Wall clock time and date at job start Tue Mar 31 2020 18:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47263 * 2 1 4 4 C 1.53001 * 109.47264 * 119.99313 * 2 1 3 5 5 N 1.46902 * 109.46848 * 298.83351 * 4 2 1 6 6 C 1.47032 * 110.99261 * 170.73771 * 5 4 2 7 7 C 1.53092 * 109.25073 * 182.34801 * 6 5 4 8 8 O 1.43020 * 109.29754 * 303.21935 * 7 6 5 9 9 C 1.43014 * 113.73783 * 58.64453 * 8 7 6 10 10 C 1.47010 * 110.99963 * 294.41503 * 5 4 2 11 11 C 1.50696 * 109.47363 * 239.99565 * 2 1 3 12 12 O 1.21293 * 119.99867 * 240.00095 * 11 2 1 13 13 N 1.34781 * 120.00089 * 59.99951 * 11 2 1 14 14 C 1.39922 * 120.00161 * 175.68926 * 13 11 2 15 15 C 1.38957 * 120.03836 * 214.89860 * 14 13 11 16 16 C 1.38161 * 120.06672 * 179.72602 * 15 14 13 17 17 C 1.38170 * 120.13539 * 0.54512 * 16 15 14 18 18 C 1.38898 * 120.07393 * 359.72447 * 17 16 15 19 19 O 1.35753 * 120.03655 * 179.97438 * 18 17 16 20 20 C 1.34837 * 116.99661 * 5.93395 * 19 18 17 21 21 H 1.07994 * 119.99960 * 5.52278 * 20 19 18 22 22 C 1.38651 * 119.99916 * 185.53645 * 20 19 18 23 23 N 1.31560 * 120.00243 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99960 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47488 * 89.99679 * 24 22 20 26 26 H 1.48508 * 109.46872 * 209.99461 * 24 22 20 27 27 H 1.48500 * 109.46942 * 329.99260 * 24 22 20 28 28 C 1.38717 * 120.03423 * 35.16636 * 14 13 11 29 29 H 1.09003 * 109.46664 * 64.99146 * 1 2 3 30 30 H 1.09001 * 109.46838 * 184.98881 * 1 2 3 31 31 H 1.09002 * 109.47253 * 304.99215 * 1 2 3 32 32 H 1.08992 * 109.47512 * 178.82986 * 4 2 1 33 33 H 1.09003 * 109.46857 * 58.82790 * 4 2 1 34 34 H 1.08999 * 109.47135 * 62.43956 * 6 5 4 35 35 H 1.08992 * 109.54250 * 302.30005 * 6 5 4 36 36 H 1.09001 * 109.50897 * 183.26530 * 7 6 5 37 37 H 1.09000 * 109.50882 * 63.17465 * 7 6 5 38 38 H 1.09001 * 109.50185 * 61.27359 * 9 8 7 39 39 H 1.09007 * 109.50422 * 181.35255 * 9 8 7 40 40 H 1.09004 * 109.50728 * 57.67664 * 10 5 4 41 41 H 1.09003 * 109.50929 * 297.54650 * 10 5 4 42 42 H 0.96993 * 119.99862 * 355.69358 * 13 11 2 43 43 H 1.08003 * 119.96482 * 359.96983 * 15 14 13 44 44 H 1.07994 * 119.93090 * 180.25208 * 16 15 14 45 45 H 1.08002 * 119.96016 * 179.74956 * 17 16 15 46 46 H 0.96991 * 120.00457 * 180.02562 * 23 22 20 47 47 H 1.08000 * 120.06825 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.5735 -0.0123 2.4485 6 6 1.8549 -0.7911 3.6635 7 6 1.3015 -0.0452 4.8805 8 8 1.8726 1.2651 4.9317 9 6 1.6167 2.0507 3.7644 10 6 2.1741 1.3266 2.5361 11 6 2.0324 -0.7105 -1.2304 12 8 2.7297 -1.6966 -1.1189 13 7 1.7068 -0.2501 -2.4546 14 6 2.2459 -0.8547 -3.5955 15 6 2.5524 -0.0853 -4.7114 16 6 3.0899 -0.6808 -5.8362 17 6 3.3139 -2.0440 -5.8596 18 6 3.0044 -2.8193 -4.7495 19 8 3.2243 -4.1587 -4.7734 20 6 3.8574 -4.6558 -5.8552 21 1 4.2438 -3.9866 -6.6096 22 6 4.0122 -6.0261 -5.9990 23 7 3.5418 -6.8414 -5.0798 24 14 4.8888 -6.7148 -7.4979 25 1 6.3413 -6.8311 -7.2120 26 1 4.3388 -8.0561 -7.8201 27 1 4.6829 -5.8048 -8.6532 28 6 2.4696 -2.2235 -3.6160 29 1 -0.3633 0.4345 -0.9314 30 1 -0.3633 -1.0238 0.0894 31 1 -0.3634 0.5893 0.8419 32 1 3.1298 -0.7393 1.2389 33 1 1.6596 -1.7425 1.2600 34 1 2.9320 -0.9173 3.7728 35 1 1.3789 -1.7686 3.5884 36 1 1.5584 -0.5899 5.7891 37 1 0.2175 0.0334 4.7974 38 1 0.5419 2.1901 3.6481 39 1 2.1008 3.0220 3.8661 40 1 1.9312 1.8941 1.6377 41 1 3.2564 1.2348 2.6278 42 1 1.0989 0.5003 -2.5446 43 1 2.3739 0.9798 -4.6978 44 1 3.3311 -0.0802 -6.7007 45 1 3.7304 -2.5071 -6.7419 46 1 3.6504 -7.7999 -5.1802 47 1 2.2286 -2.8242 -2.7514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433617888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:05 Heat of formation + Delta-G solvation = -71.325646 kcal Electronic energy + Delta-G solvation = -28393.066025 eV Core-core repulsion = 24348.945289 eV Total energy + Delta-G solvation = -4044.120735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52157 -39.74229 -38.66305 -36.85074 -36.19950 -34.19289 -33.18774 -32.23512 -31.50202 -29.49459 -28.61716 -27.96816 -25.52356 -25.24888 -24.38869 -23.39192 -21.88655 -21.20467 -20.62163 -19.61580 -18.24462 -17.64358 -17.09345 -16.48000 -16.29435 -15.78360 -15.68641 -15.40686 -15.17967 -15.05844 -14.88454 -14.35989 -14.26094 -14.08758 -13.68291 -13.47782 -13.45142 -12.91077 -12.79953 -12.52241 -12.39386 -12.27360 -11.92995 -11.72441 -11.72146 -11.52857 -11.46982 -11.20882 -11.06307 -11.01041 -10.82694 -10.72786 -10.45764 -10.01332 -9.75984 -9.66308 -9.17066 -8.80479 -8.71384 -7.69735 -7.18562 -6.41655 -4.00673 2.00173 2.34323 2.84778 3.05092 3.15023 3.16033 3.20235 3.49074 3.63235 3.99485 4.39638 4.54393 4.56850 4.60518 4.69114 4.80636 4.81611 4.89994 4.96699 5.05449 5.14354 5.21990 5.29375 5.35935 5.44720 5.46623 5.51283 5.52702 5.62379 5.64808 5.69974 5.82787 5.83779 6.04272 6.11177 6.23215 6.38885 6.59958 6.60826 6.70401 6.78808 6.88263 7.04289 7.09156 7.34445 7.48306 7.68976 7.80139 8.03272 8.34736 9.03328 9.74828 10.76354 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.002226 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.111468 B =12576.305205 C =13657.898620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.096 0.904 4 C 0.073 3.927 5 N -0.534 5.534 6 C 0.017 3.983 7 C 0.065 3.935 8 O -0.388 6.388 9 C 0.065 3.935 10 C 0.011 3.989 11 C 0.510 3.490 12 O -0.510 6.510 13 N -0.668 5.668 14 C 0.174 3.826 15 C -0.236 4.236 16 C -0.059 4.059 17 C -0.245 4.245 18 C 0.166 3.834 19 O -0.174 6.174 20 C -0.391 4.391 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.861 5.861 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.267 1.267 28 C -0.187 4.187 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.405 0.595 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.128 0.872 46 H 0.270 0.730 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 18.042 13.926 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 H 0.114 0.886 4 C -0.055 4.055 5 N -0.259 5.259 6 C -0.111 4.111 7 C -0.012 4.012 8 O -0.306 6.306 9 C -0.012 4.012 10 C -0.117 4.117 11 C 0.296 3.704 12 O -0.384 6.384 13 N -0.313 5.313 14 C 0.081 3.919 15 C -0.257 4.257 16 C -0.078 4.078 17 C -0.265 4.265 18 C 0.111 3.889 19 O -0.077 6.077 20 C -0.467 4.467 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.208 4.208 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.240 0.760 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.145 0.855 46 H 0.080 0.920 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.605 17.005 14.397 23.239 hybrid contribution 0.945 -0.116 -1.188 1.522 sum -5.660 16.889 13.209 22.175 Atomic orbital electron populations 1.21675 0.91917 1.03313 1.02258 1.21261 0.98611 1.00452 0.92262 0.88601 1.21903 0.98536 0.97870 0.87174 1.62183 1.58686 1.02756 1.02304 1.22782 1.00085 0.98009 0.90209 1.22668 0.97739 0.83280 0.97535 1.87988 1.76959 1.26034 1.39619 1.22656 1.00452 0.94062 0.84061 1.22877 0.97787 0.91269 0.99794 1.20673 0.80372 0.84942 0.84418 1.90798 1.36503 1.24796 1.86291 1.43377 1.47738 1.35515 1.04652 1.17196 0.97773 0.91027 0.85938 1.20268 1.12210 0.98158 0.95091 1.20505 0.96619 0.94149 0.96536 1.21185 1.10984 0.94147 1.00156 1.19165 0.91964 0.85357 0.92424 1.84008 1.66434 1.15539 1.41672 1.21335 1.34103 0.91267 1.00000 0.89041 1.25306 0.97511 0.94927 0.98841 1.70050 1.42697 1.03723 1.33099 0.85708 0.79122 0.78597 0.79954 1.19880 1.20271 1.19191 1.20156 1.09345 0.92630 0.98655 0.92694 0.91923 0.90500 0.93484 0.89358 0.93702 0.89269 0.88448 0.92196 0.92236 0.88549 0.89397 0.93753 0.75978 0.87437 0.87064 0.85466 0.92021 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.92 37.16 0.33 -0.80 16 2 C -0.10 -1.05 2.59 -91.77 -0.24 -1.29 16 3 H 0.10 0.78 6.44 -51.93 -0.33 0.45 16 4 C 0.07 0.80 3.68 -3.82 -0.01 0.78 16 5 N -0.53 -4.78 4.11 -234.30 -0.96 -5.75 16 6 C 0.02 0.15 5.65 -3.70 -0.02 0.13 16 7 C 0.06 0.49 7.01 37.21 0.26 0.75 16 8 O -0.39 -3.65 10.83 -35.23 -0.38 -4.03 16 9 C 0.06 0.47 7.01 37.21 0.26 0.73 16 10 C 0.01 0.09 5.43 -3.72 -0.02 0.07 16 11 C 0.51 7.58 7.00 -10.99 -0.08 7.50 16 12 O -0.51 -10.17 13.43 5.55 0.07 -10.10 16 13 N -0.67 -9.47 5.24 -9.88 -0.05 -9.52 16 14 C 0.17 3.24 6.29 -83.72 -0.53 2.71 16 15 C -0.24 -4.04 9.96 -39.34 -0.39 -4.43 16 16 C -0.06 -1.09 10.03 -39.63 -0.40 -1.48 16 17 C -0.24 -5.44 9.13 -39.36 -0.36 -5.80 16 18 C 0.17 4.21 6.64 -39.14 -0.26 3.95 16 19 O -0.17 -5.17 9.76 0.02 0.00 -5.17 16 20 C -0.39 -11.20 9.44 30.89 0.29 -10.91 16 21 H 0.09 2.41 5.30 -52.49 -0.28 2.13 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 24 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 C -0.19 -4.32 8.64 -39.21 -0.34 -4.66 16 29 H 0.05 0.39 7.34 -51.93 -0.38 0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.57 7.79 -51.93 -0.40 0.17 16 32 H 0.05 0.59 8.05 -51.93 -0.42 0.17 16 33 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.58 6.33 -51.93 -0.33 0.25 16 41 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.41 4.07 8.05 -40.82 -0.33 3.74 16 43 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.13 3.30 6.24 -52.49 -0.33 2.97 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -34.79 379.62 -8.34 -43.13 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.88 Total: 6.76 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -1.60 Total: -11.76 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.26 Total: -40.41 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.31 Total: -19.29 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.79 -8.34 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433617888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.200 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds