Wall clock time and date at job start Tue Mar 31 2020 17:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 C 1.53007 * 109.46940 * 119.99611 * 2 1 3 5 5 C 1.52998 * 109.47135 * 174.99846 * 4 2 1 6 6 H 1.09006 * 109.46941 * 55.00202 * 5 4 2 7 7 C 1.53000 * 109.47019 * 175.00015 * 5 4 2 8 8 N 1.46504 * 109.47148 * 295.00496 * 5 4 2 9 9 C 1.34777 * 119.99872 * 155.00065 * 8 5 4 10 10 O 1.21358 * 119.99918 * 359.97438 * 9 8 5 11 11 C 1.49319 * 119.99666 * 179.71906 * 9 8 5 12 12 O 1.21388 * 119.99905 * 0.27957 * 11 9 8 13 13 N 1.34778 * 120.00009 * 180.27486 * 11 9 8 14 14 C 1.39743 * 119.99826 * 175.50033 * 13 11 9 15 15 C 1.38994 * 120.00204 * 214.86485 * 14 13 11 16 16 C 1.37966 * 119.99094 * 179.78979 * 15 14 13 17 17 C 1.38940 * 120.00387 * 0.49142 * 16 15 14 18 18 O 1.35765 * 119.99051 * 179.72534 * 17 16 15 19 19 C 1.34804 * 116.99560 * 185.36779 * 18 17 16 20 20 H 1.07997 * 120.00366 * 354.95577 * 19 18 17 21 21 C 1.38654 * 119.99457 * 174.96139 * 19 18 17 22 22 N 1.31557 * 120.00439 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99614 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47329 * 60.00319 * 23 21 19 25 25 H 1.48509 * 109.46994 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47444 * 299.99755 * 23 21 19 27 27 C 1.38931 * 120.01942 * 359.73775 * 17 16 15 28 28 C 1.37969 * 119.99989 * 0.02741 * 27 17 16 29 29 H 1.09005 * 109.47288 * 300.00422 * 1 2 3 30 30 H 1.09002 * 109.46692 * 60.00065 * 1 2 3 31 31 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47080 * 239.99514 * 2 1 3 33 33 H 1.09002 * 109.46747 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46691 * 299.99698 * 3 2 1 35 35 H 1.08996 * 109.47459 * 59.99746 * 3 2 1 36 36 H 1.09004 * 109.46739 * 54.99936 * 4 2 1 37 37 H 1.08994 * 109.46893 * 295.00092 * 4 2 1 38 38 H 1.08994 * 109.47290 * 299.99838 * 7 5 4 39 39 H 1.09000 * 109.46692 * 60.00153 * 7 5 4 40 40 H 1.09001 * 109.46964 * 179.97438 * 7 5 4 41 41 H 0.97005 * 119.99904 * 334.99454 * 8 5 4 42 42 H 0.96994 * 119.99818 * 355.49756 * 13 11 9 43 43 H 1.08004 * 120.00515 * 359.97438 * 15 14 13 44 44 H 1.07998 * 119.99795 * 180.22778 * 16 15 14 45 45 H 0.97004 * 120.00280 * 180.02562 * 22 21 19 46 46 H 1.07997 * 120.00472 * 180.02562 * 27 17 16 47 47 H 1.08008 * 120.00164 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1881 6 1 3.9954 0.1612 1.0528 7 6 4.0850 -1.4393 2.4920 8 7 3.9479 -1.6872 0.0627 9 6 5.1612 -1.5480 -0.5074 10 8 5.9361 -0.7130 -0.0889 11 6 5.5540 -2.4248 -1.6504 12 8 4.7787 -3.2597 -2.0693 13 7 6.7694 -2.2894 -2.2170 14 6 7.1733 -3.1708 -3.2233 15 6 8.5060 -3.5544 -3.3176 16 6 8.9037 -4.4280 -4.3085 17 6 7.9741 -4.9165 -5.2184 18 8 8.3669 -5.7718 -6.1968 19 6 7.4411 -6.1208 -7.1124 20 1 6.4195 -5.7885 -7.0012 21 6 7.8004 -6.9064 -8.1969 22 7 9.0449 -7.3109 -8.3326 23 14 6.5175 -7.3906 -9.4653 24 1 5.9453 -6.1672 -10.0826 25 1 7.1518 -8.2249 -10.5174 26 1 5.4356 -8.1641 -8.8048 27 6 6.6429 -4.5296 -5.1273 28 6 6.2437 -3.6597 -4.1336 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6053 -1.7198 1.2953 37 1 1.7516 -0.1582 2.1370 38 1 3.8000 -0.8023 3.3293 39 1 3.6544 -2.4315 2.6273 40 1 5.1713 -1.5180 2.4482 41 1 3.3284 -2.3544 -0.2720 42 1 7.3636 -1.5800 -1.9263 43 1 9.2295 -3.1708 -2.6134 44 1 9.9385 -4.7290 -4.3797 45 1 9.2964 -7.8602 -9.0915 46 1 5.9204 -4.9097 -5.8344 47 1 5.2088 -3.3586 -4.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319434714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:05 Heat of formation + Delta-G solvation = -104.855539 kcal Electronic energy + Delta-G solvation = -27947.121900 eV Core-core repulsion = 23901.547200 eV Total energy + Delta-G solvation = -4045.574700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.10591 -40.88201 -39.99519 -38.33527 -38.21031 -35.81863 -35.12584 -34.17390 -32.11156 -31.89185 -29.90520 -28.04578 -27.61979 -27.43292 -26.03836 -24.01520 -23.15096 -22.19101 -21.39520 -20.86438 -20.22784 -19.60391 -18.83802 -18.30493 -17.58632 -17.06435 -16.70327 -16.32224 -16.14674 -15.95489 -15.54801 -15.46458 -15.41537 -15.18850 -14.93466 -14.66836 -14.34787 -14.18466 -13.78763 -13.58755 -13.43184 -13.37133 -13.25961 -13.11183 -13.04090 -12.73854 -12.66410 -12.62910 -12.43900 -12.32699 -12.14983 -11.60263 -11.53845 -11.46809 -11.36187 -11.12194 -10.71069 -10.57712 -10.28661 -9.88135 -8.70415 -8.47367 -6.14230 0.06798 0.50621 0.70227 1.26432 1.35995 1.46174 1.51667 2.08155 2.18006 2.58504 2.79182 3.12724 3.34887 3.48689 3.66162 3.89602 4.00547 4.05819 4.08053 4.28828 4.35016 4.41225 4.44714 4.57459 4.64253 4.71461 4.76653 4.79808 4.84001 4.92169 5.00866 5.04388 5.06982 5.07579 5.09151 5.25837 5.27703 5.30870 5.34931 5.36185 5.47588 5.49224 5.50660 5.66161 5.89123 6.01022 6.10196 6.32331 6.71819 6.89848 6.97169 7.75066 8.74867 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002144 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.768705 B =13059.337157 C =14162.950613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.150 4.150 4 C -0.115 4.115 5 C 0.134 3.866 6 H 0.087 0.913 7 C -0.163 4.163 8 N -0.681 5.681 9 C 0.520 3.480 10 O -0.537 6.537 11 C 0.497 3.503 12 O -0.530 6.530 13 N -0.620 5.620 14 C 0.049 3.951 15 C -0.071 4.071 16 C -0.180 4.180 17 C 0.112 3.888 18 O -0.224 6.224 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.020 4.020 22 N -0.916 5.916 23 Si 1.016 2.984 24 H -0.258 1.258 25 H -0.270 1.270 26 H -0.259 1.259 27 C -0.228 4.228 28 C -0.068 4.068 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.417 0.583 42 H 0.429 0.571 43 H 0.164 0.836 44 H 0.130 0.870 45 H 0.274 0.726 46 H 0.122 0.878 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.241 16.093 21.055 30.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.207 4.207 4 C -0.153 4.153 5 C 0.031 3.969 6 H 0.105 0.895 7 C -0.221 4.221 8 N -0.334 5.334 9 C 0.300 3.700 10 O -0.414 6.414 11 C 0.279 3.721 12 O -0.407 6.407 13 N -0.267 5.267 14 C -0.045 4.045 15 C -0.091 4.091 16 C -0.199 4.199 17 C 0.061 3.939 18 O -0.130 6.130 19 C -0.491 4.491 20 H 0.118 0.882 21 C -0.218 4.218 22 N -0.554 5.554 23 Si 0.835 3.165 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.183 1.183 27 C -0.247 4.247 28 C -0.088 4.088 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.254 0.746 42 H 0.268 0.732 43 H 0.181 0.819 44 H 0.148 0.852 45 H 0.083 0.917 46 H 0.140 0.860 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.929 15.899 20.943 30.237 hybrid contribution -0.151 -0.509 -1.002 1.134 sum -15.080 15.391 19.942 29.359 Atomic orbital electron populations 1.21815 0.94261 1.02086 1.02098 1.21144 0.96441 0.96355 0.98088 1.21898 1.00527 0.96077 1.02207 1.21970 0.91616 1.02396 0.99324 1.21390 0.96506 0.94258 0.84698 0.89501 1.22177 1.00876 1.02226 0.96786 1.45939 1.15106 1.38740 1.33619 1.19667 0.83591 0.83531 0.83255 1.90756 1.51289 1.35651 1.63736 1.20541 0.82842 0.84444 0.84238 1.90773 1.50921 1.35929 1.63058 1.42794 1.17184 1.31679 1.35023 1.17372 0.93916 1.00341 0.92829 1.20778 0.94457 0.96120 0.97755 1.20304 0.99107 1.02861 0.97664 1.19971 0.93691 0.90070 0.90144 1.83939 1.39789 1.54808 1.34452 1.21763 0.91340 1.33335 1.02654 0.88230 1.26548 0.99793 0.96008 0.99454 1.70164 1.19051 1.35108 1.31087 0.84681 0.76487 0.78971 0.76313 1.18230 1.19489 1.18308 1.21104 0.95672 1.05003 1.02954 1.20935 0.99754 0.96180 0.91918 0.91705 0.93100 0.92358 0.92472 0.93545 0.93136 0.91410 0.90053 0.88116 0.89302 0.91546 0.93853 0.74577 0.73221 0.81859 0.85159 0.91746 0.85981 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 71.98 0.66 -0.67 16 2 C -0.10 -1.09 2.86 -10.79 -0.03 -1.12 16 3 C -0.15 -1.71 8.95 71.98 0.64 -1.06 16 4 C -0.12 -0.94 4.22 30.60 0.13 -0.81 16 5 C 0.13 1.69 2.44 44.99 0.11 1.80 16 6 H 0.09 1.31 5.78 -2.38 -0.01 1.30 16 7 C -0.16 -1.87 9.48 71.98 0.68 -1.18 16 8 N -0.68 -11.38 4.44 -443.99 -1.97 -13.35 16 9 C 0.52 11.67 7.85 87.23 0.68 12.36 16 10 O -0.54 -13.57 16.14 -3.27 -0.05 -13.62 16 11 C 0.50 13.40 7.73 87.23 0.67 14.07 16 12 O -0.53 -16.87 13.91 -3.37 -0.05 -16.92 16 13 N -0.62 -16.47 5.32 -304.75 -1.62 -18.09 16 14 C 0.05 1.62 6.30 38.24 0.24 1.86 16 15 C -0.07 -2.31 9.96 22.39 0.22 -2.09 16 16 C -0.18 -7.33 9.98 22.37 0.22 -7.11 16 17 C 0.11 5.55 6.65 22.60 0.15 5.70 16 18 O -0.22 -13.31 9.75 -22.65 -0.22 -13.54 16 19 C -0.41 -24.13 9.48 67.92 0.64 -23.48 16 20 H 0.10 5.36 5.19 -2.91 -0.02 5.35 16 21 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 22 N -0.92 -55.78 13.67 21.61 0.30 -55.49 16 23 Si 1.02 42.89 29.55 68.60 2.03 44.92 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 27 C -0.23 -10.28 9.16 22.37 0.20 -10.07 16 28 C -0.07 -2.63 8.69 22.39 0.19 -2.43 16 29 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.80 7.62 -2.39 -0.02 0.78 16 33 H 0.05 0.64 6.46 -2.39 -0.02 0.62 16 34 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.42 6.40 8.07 -92.70 -0.75 5.65 16 42 H 0.43 9.17 8.30 -92.71 -0.77 8.40 16 43 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 44 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 45 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 47 H 0.13 4.92 6.22 -2.91 -0.02 4.91 16 Total: -1.00 -72.57 391.68 3.81 -68.77 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.51 Total: 32.21 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 5.90 Total: -14.90 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -3.30 Total: -86.92 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.32 Total: -44.07 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.57 3.81 -68.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319434714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.088 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds