Wall clock time and date at job start Tue Mar 31 2020 17:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47244 * 2 1 4 4 C 1.50699 * 109.47112 * 119.99912 * 2 1 3 5 5 O 1.21280 * 120.00290 * 120.00091 * 4 2 1 6 6 N 1.34786 * 120.00040 * 300.00044 * 4 2 1 7 7 C 1.46493 * 120.00136 * 179.97438 * 6 4 2 8 8 C 1.52993 * 109.47381 * 180.02562 * 7 6 4 9 9 H 1.09002 * 110.28832 * 57.86867 * 8 7 6 10 10 C 1.54555 * 110.32555 * 179.97438 * 8 7 6 11 11 C 1.54774 * 104.07821 * 142.58952 * 10 8 7 12 12 C 1.53348 * 103.67263 * 359.14144 * 11 10 8 13 13 C 1.52303 * 116.13344 * 108.91148 * 12 11 10 14 14 N 1.47284 * 87.68708 * 91.18103 * 13 12 11 15 15 C 1.36942 * 135.92786 * 206.12790 * 14 13 12 16 16 H 1.08003 * 120.00136 * 6.79529 * 15 14 13 17 17 C 1.38804 * 119.99713 * 186.79235 * 15 14 13 18 18 N 1.31621 * 119.99893 * 172.37074 * 17 15 14 19 19 Si 1.86794 * 120.00271 * 352.37001 * 17 15 14 20 20 H 1.48509 * 109.47067 * 175.35403 * 19 17 15 21 21 H 1.48499 * 109.47130 * 55.35383 * 19 17 15 22 22 H 1.48497 * 109.47427 * 295.35226 * 19 17 15 23 23 C 1.47281 * 88.14217 * 26.38451 * 14 13 12 24 24 O 1.43112 * 106.44597 * 337.44794 * 12 11 10 25 25 C 1.50700 * 109.47233 * 240.00017 * 2 1 3 26 26 C 1.34514 * 125.78818 * 119.71743 * 25 2 1 27 27 C 1.41388 * 106.83808 * 179.88926 * 26 25 2 28 28 C 1.34516 * 106.83817 * 0.36896 * 27 26 25 29 29 O 1.34301 * 108.42347 * 359.77155 * 28 27 26 30 30 H 1.09002 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47138 * 300.00156 * 1 2 3 32 32 H 1.08997 * 109.47057 * 60.00109 * 1 2 3 33 33 H 0.96996 * 119.99543 * 0.02562 * 6 4 2 34 34 H 1.08995 * 109.47173 * 59.99497 * 7 6 4 35 35 H 1.09007 * 109.46933 * 300.00388 * 7 6 4 36 36 H 1.08995 * 110.50909 * 23.94406 * 10 8 7 37 37 H 1.08998 * 110.62597 * 261.29094 * 10 8 7 38 38 H 1.08997 * 110.58309 * 240.59490 * 11 10 8 39 39 H 1.09000 * 110.71110 * 117.74543 * 11 10 8 40 40 H 1.09003 * 113.51527 * 336.47994 * 13 12 11 41 41 H 1.08998 * 113.58332 * 205.89684 * 13 12 11 42 42 H 0.97008 * 119.99965 * 4.91436 * 18 17 15 43 43 H 1.08999 * 113.51942 * 88.32370 * 23 14 13 44 44 H 1.09003 * 113.51069 * 218.91606 * 23 14 13 45 45 H 1.07994 * 126.58044 * 0.02740 * 26 25 2 46 46 H 1.07999 * 126.57715 * 180.11944 * 27 26 25 47 47 H 1.08002 * 125.78609 * 179.79153 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4547 7 6 2.1945 -0.9408 3.6508 8 6 1.6842 -0.2199 4.9000 9 1 0.5949 -0.1790 4.8943 10 6 2.1874 -0.9337 6.1751 11 6 2.4868 0.2219 7.1602 12 6 2.1500 1.4820 6.3538 13 6 0.8957 2.2345 6.7780 14 7 1.7504 3.0355 7.6709 15 6 1.5743 3.7349 8.8350 16 1 0.6310 3.6835 9.3585 17 6 2.6082 4.5097 9.3423 18 7 2.3945 5.2980 10.3744 19 14 4.3028 4.4337 8.5602 20 1 5.1926 5.4302 9.2089 21 1 4.1932 4.7375 7.1108 22 1 4.8701 3.0731 8.7392 23 6 2.8756 2.7612 6.7611 24 8 2.2370 1.1149 4.9733 25 6 2.0324 -0.7104 -1.2305 26 6 2.8046 -0.1704 -2.1904 27 6 3.0379 -1.1848 -3.1473 28 6 2.3875 -2.2816 -2.7189 29 8 1.7803 -1.9884 -1.5574 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.1488 0.5385 2.5436 34 1 3.2845 -0.9413 3.6509 35 1 1.8308 -1.9683 3.6506 36 1 3.0946 -1.4995 5.9631 37 1 1.4153 -1.5889 6.5784 38 1 3.5388 0.2193 7.4455 39 1 1.8512 0.1505 8.0428 40 1 0.1743 1.6131 7.3087 41 1 0.4423 2.8145 5.9742 42 1 1.5356 5.2850 10.8251 43 1 2.9673 3.4857 5.9519 44 1 3.8188 2.5825 7.2776 45 1 3.1769 0.8429 -2.2227 46 1 3.6224 -1.0949 -4.0509 47 1 2.3588 -3.2361 -3.2233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673539393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:32 Heat of formation + Delta-G solvation = -1.228821 kcal Electronic energy + Delta-G solvation = -28688.465319 eV Core-core repulsion = 24647.384211 eV Total energy + Delta-G solvation = -4041.081109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.80012 -40.45791 -39.76509 -37.03619 -34.77249 -34.46959 -33.06876 -32.36584 -32.05902 -29.67519 -28.74749 -27.17254 -25.67538 -25.04704 -23.67000 -21.99575 -21.61652 -21.37427 -21.22180 -19.99560 -19.17669 -17.94433 -17.49481 -17.19478 -16.64815 -16.17254 -16.00615 -15.82049 -15.34833 -15.03274 -14.84782 -14.51830 -14.07150 -13.73874 -13.64408 -13.35565 -13.14271 -13.04831 -13.02176 -12.87669 -12.69144 -12.42573 -12.03667 -12.00151 -11.90555 -11.58160 -11.57071 -11.30010 -11.07761 -10.71595 -10.47505 -10.36638 -10.13848 -9.99106 -9.73453 -9.30605 -9.25816 -8.99563 -8.91751 -8.69887 -7.21923 -6.37800 -3.29490 1.50141 2.36166 2.41170 2.73894 2.97690 3.38634 3.41920 3.61440 3.81377 4.17193 4.40348 4.52157 4.54917 4.57496 4.62993 4.70658 4.77517 4.84535 4.87840 4.93462 4.95816 5.12815 5.20330 5.29715 5.34134 5.37957 5.44130 5.55926 5.57859 5.63013 5.69445 5.74956 5.86030 5.88867 6.10808 6.12483 6.17003 6.21491 6.22518 6.26228 6.28521 6.32110 6.50111 6.93881 6.99989 7.19875 7.26300 7.98635 8.17408 8.91192 9.43349 10.27960 11.14828 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.002234 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.035604 B =12530.944621 C =12855.241623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 H 0.127 0.873 4 C 0.516 3.484 5 O -0.531 6.531 6 N -0.721 5.721 7 C 0.128 3.872 8 C 0.062 3.938 9 H 0.075 0.925 10 C -0.145 4.145 11 C -0.115 4.115 12 C 0.059 3.941 13 C 0.111 3.889 14 N -0.619 5.619 15 C -0.304 4.304 16 H 0.084 0.916 17 C -0.023 4.023 18 N -0.931 5.931 19 Si 1.068 2.932 20 H -0.294 1.294 21 H -0.285 1.285 22 H -0.293 1.293 23 C 0.115 3.885 24 O -0.354 6.354 25 C 0.013 3.987 26 C -0.207 4.207 27 C -0.216 4.216 28 C -0.039 4.039 29 O -0.161 6.161 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.261 0.739 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 -15.077 -23.748 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.052 4.052 3 H 0.145 0.855 4 C 0.301 3.699 5 O -0.406 6.406 6 N -0.373 5.373 7 C 0.005 3.995 8 C 0.004 3.996 9 H 0.093 0.907 10 C -0.184 4.184 11 C -0.152 4.152 12 C 0.019 3.981 13 C -0.016 4.016 14 N -0.350 5.350 15 C -0.430 4.430 16 H 0.102 0.898 17 C -0.222 4.222 18 N -0.573 5.573 19 Si 0.900 3.100 20 H -0.221 1.221 21 H -0.212 1.212 22 H -0.221 1.221 23 C -0.011 4.011 24 O -0.272 6.272 25 C -0.038 4.038 26 C -0.226 4.226 27 C -0.235 4.235 28 C -0.107 4.107 29 O -0.056 6.056 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.241 0.759 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.165 0.835 46 H 0.165 0.835 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.369 -15.074 -23.509 27.960 hybrid contribution -1.720 -0.206 -0.069 1.734 sum -3.090 -15.279 -23.578 28.266 Atomic orbital electron populations 1.21821 0.91201 1.03665 1.03614 1.19903 0.98270 0.99423 0.87559 0.85502 1.20349 0.80456 0.84752 0.84328 1.90742 1.37277 1.25991 1.86629 1.45866 1.53873 1.32337 1.05192 1.21498 1.00386 0.95509 0.82114 1.23205 0.97951 0.84207 0.94226 0.90697 1.22946 1.02126 0.98540 0.94741 1.22336 1.03083 0.91616 0.98196 1.23649 0.99353 0.94932 0.80195 1.22669 0.93572 0.92451 0.92907 1.45750 1.05353 1.61639 1.22219 1.20077 1.01634 1.24593 0.96708 0.89808 1.25748 1.03158 0.94037 0.99257 1.70931 1.27110 1.35943 1.23322 0.83728 0.75809 0.75225 0.75197 1.22083 1.21165 1.22084 1.22683 0.93427 0.91980 0.92973 1.88944 1.82530 1.29637 1.26125 1.21520 1.02033 0.82795 0.97415 1.21561 1.03646 1.01387 0.96048 1.21783 1.05683 0.93554 1.02478 1.24024 0.99097 1.00770 0.86827 1.84020 1.58985 1.27631 1.34952 0.91426 0.90828 0.90742 0.75874 0.90511 0.90187 0.90426 0.90279 0.90394 0.89639 0.93519 0.93803 0.92863 0.92828 0.92541 0.83453 0.83507 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.07 37.16 0.34 -0.60 16 2 C -0.03 -0.26 3.13 -92.92 -0.29 -0.55 16 3 H 0.13 0.82 8.10 -51.93 -0.42 0.40 16 4 C 0.52 5.94 7.15 -10.98 -0.08 5.86 16 5 O -0.53 -8.31 15.80 -1.23 -0.02 -8.33 16 6 N -0.72 -7.19 5.41 -60.30 -0.33 -7.52 16 7 C 0.13 1.37 5.29 -4.05 -0.02 1.35 16 8 C 0.06 0.71 3.35 -25.92 -0.09 0.62 16 9 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 10 C -0.15 -1.62 6.65 -24.98 -0.17 -1.78 16 11 C -0.11 -1.71 6.50 -25.62 -0.17 -1.88 16 12 C 0.06 1.02 1.39 -91.01 -0.13 0.90 16 13 C 0.11 2.13 8.18 -7.86 -0.06 2.07 16 14 N -0.62 -14.98 3.68 -184.90 -0.68 -15.66 16 15 C -0.30 -8.62 11.08 -15.06 -0.17 -8.79 16 16 H 0.08 2.49 8.05 -52.48 -0.42 2.07 16 17 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 18 N -0.93 -29.08 13.70 55.49 0.76 -28.32 16 19 Si 1.07 26.61 25.13 -169.99 -4.27 22.34 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.28 -6.67 6.10 56.52 0.34 -6.32 16 22 H -0.29 -6.86 6.63 56.52 0.37 -6.49 16 23 C 0.11 2.45 5.28 -7.71 -0.04 2.41 16 24 O -0.35 -5.33 11.12 -35.23 -0.39 -5.72 16 25 C 0.01 0.14 5.20 -35.62 -0.19 -0.04 16 26 C -0.21 -2.03 10.78 -39.70 -0.43 -2.46 16 27 C -0.22 -1.94 10.91 -39.70 -0.43 -2.38 16 28 C -0.04 -0.35 12.09 29.42 0.36 0.00 16 29 O -0.16 -1.89 10.35 -1.07 -0.01 -1.90 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.36 7.56 -51.93 -0.39 -0.03 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.41 3.33 7.89 -40.82 -0.32 3.00 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 36 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 39 H 0.08 1.34 7.92 -51.93 -0.41 0.92 16 40 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 43 H 0.05 1.16 7.67 -51.93 -0.40 0.76 16 44 H 0.06 1.24 4.69 -51.93 -0.24 0.99 16 45 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -35.80 382.43 -8.16 -43.96 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.32 Total: 1.43 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.66 Total: -6.05 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.25 Total: -51.50 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.42 Total: -15.94 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -4.27 Total: 22.34 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.80 -8.16 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673539393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.731 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds