Wall clock time and date at job start Tue Mar 31 2020 18:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47263 * 2 1 4 4 C 1.53001 * 109.47264 * 119.99313 * 2 1 3 5 5 N 1.46902 * 109.46848 * 298.83351 * 4 2 1 6 6 C 1.47032 * 110.99261 * 170.73771 * 5 4 2 7 7 C 1.53092 * 109.25073 * 182.34801 * 6 5 4 8 8 O 1.43020 * 109.29754 * 303.21935 * 7 6 5 9 9 C 1.43014 * 113.73783 * 58.64453 * 8 7 6 10 10 C 1.47010 * 110.99963 * 294.41503 * 5 4 2 11 11 C 1.50696 * 109.47363 * 239.99565 * 2 1 3 12 12 O 1.21293 * 119.99867 * 240.00095 * 11 2 1 13 13 N 1.34781 * 120.00089 * 59.99951 * 11 2 1 14 14 C 1.39922 * 120.00161 * 175.68926 * 13 11 2 15 15 C 1.38957 * 120.03836 * 214.89860 * 14 13 11 16 16 C 1.38161 * 120.06672 * 179.72602 * 15 14 13 17 17 C 1.38170 * 120.13539 * 0.54512 * 16 15 14 18 18 C 1.38898 * 120.07393 * 359.72447 * 17 16 15 19 19 O 1.35753 * 120.03655 * 179.97438 * 18 17 16 20 20 C 1.34837 * 116.99661 * 5.93395 * 19 18 17 21 21 H 1.07994 * 119.99960 * 5.52278 * 20 19 18 22 22 C 1.38651 * 119.99916 * 185.53645 * 20 19 18 23 23 N 1.31560 * 120.00243 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99960 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47488 * 89.99679 * 24 22 20 26 26 H 1.48508 * 109.46872 * 209.99461 * 24 22 20 27 27 H 1.48500 * 109.46942 * 329.99260 * 24 22 20 28 28 C 1.38717 * 120.03423 * 35.16636 * 14 13 11 29 29 H 1.09003 * 109.46664 * 64.99146 * 1 2 3 30 30 H 1.09001 * 109.46838 * 184.98881 * 1 2 3 31 31 H 1.09002 * 109.47253 * 304.99215 * 1 2 3 32 32 H 1.08992 * 109.47512 * 178.82986 * 4 2 1 33 33 H 1.09003 * 109.46857 * 58.82790 * 4 2 1 34 34 H 1.08999 * 109.47135 * 62.43956 * 6 5 4 35 35 H 1.08992 * 109.54250 * 302.30005 * 6 5 4 36 36 H 1.09001 * 109.50897 * 183.26530 * 7 6 5 37 37 H 1.09000 * 109.50882 * 63.17465 * 7 6 5 38 38 H 1.09001 * 109.50185 * 61.27359 * 9 8 7 39 39 H 1.09007 * 109.50422 * 181.35255 * 9 8 7 40 40 H 1.09004 * 109.50728 * 57.67664 * 10 5 4 41 41 H 1.09003 * 109.50929 * 297.54650 * 10 5 4 42 42 H 0.96993 * 119.99862 * 355.69358 * 13 11 2 43 43 H 1.08003 * 119.96482 * 359.96983 * 15 14 13 44 44 H 1.07994 * 119.93090 * 180.25208 * 16 15 14 45 45 H 1.08002 * 119.96016 * 179.74956 * 17 16 15 46 46 H 0.96991 * 120.00457 * 180.02562 * 23 22 20 47 47 H 1.08000 * 120.06825 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.5735 -0.0123 2.4485 6 6 1.8549 -0.7911 3.6635 7 6 1.3015 -0.0452 4.8805 8 8 1.8726 1.2651 4.9317 9 6 1.6167 2.0507 3.7644 10 6 2.1741 1.3266 2.5361 11 6 2.0324 -0.7105 -1.2304 12 8 2.7297 -1.6966 -1.1189 13 7 1.7068 -0.2501 -2.4546 14 6 2.2459 -0.8547 -3.5955 15 6 2.5524 -0.0853 -4.7114 16 6 3.0899 -0.6808 -5.8362 17 6 3.3139 -2.0440 -5.8596 18 6 3.0044 -2.8193 -4.7495 19 8 3.2243 -4.1587 -4.7734 20 6 3.8574 -4.6558 -5.8552 21 1 4.2438 -3.9866 -6.6096 22 6 4.0122 -6.0261 -5.9990 23 7 3.5418 -6.8414 -5.0798 24 14 4.8888 -6.7148 -7.4979 25 1 6.3413 -6.8311 -7.2120 26 1 4.3388 -8.0561 -7.8201 27 1 4.6829 -5.8048 -8.6532 28 6 2.4696 -2.2235 -3.6160 29 1 -0.3633 0.4345 -0.9314 30 1 -0.3633 -1.0238 0.0894 31 1 -0.3634 0.5893 0.8419 32 1 3.1298 -0.7393 1.2389 33 1 1.6596 -1.7425 1.2600 34 1 2.9320 -0.9173 3.7728 35 1 1.3789 -1.7686 3.5884 36 1 1.5584 -0.5899 5.7891 37 1 0.2175 0.0334 4.7974 38 1 0.5419 2.1901 3.6481 39 1 2.1008 3.0220 3.8661 40 1 1.9312 1.8941 1.6377 41 1 3.2564 1.2348 2.6278 42 1 1.0989 0.5003 -2.5446 43 1 2.3739 0.9798 -4.6978 44 1 3.3311 -0.0802 -6.7007 45 1 3.7304 -2.5071 -6.7419 46 1 3.6504 -7.7999 -5.1802 47 1 2.2286 -2.8242 -2.7514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433617888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:04 Heat of formation + Delta-G solvation = -97.718292 kcal Electronic energy + Delta-G solvation = -28394.210496 eV Core-core repulsion = 24348.945289 eV Total energy + Delta-G solvation = -4045.265206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77878 -40.68908 -40.23295 -38.35207 -37.22572 -35.63384 -34.31211 -34.06144 -32.12224 -31.16760 -30.07311 -28.85046 -27.36274 -26.26298 -25.02379 -24.63965 -23.37923 -22.69965 -21.44211 -20.73779 -19.99342 -19.13696 -18.44458 -17.37334 -17.13526 -17.05454 -16.83544 -16.69550 -16.20935 -16.15324 -15.99969 -15.88935 -15.55047 -15.48666 -15.25698 -14.72301 -14.40869 -14.30276 -14.14563 -13.68854 -13.58700 -13.26674 -13.13995 -13.09820 -12.92413 -12.69364 -12.60056 -12.36175 -12.31927 -12.26585 -12.13193 -11.82905 -11.48179 -11.45007 -11.23936 -10.78400 -10.70494 -10.65019 -9.49516 -9.35469 -8.89172 -8.48314 -6.17852 0.40710 0.69198 1.33100 1.42917 1.52051 1.58417 1.91795 2.17781 2.72767 2.81901 2.97915 3.15707 3.42860 3.55713 3.75570 3.90827 3.96125 4.02397 4.13598 4.19611 4.25290 4.27276 4.35208 4.36675 4.41640 4.58862 4.61816 4.68701 4.73495 4.74130 4.75577 4.82479 4.90863 4.95860 5.01745 5.03409 5.07201 5.11003 5.37289 5.40788 5.45547 5.62397 5.73438 5.79892 5.89616 6.01556 6.19556 6.19759 6.44918 6.95404 7.16524 7.78339 8.75714 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.002226 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.111468 B =12576.305205 C =13657.898620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 H 0.131 0.869 4 C 0.078 3.922 5 N -0.526 5.526 6 C 0.014 3.986 7 C 0.068 3.932 8 O -0.408 6.408 9 C 0.063 3.937 10 C 0.009 3.991 11 C 0.506 3.494 12 O -0.568 6.568 13 N -0.651 5.651 14 C 0.182 3.818 15 C -0.203 4.203 16 C -0.050 4.050 17 C -0.255 4.255 18 C 0.124 3.876 19 O -0.236 6.236 20 C -0.413 4.413 21 H 0.105 0.895 22 C -0.028 4.028 23 N -0.925 5.925 24 Si 1.024 2.976 25 H -0.264 1.264 26 H -0.271 1.271 27 H -0.248 1.248 28 C -0.214 4.214 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.029 0.971 42 H 0.431 0.569 43 H 0.166 0.834 44 H 0.160 0.840 45 H 0.122 0.878 46 H 0.272 0.728 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 22.879 12.837 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.109 4.109 3 H 0.148 0.852 4 C -0.051 4.051 5 N -0.251 5.251 6 C -0.114 4.114 7 C -0.009 4.009 8 O -0.327 6.327 9 C -0.013 4.013 10 C -0.119 4.119 11 C 0.294 3.706 12 O -0.445 6.445 13 N -0.298 5.298 14 C 0.087 3.913 15 C -0.223 4.223 16 C -0.068 4.068 17 C -0.275 4.275 18 C 0.073 3.927 19 O -0.143 6.143 20 C -0.489 4.489 21 H 0.123 0.877 22 C -0.225 4.225 23 N -0.563 5.563 24 Si 0.842 3.158 25 H -0.189 1.189 26 H -0.196 1.196 27 H -0.171 1.171 28 C -0.235 4.235 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.048 0.952 42 H 0.271 0.729 43 H 0.183 0.817 44 H 0.178 0.822 45 H 0.140 0.860 46 H 0.081 0.919 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.501 21.957 13.323 26.756 hybrid contribution 1.120 -1.271 -0.696 1.831 sum -6.381 20.686 12.627 25.062 Atomic orbital electron populations 1.21683 0.89941 1.02737 1.04222 1.21241 0.99835 1.00971 0.88837 0.85188 1.21751 0.96985 0.97443 0.88906 1.62235 1.58212 1.03162 1.01485 1.22849 0.99297 0.98536 0.90765 1.22726 0.98043 0.82761 0.97337 1.87964 1.77396 1.26661 1.40714 1.22819 1.01310 0.94307 0.82880 1.23002 0.96950 0.90648 1.01329 1.21636 0.79084 0.84113 0.85724 1.90805 1.39138 1.27537 1.87064 1.43298 1.47662 1.35670 1.03212 1.17356 0.96476 0.89423 0.87996 1.20913 1.07905 1.00570 0.92954 1.21054 0.94716 0.92488 0.98551 1.21333 1.11281 0.96021 0.98881 1.19718 0.93879 0.84602 0.94512 1.83967 1.69104 1.18092 1.43095 1.21889 1.34660 0.92173 1.00166 0.87735 1.26720 0.98305 0.94898 1.02545 1.70219 1.45815 1.04105 1.36183 0.84527 0.77687 0.77953 0.75618 1.18927 1.19565 1.17085 1.20185 1.11219 0.94855 0.97269 0.90578 0.93860 0.88597 0.95925 0.91604 0.95219 0.89117 0.87215 0.91288 0.91107 0.86817 0.87287 0.95227 0.72864 0.81660 0.82239 0.85999 0.91869 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.92 71.98 0.64 -1.15 16 2 C -0.09 -1.60 2.59 -11.54 -0.03 -1.63 16 3 H 0.13 1.56 6.44 -2.39 -0.02 1.54 16 4 C 0.08 1.72 3.68 86.30 0.32 2.04 16 5 N -0.53 -8.89 4.11 -895.20 -3.68 -12.57 16 6 C 0.01 0.24 5.65 86.31 0.49 0.72 16 7 C 0.07 0.96 7.01 72.01 0.50 1.46 16 8 O -0.41 -7.03 10.83 -148.98 -1.61 -8.64 16 9 C 0.06 0.76 7.01 72.01 0.50 1.26 16 10 C 0.01 0.12 5.43 86.31 0.47 0.59 16 11 C 0.51 14.74 7.00 87.66 0.61 15.36 16 12 O -0.57 -24.00 13.43 -3.07 -0.04 -24.04 16 13 N -0.65 -16.73 5.24 -303.55 -1.59 -18.32 16 14 C 0.18 6.46 6.29 38.14 0.24 6.70 16 15 C -0.20 -5.92 9.96 22.42 0.22 -5.69 16 16 C -0.05 -1.62 10.03 22.24 0.22 -1.40 16 17 C -0.26 -11.33 9.13 22.41 0.20 -11.13 16 18 C 0.12 6.65 6.64 22.56 0.15 6.80 16 19 O -0.24 -15.27 9.76 -22.84 -0.22 -15.49 16 20 C -0.41 -25.15 9.44 67.92 0.64 -24.51 16 21 H 0.11 5.76 5.30 -2.91 -0.02 5.74 16 22 C -0.03 -1.65 5.49 84.83 0.47 -1.18 16 23 N -0.92 -59.63 13.67 21.61 0.30 -59.33 16 24 Si 1.02 44.25 29.55 68.60 2.03 46.28 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 28 C -0.21 -10.39 8.64 22.51 0.19 -10.19 16 29 H 0.08 0.76 7.34 -2.39 -0.02 0.74 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 1.05 7.79 -2.39 -0.02 1.03 16 32 H 0.02 0.60 8.05 -2.39 -0.02 0.58 16 33 H 0.07 1.74 8.03 -2.39 -0.02 1.72 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.11 1.00 6.33 -2.39 -0.02 0.98 16 41 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.43 6.49 8.05 -92.71 -0.75 5.74 16 43 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 44 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 45 H 0.12 5.44 5.71 -2.91 -0.02 5.42 16 46 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 47 H 0.10 5.43 6.24 -2.91 -0.02 5.41 16 Total: -1.00 -87.20 379.62 1.27 -85.92 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.25 Total: 28.15 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 5.85 Total: -21.95 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -4.97 Total: -90.22 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.88 Total: -48.18 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -87.20 1.27 -85.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433617888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.794 kcal (2) G-P(sol) polarization free energy of solvation -87.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds