Wall clock time and date at job start Tue Mar 31 2020 17:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47244 * 2 1 4 4 C 1.50699 * 109.47112 * 119.99912 * 2 1 3 5 5 O 1.21280 * 120.00290 * 120.00091 * 4 2 1 6 6 N 1.34786 * 120.00040 * 300.00044 * 4 2 1 7 7 C 1.46493 * 120.00136 * 179.97438 * 6 4 2 8 8 C 1.52993 * 109.47381 * 180.02562 * 7 6 4 9 9 H 1.09002 * 110.28832 * 57.86867 * 8 7 6 10 10 C 1.54555 * 110.32555 * 179.97438 * 8 7 6 11 11 C 1.54774 * 104.07821 * 142.58952 * 10 8 7 12 12 C 1.53348 * 103.67263 * 359.14144 * 11 10 8 13 13 C 1.52303 * 116.13344 * 108.91148 * 12 11 10 14 14 N 1.47284 * 87.68708 * 91.18103 * 13 12 11 15 15 C 1.36942 * 135.92786 * 206.12790 * 14 13 12 16 16 H 1.08003 * 120.00136 * 6.79529 * 15 14 13 17 17 C 1.38804 * 119.99713 * 186.79235 * 15 14 13 18 18 N 1.31621 * 119.99893 * 172.37074 * 17 15 14 19 19 Si 1.86794 * 120.00271 * 352.37001 * 17 15 14 20 20 H 1.48509 * 109.47067 * 175.35403 * 19 17 15 21 21 H 1.48499 * 109.47130 * 55.35383 * 19 17 15 22 22 H 1.48497 * 109.47427 * 295.35226 * 19 17 15 23 23 C 1.47281 * 88.14217 * 26.38451 * 14 13 12 24 24 O 1.43112 * 106.44597 * 337.44794 * 12 11 10 25 25 C 1.50700 * 109.47233 * 240.00017 * 2 1 3 26 26 C 1.34514 * 125.78818 * 119.71743 * 25 2 1 27 27 C 1.41388 * 106.83808 * 179.88926 * 26 25 2 28 28 C 1.34516 * 106.83817 * 0.36896 * 27 26 25 29 29 O 1.34301 * 108.42347 * 359.77155 * 28 27 26 30 30 H 1.09002 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47138 * 300.00156 * 1 2 3 32 32 H 1.08997 * 109.47057 * 60.00109 * 1 2 3 33 33 H 0.96996 * 119.99543 * 0.02562 * 6 4 2 34 34 H 1.08995 * 109.47173 * 59.99497 * 7 6 4 35 35 H 1.09007 * 109.46933 * 300.00388 * 7 6 4 36 36 H 1.08995 * 110.50909 * 23.94406 * 10 8 7 37 37 H 1.08998 * 110.62597 * 261.29094 * 10 8 7 38 38 H 1.08997 * 110.58309 * 240.59490 * 11 10 8 39 39 H 1.09000 * 110.71110 * 117.74543 * 11 10 8 40 40 H 1.09003 * 113.51527 * 336.47994 * 13 12 11 41 41 H 1.08998 * 113.58332 * 205.89684 * 13 12 11 42 42 H 0.97008 * 119.99965 * 4.91436 * 18 17 15 43 43 H 1.08999 * 113.51942 * 88.32370 * 23 14 13 44 44 H 1.09003 * 113.51069 * 218.91606 * 23 14 13 45 45 H 1.07994 * 126.58044 * 0.02740 * 26 25 2 46 46 H 1.07999 * 126.57715 * 180.11944 * 27 26 25 47 47 H 1.08002 * 125.78609 * 179.79153 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4547 7 6 2.1945 -0.9408 3.6508 8 6 1.6842 -0.2199 4.9000 9 1 0.5949 -0.1790 4.8943 10 6 2.1874 -0.9337 6.1751 11 6 2.4868 0.2219 7.1602 12 6 2.1500 1.4820 6.3538 13 6 0.8957 2.2345 6.7780 14 7 1.7504 3.0355 7.6709 15 6 1.5743 3.7349 8.8350 16 1 0.6310 3.6835 9.3585 17 6 2.6082 4.5097 9.3423 18 7 2.3945 5.2980 10.3744 19 14 4.3028 4.4337 8.5602 20 1 5.1926 5.4302 9.2089 21 1 4.1932 4.7375 7.1108 22 1 4.8701 3.0731 8.7392 23 6 2.8756 2.7612 6.7611 24 8 2.2370 1.1149 4.9733 25 6 2.0324 -0.7104 -1.2305 26 6 2.8046 -0.1704 -2.1904 27 6 3.0379 -1.1848 -3.1473 28 6 2.3875 -2.2816 -2.7189 29 8 1.7803 -1.9884 -1.5574 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.1488 0.5385 2.5436 34 1 3.2845 -0.9413 3.6509 35 1 1.8308 -1.9683 3.6506 36 1 3.0946 -1.4995 5.9631 37 1 1.4153 -1.5889 6.5784 38 1 3.5388 0.2193 7.4455 39 1 1.8512 0.1505 8.0428 40 1 0.1743 1.6131 7.3087 41 1 0.4423 2.8145 5.9742 42 1 1.5356 5.2850 10.8251 43 1 2.9673 3.4857 5.9519 44 1 3.8188 2.5825 7.2776 45 1 3.1769 0.8429 -2.2227 46 1 3.6224 -1.0949 -4.0509 47 1 2.3588 -3.2361 -3.2233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673539393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:31 Heat of formation + Delta-G solvation = -26.998784 kcal Electronic energy + Delta-G solvation = -28689.582789 eV Core-core repulsion = 24647.384211 eV Total energy + Delta-G solvation = -4042.198578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.49907 -41.71844 -40.73116 -38.42606 -35.76604 -35.21150 -34.46211 -33.75846 -33.12113 -30.90902 -29.53299 -28.71044 -27.27154 -25.88976 -24.68585 -23.31939 -22.68664 -22.30846 -22.06477 -20.82365 -20.69531 -19.50851 -18.69430 -17.97596 -17.64228 -17.39865 -17.04135 -16.77327 -16.44349 -16.22530 -16.19033 -15.51601 -15.20307 -15.15696 -14.82561 -14.58037 -14.46148 -14.09900 -13.71412 -13.69132 -13.50628 -13.39466 -13.26621 -13.14029 -12.80019 -12.68793 -12.64125 -12.55153 -12.45481 -12.22761 -12.04145 -11.65382 -11.39540 -11.23085 -11.02703 -10.93800 -10.78324 -10.47399 -10.14267 -9.38343 -9.24198 -8.67361 -5.50360 0.79971 1.38057 1.46249 1.55494 1.65314 1.69469 2.09479 2.20577 2.51002 2.60444 2.95331 3.23571 3.39368 3.54276 3.58431 3.67332 3.74518 3.96323 3.99715 4.11432 4.13047 4.22415 4.33642 4.36490 4.42492 4.47385 4.54833 4.62960 4.69237 4.74065 4.78739 4.82132 4.84512 4.94918 4.95618 5.00282 5.02568 5.11125 5.13159 5.14978 5.22393 5.26888 5.37656 5.63164 5.91574 5.96162 6.25081 6.47976 6.66283 7.17164 7.28664 8.21552 8.88143 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.002234 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.035604 B =12530.944621 C =12855.241623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 H 0.150 0.850 4 C 0.515 3.485 5 O -0.578 6.578 6 N -0.712 5.712 7 C 0.132 3.868 8 C 0.064 3.936 9 H 0.096 0.904 10 C -0.136 4.136 11 C -0.119 4.119 12 C 0.084 3.916 13 C 0.110 3.890 14 N -0.649 5.649 15 C -0.287 4.287 16 H 0.056 0.944 17 C -0.082 4.082 18 N -0.968 5.968 19 Si 1.104 2.896 20 H -0.304 1.304 21 H -0.263 1.263 22 H -0.271 1.271 23 C 0.102 3.898 24 O -0.360 6.360 25 C -0.010 4.010 26 C -0.219 4.219 27 C -0.228 4.228 28 C -0.049 4.049 29 O -0.186 6.186 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.417 0.583 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.248 0.752 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.163 0.837 46 H 0.168 0.832 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 -16.585 -26.094 31.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.048 4.048 3 H 0.168 0.832 4 C 0.301 3.699 5 O -0.457 6.457 6 N -0.364 5.364 7 C 0.009 3.991 8 C 0.007 3.993 9 H 0.113 0.887 10 C -0.174 4.174 11 C -0.157 4.157 12 C 0.043 3.957 13 C -0.015 4.015 14 N -0.379 5.379 15 C -0.414 4.414 16 H 0.074 0.926 17 C -0.274 4.274 18 N -0.613 5.613 19 Si 0.930 3.070 20 H -0.232 1.232 21 H -0.189 1.189 22 H -0.198 1.198 23 C -0.023 4.023 24 O -0.279 6.279 25 C -0.061 4.061 26 C -0.238 4.238 27 C -0.246 4.246 28 C -0.116 4.116 29 O -0.082 6.082 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.254 0.746 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.181 0.819 46 H 0.185 0.815 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.479 -16.603 -25.895 30.796 hybrid contribution -1.793 0.193 0.571 1.892 sum -3.272 -16.409 -25.324 30.352 Atomic orbital electron populations 1.21819 0.89537 1.03257 1.05121 1.20028 0.99555 0.99789 0.85439 0.83222 1.20840 0.79572 0.84157 0.85293 1.90718 1.39510 1.28156 1.87302 1.45822 1.53425 1.32420 1.04716 1.21434 0.99564 0.96100 0.82033 1.23403 0.98951 0.82360 0.94606 0.88655 1.22943 1.03658 0.97459 0.93291 1.22363 1.02704 0.92049 0.98552 1.23121 0.96445 0.94243 0.81897 1.22854 0.94408 0.92095 0.92181 1.45776 1.08356 1.61718 1.22093 1.19936 1.00094 1.23568 0.97828 0.92592 1.26974 1.06627 0.94280 0.99552 1.71028 1.26594 1.38524 1.25188 0.83310 0.72078 0.76029 0.75568 1.23156 1.18860 1.19772 1.22833 0.92836 0.94302 0.92282 1.88929 1.82906 1.31733 1.24284 1.21967 1.02869 0.82797 0.98442 1.21929 1.03318 1.02381 0.96135 1.22151 1.05926 0.93390 1.03180 1.24745 0.98481 1.02170 0.86195 1.84003 1.59777 1.28359 1.36048 0.92767 0.88954 0.89577 0.74618 0.91989 0.89019 0.89178 0.87795 0.90778 0.90469 0.92364 0.92811 0.94295 0.92855 0.92950 0.81896 0.81461 0.75289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.07 71.98 0.65 -0.85 16 2 C -0.03 -0.42 3.13 -12.29 -0.04 -0.46 16 3 H 0.15 1.54 8.10 -2.39 -0.02 1.52 16 4 C 0.51 11.01 7.15 87.66 0.63 11.64 16 5 O -0.58 -17.71 15.80 3.46 0.05 -17.66 16 6 N -0.71 -12.31 5.41 -463.07 -2.50 -14.81 16 7 C 0.13 2.44 5.29 86.38 0.46 2.90 16 8 C 0.06 1.21 3.35 31.12 0.10 1.32 16 9 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 10 C -0.14 -2.49 6.65 31.73 0.21 -2.28 16 11 C -0.12 -3.23 6.50 31.32 0.20 -3.03 16 12 C 0.08 2.67 1.39 -11.04 -0.02 2.66 16 13 C 0.11 4.00 8.18 83.48 0.68 4.68 16 14 N -0.65 -30.80 3.68 -740.40 -2.73 -33.52 16 15 C -0.29 -16.48 11.08 84.03 0.93 -15.54 16 16 H 0.06 3.44 8.05 -2.91 -0.02 3.42 16 17 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 18 N -0.97 -62.30 13.70 21.65 0.30 -62.00 16 19 Si 1.10 53.63 25.13 68.60 1.72 55.36 16 20 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 21 H -0.26 -11.70 6.10 99.48 0.61 -11.10 16 22 H -0.27 -12.06 6.63 99.48 0.66 -11.40 16 23 C 0.10 4.17 5.28 83.58 0.44 4.61 16 24 O -0.36 -9.61 11.12 -148.98 -1.66 -11.27 16 25 C -0.01 -0.21 5.20 24.83 0.13 -0.08 16 26 C -0.22 -4.01 10.78 22.19 0.24 -3.77 16 27 C -0.23 -3.79 10.91 22.19 0.24 -3.55 16 28 C -0.05 -0.83 12.09 66.97 0.81 -0.02 16 29 O -0.19 -4.26 10.35 4.03 0.04 -4.22 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.62 7.56 -2.39 -0.02 0.60 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.42 5.42 7.89 -92.71 -0.73 4.69 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.09 1.48 7.87 -2.39 -0.02 1.46 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 39 H 0.08 2.24 7.92 -2.39 -0.02 2.22 16 40 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.25 15.94 8.73 -92.70 -0.81 15.13 16 43 H 0.05 2.18 7.67 -2.39 -0.02 2.16 16 44 H 0.05 2.18 4.69 -2.39 -0.01 2.17 16 45 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 47 H 0.23 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -80.09 382.43 1.43 -78.66 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.06 Total: 15.67 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 6.14 Total: -6.20 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -4.93 Total: -110.34 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.56 Total: -33.15 kcal Atomic # 14 Polarization: 53.63 SS G_CDS: 1.72 Total: 55.36 kcal Total: -80.09 1.43 -78.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673539393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.660 kcal (2) G-P(sol) polarization free energy of solvation -80.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds