Wall clock time and date at job start Tue Mar 31 2020 17:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 C 1.53007 * 109.46940 * 119.99611 * 2 1 3 5 5 C 1.52998 * 109.47135 * 174.99846 * 4 2 1 6 6 H 1.09006 * 109.46941 * 55.00202 * 5 4 2 7 7 C 1.53000 * 109.47019 * 175.00015 * 5 4 2 8 8 N 1.46504 * 109.47148 * 295.00496 * 5 4 2 9 9 C 1.34777 * 119.99872 * 155.00065 * 8 5 4 10 10 O 1.21358 * 119.99918 * 359.97438 * 9 8 5 11 11 C 1.49319 * 119.99666 * 179.71906 * 9 8 5 12 12 O 1.21388 * 119.99905 * 0.27957 * 11 9 8 13 13 N 1.34778 * 120.00009 * 180.27486 * 11 9 8 14 14 C 1.39743 * 119.99826 * 175.50033 * 13 11 9 15 15 C 1.38994 * 120.00204 * 214.86485 * 14 13 11 16 16 C 1.37966 * 119.99094 * 179.78979 * 15 14 13 17 17 C 1.38940 * 120.00387 * 0.49142 * 16 15 14 18 18 O 1.35765 * 119.99051 * 179.72534 * 17 16 15 19 19 C 1.34804 * 116.99560 * 185.36779 * 18 17 16 20 20 H 1.07997 * 120.00366 * 354.95577 * 19 18 17 21 21 C 1.38654 * 119.99457 * 174.96139 * 19 18 17 22 22 N 1.31557 * 120.00439 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99614 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47329 * 60.00319 * 23 21 19 25 25 H 1.48509 * 109.46994 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47444 * 299.99755 * 23 21 19 27 27 C 1.38931 * 120.01942 * 359.73775 * 17 16 15 28 28 C 1.37969 * 119.99989 * 0.02741 * 27 17 16 29 29 H 1.09005 * 109.47288 * 300.00422 * 1 2 3 30 30 H 1.09002 * 109.46692 * 60.00065 * 1 2 3 31 31 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47080 * 239.99514 * 2 1 3 33 33 H 1.09002 * 109.46747 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46691 * 299.99698 * 3 2 1 35 35 H 1.08996 * 109.47459 * 59.99746 * 3 2 1 36 36 H 1.09004 * 109.46739 * 54.99936 * 4 2 1 37 37 H 1.08994 * 109.46893 * 295.00092 * 4 2 1 38 38 H 1.08994 * 109.47290 * 299.99838 * 7 5 4 39 39 H 1.09000 * 109.46692 * 60.00153 * 7 5 4 40 40 H 1.09001 * 109.46964 * 179.97438 * 7 5 4 41 41 H 0.97005 * 119.99904 * 334.99454 * 8 5 4 42 42 H 0.96994 * 119.99818 * 355.49756 * 13 11 9 43 43 H 1.08004 * 120.00515 * 359.97438 * 15 14 13 44 44 H 1.07998 * 119.99795 * 180.22778 * 16 15 14 45 45 H 0.97004 * 120.00280 * 180.02562 * 22 21 19 46 46 H 1.07997 * 120.00472 * 180.02562 * 27 17 16 47 47 H 1.08008 * 120.00164 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1881 6 1 3.9954 0.1612 1.0528 7 6 4.0850 -1.4393 2.4920 8 7 3.9479 -1.6872 0.0627 9 6 5.1612 -1.5480 -0.5074 10 8 5.9361 -0.7130 -0.0889 11 6 5.5540 -2.4248 -1.6504 12 8 4.7787 -3.2597 -2.0693 13 7 6.7694 -2.2894 -2.2170 14 6 7.1733 -3.1708 -3.2233 15 6 8.5060 -3.5544 -3.3176 16 6 8.9037 -4.4280 -4.3085 17 6 7.9741 -4.9165 -5.2184 18 8 8.3669 -5.7718 -6.1968 19 6 7.4411 -6.1208 -7.1124 20 1 6.4195 -5.7885 -7.0012 21 6 7.8004 -6.9064 -8.1969 22 7 9.0449 -7.3109 -8.3326 23 14 6.5175 -7.3906 -9.4653 24 1 5.9453 -6.1672 -10.0826 25 1 7.1518 -8.2249 -10.5174 26 1 5.4356 -8.1641 -8.8048 27 6 6.6429 -4.5296 -5.1273 28 6 6.2437 -3.6597 -4.1336 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6053 -1.7198 1.2953 37 1 1.7516 -0.1582 2.1370 38 1 3.8000 -0.8023 3.3293 39 1 3.6544 -2.4315 2.6273 40 1 5.1713 -1.5180 2.4482 41 1 3.3284 -2.3544 -0.2720 42 1 7.3636 -1.5800 -1.9263 43 1 9.2295 -3.1708 -2.6134 44 1 9.9385 -4.7290 -4.3797 45 1 9.2964 -7.8602 -9.0915 46 1 5.9204 -4.9097 -5.8344 47 1 5.2088 -3.3586 -4.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319434714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:07 Heat of formation + Delta-G solvation = -84.113716 kcal Electronic energy + Delta-G solvation = -27946.222467 eV Core-core repulsion = 23901.547200 eV Total energy + Delta-G solvation = -4044.675268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.94462 -39.52082 -38.56653 -37.57553 -36.60777 -34.85576 -33.92346 -32.22386 -31.36208 -30.26856 -28.33865 -27.56785 -27.10135 -25.61487 -24.74089 -22.48972 -21.89911 -21.18652 -20.30764 -20.19365 -18.85294 -17.95197 -17.24410 -17.03815 -16.34830 -15.88194 -15.71553 -15.36445 -14.91839 -14.59266 -14.48650 -14.23719 -13.91544 -13.68825 -13.65829 -13.59439 -13.21662 -12.94566 -12.80511 -12.64313 -12.60407 -12.54459 -12.12660 -11.86251 -11.82420 -11.75809 -11.60544 -11.36655 -11.08881 -11.03877 -11.03439 -10.82418 -10.77974 -10.47589 -9.79198 -9.62811 -9.48685 -9.22147 -8.74833 -8.26580 -7.01632 -6.48128 -4.05537 1.26960 2.12725 2.18461 2.38932 3.12634 3.13087 3.16528 3.23899 3.61865 3.95074 4.17843 4.40549 4.42046 4.49447 4.54599 4.83144 4.90521 4.95451 5.06120 5.19827 5.21830 5.26097 5.29652 5.34450 5.43665 5.49575 5.56900 5.60012 5.62666 5.67752 5.79202 5.86672 5.94108 5.96952 6.03834 6.08727 6.10732 6.23983 6.62814 6.72480 6.88835 6.95505 7.04671 7.23933 7.38240 7.45328 7.68205 7.73913 7.96539 8.09471 8.97226 9.65619 10.69377 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002144 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.768705 B =13059.337157 C =14162.950613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.123 4.123 5 C 0.136 3.864 6 H 0.096 0.904 7 C -0.166 4.166 8 N -0.696 5.696 9 C 0.513 3.487 10 O -0.523 6.523 11 C 0.494 3.506 12 O -0.510 6.510 13 N -0.624 5.624 14 C 0.022 3.978 15 C -0.085 4.085 16 C -0.178 4.178 17 C 0.150 3.850 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.222 4.222 28 C -0.060 4.060 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.412 0.588 42 H 0.414 0.586 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.271 0.729 46 H 0.132 0.868 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 14.397 18.580 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.208 4.208 4 C -0.161 4.161 5 C 0.032 3.968 6 H 0.114 0.886 7 C -0.224 4.224 8 N -0.349 5.349 9 C 0.294 3.706 10 O -0.399 6.399 11 C 0.276 3.724 12 O -0.385 6.385 13 N -0.269 5.269 14 C -0.070 4.070 15 C -0.105 4.105 16 C -0.198 4.198 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.194 1.194 27 C -0.242 4.242 28 C -0.080 4.080 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.249 0.751 42 H 0.250 0.750 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.081 0.919 46 H 0.149 0.851 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.970 14.148 18.393 26.584 hybrid contribution -0.662 -0.241 -0.593 0.921 sum -13.633 13.907 17.800 26.384 Atomic orbital electron populations 1.21837 0.94965 1.01833 1.01816 1.21154 0.95869 0.96618 0.98323 1.21908 1.01334 0.95764 1.01799 1.21992 0.93417 1.01644 0.99044 1.21201 0.95081 0.95142 0.85326 0.88641 1.22199 1.02261 1.01400 0.96543 1.45871 1.16259 1.38997 1.33815 1.20157 0.82753 0.83925 0.83789 1.90748 1.50642 1.35077 1.63412 1.20064 0.83536 0.84744 0.84088 1.90773 1.50372 1.35032 1.62365 1.42844 1.16595 1.31737 1.35742 1.17240 0.94102 1.02014 0.93678 1.20390 0.93731 0.97936 0.98425 1.20002 0.99107 1.02789 0.97861 1.19446 0.92169 0.89143 0.89730 1.83969 1.38862 1.52043 1.32704 1.21309 0.90771 1.32742 1.01975 0.88970 1.25302 0.97398 0.96307 0.97472 1.70027 1.16623 1.33092 1.29755 0.85770 0.79361 0.78939 0.79330 1.19443 1.20256 1.19426 1.21086 0.96348 1.04411 1.02340 1.20836 0.98859 0.96283 0.91994 0.92726 0.92592 0.92594 0.90838 0.92376 0.92651 0.92640 0.90988 0.90008 0.91334 0.92171 0.91840 0.75120 0.75010 0.86438 0.85843 0.91887 0.85052 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 2 C -0.10 -0.65 2.86 -90.61 -0.26 -0.91 16 3 C -0.15 -0.99 8.95 37.16 0.33 -0.66 16 4 C -0.12 -0.68 4.22 -26.73 -0.11 -0.80 16 5 C 0.14 1.02 2.44 -67.93 -0.17 0.86 16 6 H 0.10 0.82 5.78 -51.93 -0.30 0.52 16 7 C -0.17 -1.17 9.48 37.16 0.35 -0.82 16 8 N -0.70 -6.53 4.44 -54.28 -0.24 -6.78 16 9 C 0.51 6.30 7.85 -11.65 -0.09 6.21 16 10 O -0.52 -7.17 16.14 5.49 0.09 -7.08 16 11 C 0.49 7.20 7.73 -11.65 -0.09 7.11 16 12 O -0.51 -8.55 13.91 5.46 0.08 -8.47 16 13 N -0.62 -9.15 5.32 -10.27 -0.05 -9.21 16 14 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 15 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 16 C -0.18 -3.65 9.98 -39.42 -0.39 -4.05 16 17 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 18 O -0.17 -4.87 9.75 0.07 0.00 -4.87 16 19 C -0.39 -10.85 9.48 30.89 0.29 -10.56 16 20 H 0.09 2.36 5.19 -52.49 -0.27 2.09 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 23 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 27 C -0.22 -4.90 9.16 -39.42 -0.36 -5.26 16 28 C -0.06 -1.18 8.69 -39.40 -0.34 -1.52 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.57 7.62 -51.93 -0.40 0.17 16 33 H 0.06 0.44 6.46 -51.93 -0.34 0.10 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.41 3.60 8.07 -40.82 -0.33 3.27 16 42 H 0.41 5.12 8.30 -40.82 -0.34 4.78 16 43 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.13 2.90 5.63 -52.49 -0.30 2.60 16 47 H 0.13 2.38 6.22 -52.48 -0.33 2.05 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -31.72 391.68 -7.07 -38.79 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.80 Total: 9.15 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.77 Total: -8.59 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.46 Total: -40.19 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.17 Total: -20.43 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.72 -7.07 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319434714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.324 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds