Wall clock time and date at job start Tue Mar 31 2020 17:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00018 * 2 1 4 4 C 1.38793 * 120.02718 * 0.02562 * 3 2 1 5 5 C 1.38161 * 120.05679 * 179.97438 * 4 3 2 6 6 C 1.38198 * 120.10669 * 359.74787 * 5 4 3 7 7 C 1.38753 * 120.05276 * 0.50973 * 6 5 4 8 8 O 1.35898 * 120.02586 * 179.76765 * 7 6 5 9 9 C 1.42898 * 117.00220 * 359.71939 * 8 7 6 10 10 C 1.50696 * 109.47385 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00008 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99767 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47151 * 35.00555 * 13 12 10 15 15 C 1.52994 * 109.47311 * 275.00441 * 13 12 10 16 16 C 1.53002 * 109.46662 * 155.00181 * 13 12 10 17 17 C 1.53503 * 114.20285 * 180.02562 * 16 13 12 18 18 N 1.47066 * 87.98596 * 87.51823 * 17 16 13 19 19 C 1.36938 * 136.05640 * 207.07967 * 18 17 16 20 20 H 1.08004 * 119.99749 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99984 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99701 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47245 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46754 * 120.00489 * 23 21 19 26 26 H 1.48495 * 109.46700 * 240.00164 * 23 21 19 27 27 C 1.47060 * 87.88579 * 27.11915 * 18 17 16 28 28 C 1.38613 * 120.02884 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47040 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47232 * 300.00498 * 1 2 3 31 31 H 1.09004 * 109.46786 * 60.00351 * 1 2 3 32 32 H 1.07999 * 119.97337 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.94502 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.97234 * 180.25323 * 6 5 4 35 35 H 1.09004 * 109.46821 * 60.00416 * 9 8 7 36 36 H 1.08999 * 109.47292 * 300.00754 * 9 8 7 37 37 H 0.96992 * 120.00236 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.47088 * 180.02562 * 15 13 12 39 39 H 1.09003 * 109.46727 * 299.99853 * 15 13 12 40 40 H 1.08999 * 109.47339 * 59.99949 * 15 13 12 41 41 H 1.08993 * 113.41318 * 46.80178 * 16 13 12 42 42 H 1.09000 * 113.46355 * 332.73775 * 17 16 13 43 43 H 1.09003 * 113.46309 * 202.30220 * 17 16 13 44 44 H 0.97003 * 119.99575 * 179.97438 * 22 21 19 45 45 H 1.09006 * 113.47077 * 87.66003 * 27 18 17 46 46 H 1.09003 * 113.47044 * 218.03568 * 27 18 17 47 47 H 1.07997 * 120.05465 * 0.04499 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6066 0.0011 6 6 3.2971 3.6822 0.0063 7 6 4.0567 2.5210 0.0004 8 8 5.4136 2.5961 0.0008 9 6 5.9911 3.9031 0.0013 10 6 7.4937 3.7885 0.0023 11 8 8.0185 2.6950 0.0022 12 7 8.2545 4.9010 0.0034 13 6 9.7153 4.7895 0.0039 14 1 10.0137 3.9230 -0.5862 15 6 10.2137 4.6241 1.4409 16 6 10.3234 6.0547 -0.6046 17 6 11.8575 6.0526 -0.6582 18 7 11.7594 5.3774 -1.9610 19 6 12.5441 4.5257 -2.6917 20 1 13.4994 4.2047 -2.3035 21 6 12.1116 4.0750 -3.9314 22 7 10.9476 4.4666 -4.4046 23 14 13.1818 2.9125 -4.9278 24 1 14.4323 2.6269 -4.1796 25 1 12.4465 1.6447 -5.1663 26 1 13.5176 3.5425 -6.2299 27 6 10.4481 6.0203 -2.1341 28 6 3.4302 1.2841 0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2121 2.3187 0.0014 33 1 1.3277 4.5115 0.0019 34 1 3.7847 4.6459 0.0109 35 1 5.6677 4.4429 0.8914 36 1 5.6681 4.4434 -0.8886 37 1 7.8349 5.7755 0.0039 38 1 11.3006 4.5416 1.4412 39 1 9.9153 5.4907 2.0309 40 1 9.7804 3.7228 1.8743 41 1 9.8909 6.9750 -0.2122 42 1 12.3180 5.4382 0.1156 43 1 12.2911 7.0509 -0.7181 44 1 10.6456 4.1519 -5.2711 45 1 10.5063 7.0100 -2.5872 46 1 9.7104 5.3789 -2.6164 47 1 4.0197 0.3792 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282745169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:16 Heat of formation + Delta-G solvation = -44.649472 kcal Electronic energy + Delta-G solvation = -28086.582141 eV Core-core repulsion = 24043.618172 eV Total energy + Delta-G solvation = -4042.963969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63220 -41.03833 -40.20234 -39.46719 -37.33932 -36.08761 -34.22825 -32.43095 -31.78810 -30.52371 -29.55421 -29.07565 -27.94161 -26.36675 -25.57162 -23.91925 -23.56382 -22.67201 -21.53407 -20.41063 -19.81266 -18.76738 -18.18247 -17.80750 -17.45987 -17.27281 -17.00518 -16.90856 -16.68469 -16.63594 -15.92394 -15.73445 -15.47172 -15.11453 -14.65739 -14.56940 -14.47617 -14.34499 -13.80718 -13.66870 -13.40167 -13.22803 -13.18953 -13.06288 -12.87529 -12.60780 -12.51617 -12.41341 -12.33090 -11.99554 -11.81346 -11.79843 -11.68674 -11.49237 -11.07957 -10.92521 -10.79532 -10.09100 -9.56289 -9.13523 -8.88610 -7.92034 -5.22563 0.35842 0.40117 1.40252 1.42947 1.44571 1.51850 1.56774 2.27007 2.45685 2.73919 2.83793 3.30902 3.50003 3.57518 3.72015 3.84113 3.91069 3.98281 4.12568 4.13705 4.14750 4.21212 4.39956 4.41544 4.43602 4.52257 4.55268 4.71032 4.73124 4.78675 4.82457 4.84133 4.88541 5.02349 5.20273 5.22487 5.25774 5.26834 5.32315 5.44182 5.48348 5.53199 5.55652 5.72591 5.96692 6.26383 6.42774 6.59682 6.91674 7.27553 7.61290 8.62108 9.25714 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.002280 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.047925 B =12280.241354 C =13365.246094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.155 3.845 4 C -0.244 4.244 5 C -0.035 4.035 6 C -0.245 4.245 7 C 0.151 3.849 8 O -0.323 6.323 9 C 0.048 3.952 10 C 0.506 3.494 11 O -0.580 6.580 12 N -0.698 5.698 13 C 0.176 3.824 14 H 0.037 0.963 15 C -0.147 4.147 16 C -0.117 4.117 17 C 0.124 3.876 18 N -0.644 5.644 19 C -0.221 4.221 20 H 0.083 0.917 21 C -0.072 4.072 22 N -0.952 5.952 23 Si 0.972 3.028 24 H -0.263 1.263 25 H -0.299 1.299 26 H -0.289 1.289 27 C 0.152 3.848 28 C -0.221 4.221 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.420 0.580 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.126 0.874 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.245 0.755 45 H 0.023 0.977 46 H 0.031 0.969 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.923 4.741 14.615 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.109 3.891 4 C -0.262 4.262 5 C -0.052 4.052 6 C -0.264 4.264 7 C 0.106 3.894 8 O -0.236 6.236 9 C -0.030 4.030 10 C 0.292 3.708 11 O -0.459 6.459 12 N -0.351 5.351 13 C 0.071 3.929 14 H 0.055 0.945 15 C -0.205 4.205 16 C -0.137 4.137 17 C -0.001 4.001 18 N -0.371 5.371 19 C -0.350 4.350 20 H 0.101 0.899 21 C -0.265 4.265 22 N -0.601 5.601 23 Si 0.801 3.199 24 H -0.187 1.187 25 H -0.227 1.227 26 H -0.216 1.216 27 C 0.027 3.973 28 C -0.241 4.241 29 H 0.134 0.866 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.175 0.825 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.258 0.742 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.058 0.942 41 H 0.144 0.856 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.200 3.409 14.365 27.500 hybrid contribution 0.556 -0.463 -1.294 1.482 sum -22.645 2.946 13.071 26.312 Atomic orbital electron populations 1.23401 0.75796 1.05661 1.02719 1.86048 1.24028 1.26944 1.88340 1.18687 0.90811 0.85415 0.94181 1.21497 1.01413 0.91556 1.11771 1.21179 0.93412 0.98276 0.92381 1.21532 0.95584 0.97435 1.11816 1.18806 0.81554 0.94340 0.94707 1.86114 1.18313 1.30633 1.88563 1.22685 0.89014 0.84209 1.07085 1.20733 0.89781 0.84417 0.75862 1.90754 1.75646 1.29070 1.50416 1.45649 1.06392 1.08869 1.74228 1.20337 0.78572 0.97182 0.96771 0.94475 1.22026 1.01555 1.02259 0.94649 1.23038 0.96835 0.97727 0.96051 1.22663 0.93827 0.96206 0.87412 1.45968 1.20603 1.50740 1.19790 1.19328 0.99538 1.17730 0.98370 0.89944 1.25586 0.98901 1.02968 0.98995 1.70007 1.21349 1.49423 1.19333 0.85089 0.78308 0.77927 0.78590 1.18732 1.22655 1.21578 1.22125 0.87936 0.94200 0.93071 1.19555 0.92678 0.96862 1.14972 0.86559 0.91041 0.91294 0.82526 0.81579 0.82263 0.84498 0.86116 0.74158 0.91547 0.89081 0.94161 0.85594 0.92768 0.92476 0.94645 0.95936 0.95020 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.15 10.49 -92.41 -0.97 -8.12 16 3 C 0.15 3.46 6.68 22.49 0.15 3.61 16 4 C -0.24 -3.81 9.04 22.38 0.20 -3.61 16 5 C -0.03 -0.47 10.04 22.24 0.22 -0.25 16 6 C -0.25 -4.22 9.04 22.38 0.20 -4.02 16 7 C 0.15 3.89 6.68 22.49 0.15 4.04 16 8 O -0.32 -9.88 9.67 -73.37 -0.71 -10.59 16 9 C 0.05 1.05 5.22 71.23 0.37 1.42 16 10 C 0.51 16.32 7.87 87.66 0.69 17.01 16 11 O -0.58 -26.51 16.16 15.99 0.26 -26.25 16 12 N -0.70 -18.77 5.08 -442.53 -2.25 -21.02 16 13 C 0.18 5.99 2.41 44.99 0.11 6.10 16 14 H 0.04 1.80 7.36 -2.39 -0.02 1.78 16 15 C -0.15 -4.09 9.29 71.98 0.67 -3.43 16 16 C -0.12 -3.79 3.73 -10.46 -0.04 -3.83 16 17 C 0.12 4.65 8.08 83.18 0.67 5.32 16 18 N -0.64 -33.17 3.58 -738.47 -2.65 -35.82 16 19 C -0.22 -12.86 10.75 84.03 0.90 -11.96 16 20 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 21 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 22 N -0.95 -60.11 11.51 21.65 0.25 -59.86 16 23 Si 0.97 48.50 29.55 68.60 2.03 50.53 16 24 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 27 C 0.15 7.01 6.92 83.18 0.58 7.58 16 28 C -0.22 -6.09 9.93 22.46 0.22 -5.87 16 29 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 31 H 0.07 0.53 7.66 -2.38 -0.02 0.51 16 32 H 0.16 1.45 6.29 -2.91 -0.02 1.43 16 33 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.16 1.70 6.29 -2.91 -0.02 1.69 16 35 H 0.14 1.73 7.65 -2.39 -0.02 1.71 16 36 H 0.12 2.01 7.67 -2.39 -0.02 1.99 16 37 H 0.42 7.07 8.60 -92.71 -0.80 6.27 16 38 H 0.07 1.89 6.50 -2.39 -0.02 1.87 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.05 1.93 6.43 -2.39 -0.02 1.91 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.03 1.70 7.10 -2.39 -0.02 1.69 16 47 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -89.67 388.67 2.83 -86.83 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.19 Total: 14.70 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.68 Total: 9.59 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -4.65 Total: -116.70 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.42 Total: -44.96 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -89.67 2.83 -86.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282745169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.182 kcal (2) G-P(sol) polarization free energy of solvation -89.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds