Wall clock time and date at job start Tue Mar 31 2020 18:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35654 * 116.99954 * 2 1 4 4 C 1.38712 * 120.14961 * 359.97438 * 3 2 1 5 5 C 1.38057 * 120.08343 * 180.02562 * 4 3 2 6 6 C 1.38547 * 120.39118 * 0.02640 * 5 4 3 7 7 C 1.37788 * 120.29944 * 359.69742 * 6 5 4 8 8 C 1.39713 * 119.90884 * 0.55206 * 7 6 5 9 9 C 1.47532 * 120.19201 * 179.74445 * 8 7 6 10 10 O 1.21588 * 120.00403 * 232.39047 * 9 8 7 11 11 N 1.34782 * 119.99649 * 52.39771 * 9 8 7 12 12 C 1.47145 * 120.98466 * 355.99944 * 11 9 8 13 13 C 1.53295 * 108.38260 * 129.44418 * 12 11 9 14 14 O 1.42961 * 109.22194 * 52.30421 * 13 12 11 15 15 C 1.42957 * 114.16773 * 297.41876 * 14 13 12 16 16 H 1.09004 * 109.55416 * 302.63222 * 15 14 13 17 17 C 1.53003 * 109.51487 * 182.50495 * 15 14 13 18 18 H 1.09001 * 109.47303 * 185.24846 * 17 15 14 19 19 C 1.52995 * 109.46959 * 305.25330 * 17 15 14 20 20 N 1.46501 * 109.46823 * 65.24936 * 17 15 14 21 21 C 1.36944 * 119.99810 * 154.72460 * 20 17 15 22 22 H 1.07999 * 119.99653 * 0.02562 * 21 20 17 23 23 C 1.38813 * 120.00044 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99592 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00125 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47286 * 89.99811 * 25 23 21 27 27 H 1.48494 * 109.46813 * 210.00037 * 25 23 21 28 28 H 1.48500 * 109.46881 * 329.99703 * 25 23 21 29 29 C 1.47157 * 120.97629 * 175.98132 * 11 9 8 30 30 H 1.08997 * 109.46926 * 299.99785 * 1 2 3 31 31 H 1.08998 * 109.46691 * 60.00087 * 1 2 3 32 32 H 1.08993 * 109.47035 * 179.97438 * 1 2 3 33 33 H 1.07995 * 119.95610 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.80159 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.85147 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.05049 * 180.29635 * 7 6 5 37 37 H 1.08999 * 109.68703 * 249.16998 * 12 11 9 38 38 H 1.09004 * 109.68149 * 9.72482 * 12 11 9 39 39 H 1.08996 * 109.51102 * 172.22804 * 13 12 11 40 40 H 1.09001 * 109.51425 * 292.32744 * 13 12 11 41 41 H 1.09002 * 109.47204 * 179.97438 * 19 17 15 42 42 H 1.08992 * 109.47328 * 300.00287 * 19 17 15 43 43 H 1.09003 * 109.47189 * 60.00073 * 19 17 15 44 44 H 0.97003 * 120.00657 * 335.01020 * 20 17 15 45 45 H 0.97003 * 119.99629 * 179.97438 * 24 23 21 46 46 H 1.09000 * 109.67903 * 110.83284 * 29 11 9 47 47 H 1.08996 * 109.68170 * 350.27536 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3740 -0.0005 5 6 1.9206 3.6034 -0.0011 6 6 3.3038 3.6837 -0.0016 7 6 4.0668 2.5364 0.0046 8 6 3.4442 1.2857 -0.0001 9 6 4.2551 0.0532 0.0009 10 8 4.0558 -0.8064 -0.8356 11 7 5.2168 -0.1199 0.9292 12 6 5.5355 0.9418 1.8969 13 6 5.5274 0.3322 3.3034 14 8 6.3745 -0.8192 3.3223 15 6 5.9492 -1.8730 2.4550 16 1 4.9345 -2.1734 2.7162 17 6 6.8909 -3.0696 2.6047 18 1 6.6228 -3.8362 1.8777 19 6 8.3322 -2.6178 2.3616 20 7 6.7727 -3.6176 3.9582 21 6 7.0797 -4.9311 4.1943 22 1 7.4093 -5.5629 3.3828 23 6 6.9671 -5.4506 5.4767 24 7 7.2617 -6.7131 5.7034 25 14 6.3963 -4.3581 6.8802 26 1 4.9170 -4.4265 6.9906 27 1 7.0095 -4.8230 8.1502 28 1 6.8086 -2.9562 6.6155 29 6 5.9789 -1.3765 1.0050 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2139 2.3195 -0.0005 34 1 1.3303 4.5078 -0.0011 35 1 3.7861 4.6501 -0.0025 36 1 5.1447 2.6038 0.0090 37 1 6.5218 1.3521 1.6803 38 1 4.7870 1.7318 1.8348 39 1 5.8947 1.0664 4.0204 40 1 4.5108 0.0416 3.5684 41 1 9.0032 -3.4701 2.4687 42 1 8.4202 -2.2099 1.3547 43 1 8.6003 -1.8512 3.0887 44 1 6.4730 -3.0512 4.6865 45 1 7.1835 -7.0760 6.5996 46 1 7.0098 -1.1996 0.6986 47 1 5.5240 -2.1216 0.3524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717616184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:56 Heat of formation + Delta-G solvation = -56.232336 kcal Electronic energy + Delta-G solvation = -29664.254127 eV Core-core repulsion = 25620.787887 eV Total energy + Delta-G solvation = -4043.466240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06494 -39.86606 -38.32590 -37.63566 -35.64466 -34.58599 -32.60040 -31.78408 -30.58760 -30.47256 -28.81340 -27.83476 -27.20611 -24.96201 -24.00781 -23.30144 -22.45791 -21.89317 -19.93017 -19.71724 -18.32071 -17.80117 -17.38739 -16.80428 -16.41758 -16.10461 -15.90861 -15.52327 -15.26594 -15.03513 -14.86880 -14.50915 -14.37511 -14.07140 -13.88637 -13.30114 -13.23650 -12.95630 -12.78588 -12.67688 -12.55131 -12.30996 -12.06765 -12.02356 -11.60486 -11.53018 -11.46495 -11.22724 -10.89983 -10.74299 -10.59690 -10.32559 -10.06386 -9.89491 -9.84405 -9.53689 -9.36438 -8.88868 -8.66113 -8.49672 -7.21706 -5.71968 -3.06779 0.61550 0.96986 2.54598 2.78275 2.88135 3.33961 3.42991 3.49031 3.50036 3.88327 4.16580 4.37621 4.48262 4.65002 4.66478 4.68003 4.80711 4.83741 4.87140 4.91413 5.02552 5.08527 5.10183 5.18452 5.26155 5.32393 5.43368 5.56868 5.60281 5.64890 5.71032 5.76366 5.79693 5.84248 5.94996 6.00193 6.16996 6.25253 6.33709 6.39264 6.52580 6.78669 6.95770 7.11043 7.25121 7.36725 8.04554 8.06618 8.47429 9.26836 9.99243 10.20426 11.46384 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.002978 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.820003 B = 9399.914657 C = 9707.164553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.298 6.298 3 C 0.175 3.825 4 C -0.214 4.214 5 C -0.060 4.060 6 C -0.164 4.164 7 C -0.053 4.053 8 C -0.161 4.161 9 C 0.569 3.431 10 O -0.522 6.522 11 N -0.609 5.609 12 C 0.067 3.933 13 C 0.045 3.955 14 O -0.362 6.362 15 C 0.072 3.928 16 H 0.064 0.936 17 C 0.190 3.810 18 H 0.069 0.931 19 C -0.162 4.162 20 N -0.744 5.744 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.882 3.118 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.273 1.273 29 C 0.085 3.915 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.038 0.962 43 H 0.055 0.945 44 H 0.366 0.634 45 H 0.259 0.741 46 H 0.083 0.917 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 25.756 -12.050 30.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.210 6.210 3 C 0.127 3.873 4 C -0.233 4.233 5 C -0.078 4.078 6 C -0.182 4.182 7 C -0.071 4.071 8 C -0.165 4.165 9 C 0.357 3.643 10 O -0.398 6.398 11 N -0.343 5.343 12 C -0.056 4.056 13 C -0.033 4.033 14 O -0.281 6.281 15 C 0.012 3.988 16 H 0.082 0.918 17 C 0.080 3.920 18 H 0.087 0.913 19 C -0.222 4.222 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.109 0.891 23 C -0.191 4.191 24 N -0.583 5.583 25 Si 0.712 3.288 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.199 1.199 29 C -0.037 4.037 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.199 0.801 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.694 24.791 -12.409 30.089 hybrid contribution -0.906 0.993 1.030 1.693 sum -12.600 25.783 -11.379 30.871 Atomic orbital electron populations 1.23159 0.77932 1.04613 1.01277 1.86214 1.21617 1.26009 1.87154 1.18956 0.90724 0.84929 0.92649 1.21237 1.00363 0.91994 1.09727 1.21106 0.94749 0.97051 0.94923 1.20998 0.93819 0.98416 1.04949 1.21177 1.00261 0.90358 0.95330 1.19204 0.90929 0.94366 1.11973 1.18017 0.79153 0.86123 0.81014 1.90803 1.67911 1.43844 1.37253 1.48071 1.36812 1.16828 1.32592 1.22687 1.02313 0.90846 0.89803 1.22917 0.95689 0.89305 0.95387 1.88071 1.50531 1.25145 1.64315 1.23030 0.99617 0.88362 0.87743 0.91779 1.20173 0.92194 0.90383 0.89225 0.91331 1.22375 0.99154 1.01483 0.99214 1.42710 1.81735 1.09952 1.04300 1.19089 1.37567 0.85057 0.95383 0.89140 1.24644 1.01589 0.95815 0.97075 1.69704 1.55080 1.12503 1.21014 0.86568 0.78549 0.80717 0.82978 1.21250 1.21830 1.19898 1.22469 0.96771 0.85972 0.98494 0.92444 0.92400 0.87762 0.84774 0.85287 0.85114 0.84641 0.90248 0.88617 0.87877 0.92944 0.92417 0.94290 0.92555 0.80099 0.93127 0.89893 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.75 9.65 -23.72 -0.23 -3.98 16 3 C 0.18 2.00 6.68 -38.69 -0.26 1.74 16 4 C -0.21 -1.74 9.03 -39.47 -0.36 -2.09 16 5 C -0.06 -0.39 10.03 -39.53 -0.40 -0.79 16 6 C -0.16 -1.10 10.02 -39.63 -0.40 -1.49 16 7 C -0.05 -0.45 7.43 -39.20 -0.29 -0.74 16 8 C -0.16 -1.92 4.94 -104.84 -0.52 -2.43 16 9 C 0.57 8.46 6.90 -12.47 -0.09 8.37 16 10 O -0.52 -9.71 16.18 0.23 0.00 -9.71 16 11 N -0.61 -8.18 3.02 -173.51 -0.52 -8.70 16 12 C 0.07 0.68 5.58 -3.54 -0.02 0.66 16 13 C 0.05 0.54 6.98 37.31 0.26 0.80 16 14 O -0.36 -5.88 9.24 -35.23 -0.33 -6.20 16 15 C 0.07 1.21 2.61 -26.58 -0.07 1.14 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 17 C 0.19 3.75 2.77 -67.93 -0.19 3.57 16 18 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 19 C -0.16 -2.94 9.06 37.15 0.34 -2.60 16 20 N -0.74 -18.13 4.91 -53.42 -0.26 -18.40 16 21 C -0.24 -6.90 10.41 -15.06 -0.16 -7.06 16 22 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 23 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 24 N -0.94 -29.81 13.97 55.49 0.78 -29.04 16 25 Si 0.88 22.68 27.73 -169.99 -4.71 17.97 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.27 -6.73 6.52 56.52 0.37 -6.36 16 29 C 0.09 1.26 5.81 -3.53 -0.02 1.24 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 35 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.14 0.94 7.24 -52.49 -0.38 0.56 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.81 4.88 -51.93 -0.25 0.55 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.58 6.42 -51.93 -0.33 0.25 16 43 H 0.06 1.05 7.55 -51.93 -0.39 0.65 16 44 H 0.37 8.98 5.45 -40.82 -0.22 8.75 16 45 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 46 H 0.08 1.15 6.27 -51.93 -0.33 0.82 16 47 H 0.10 1.62 7.11 -51.93 -0.37 1.25 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -36.68 374.98 -7.69 -44.36 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.80 Total: 6.53 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.27 Total: 1.52 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.01 Total: -56.13 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.55 Total: -19.89 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.68 -7.69 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717616184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.869 kcal (2) G-P(sol) polarization free energy of solvation -36.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds