6.30123 6.45609 6.53600 6.64392 6.71326 6.85788 7.03673 7.19105 7.20744 7.32446 7.58915 7.71856 8.01612 8.43078 9.07571 9.74741 10.67004 11.44486 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.002280 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.047925 B =12280.241354 C =13365.246094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.165 3.835 4 C -0.248 4.248 5 C -0.040 4.040 6 C -0.247 4.247 7 C 0.173 3.827 8 O -0.283 6.283 9 C 0.042 3.958 10 C 0.514 3.486 11 O -0.512 6.512 12 N -0.715 5.715 13 C 0.172 3.828 14 H 0.104 0.896 15 C -0.158 4.158 16 C -0.156 4.156 17 C 0.126 3.874 18 N -0.608 5.608 19 C -0.217 4.217 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.159 3.841 28 C -0.185 4.185 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.396 0.604 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.034 0.966 44 H 0.252 0.748 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.931 1.740 12.759 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.119 3.881 4 C -0.267 4.267 5 C -0.058 4.058 6 C -0.266 4.266 7 C 0.127 3.873 8 O -0.195 6.195 9 C -0.037 4.037 10 C 0.297 3.703 11 O -0.386 6.386 12 N -0.367 5.367 13 C 0.069 3.931 14 H 0.122 0.878 15 C -0.216 4.216 16 C -0.176 4.176 17 C -0.001 4.001 18 N -0.334 5.334 19 C -0.345 4.345 20 H 0.099 0.901 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.033 3.967 28 C -0.204 4.204 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.229 0.771 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.091 0.909 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.196 0.338 12.467 24.593 hybrid contribution 0.007 0.473 -0.768 0.902 sum -21.190 0.810 11.699 24.218 Atomic orbital electron populations 1.23079 0.78120 1.04030 1.01457 1.86079 1.21535 1.26758 1.88373 1.18550 0.91277 0.84246 0.94025 1.21119 1.00028 0.92228 1.13321 1.20684 0.93670 0.97102 0.94393 1.21200 0.94956 0.97537 1.12867 1.18612 0.82230 0.93360 0.93143 1.86180 1.16750 1.28757 1.87789 1.22559 0.92722 0.84592 1.03820 1.19853 0.87676 0.85241 0.77511 1.90782 1.74059 1.26483 1.47294 1.45880 1.07641 1.07853 1.75334 1.20643 0.76604 0.99751 0.96104 0.87756 1.22136 1.01986 1.01136 0.96358 1.23282 0.98054 0.95649 1.00581 1.22416 0.91908 0.95749 0.89995 1.45602 1.19742 1.50319 1.17777 1.18957 0.99430 1.17787 0.98287 0.90105 1.24779 0.97461 1.00679 0.97463 1.69824 1.19681 1.47698 1.19366 0.86058 0.79420 0.80418 0.79967 1.20430 1.21607 1.21820 1.22113 0.89737 0.95603 0.89288 1.19448 0.91452 0.97097 1.12438 0.88145 0.92548 0.92492 0.85409 0.85398 0.85087 0.89028 0.88696 0.77060 0.91193 0.93103 0.92707 0.91220 0.93779 0.94809 0.93768 0.95833 0.90902 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.27 10.49 -19.42 -0.20 -3.47 16 3 C 0.16 1.84 6.68 -39.24 -0.26 1.57 16 4 C -0.25 -2.25 9.04 -39.40 -0.36 -2.60 16 5 C -0.04 -0.35 10.04 -39.62 -0.40 -0.75 16 6 C -0.25 -2.45 9.04 -39.41 -0.36 -2.81 16 7 C 0.17 2.20 6.68 -39.24 -0.26 1.94 16 8 O -0.28 -4.19 9.67 -39.33 -0.38 -4.57 16 9 C 0.04 0.49 5.22 36.00 0.19 0.68 16 10 C 0.51 8.21 7.87 -10.99 -0.09 8.13 16 11 O -0.51 -10.97 16.16 -14.36 -0.23 -11.20 16 12 N -0.71 -10.11 5.08 -53.81 -0.27 -10.38 16 13 C 0.17 2.98 2.41 -67.93 -0.16 2.81 16 14 H 0.10 2.40 7.36 -51.93 -0.38 2.01 16 15 C -0.16 -2.34 9.29 37.15 0.35 -2.00 16 16 C -0.16 -2.70 3.73 -90.10 -0.34 -3.04 16 17 C 0.13 2.49 8.08 -8.51 -0.07 2.42 16 18 N -0.61 -15.49 3.58 -184.76 -0.66 -16.16 16 19 C -0.22 -6.18 10.75 -15.06 -0.16 -6.34 16 20 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 22 N -0.92 -27.81 11.51 55.49 0.64 -27.17 16 23 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 C 0.16 3.62 6.92 -8.51 -0.06 3.57 16 28 C -0.19 -2.37 9.93 -39.29 -0.39 -2.76 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.13 0.83 6.29 -52.49 -0.33 0.50 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.99 6.29 -52.49 -0.33 0.66 16 35 H 0.09 0.75 7.65 -51.93 -0.40 0.35 16 36 H 0.10 0.91 7.67 -51.93 -0.40 0.51 16 37 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 38 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.83 6.43 -51.93 -0.33 0.49 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 1.89 7.10 -51.93 -0.37 1.52 16 47 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -36.74 388.67 -8.70 -45.44 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.95 Total: 2.16 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.47 Total: 1.67 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.30 Total: -53.71 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.82 Total: -19.24 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.74 -8.70 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282745169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.883 kcal (2) G-P(sol) polarization free energy of solvation -36.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds