Wall clock time and date at job start Tue Mar 31 2020 18:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35654 * 116.99954 * 2 1 4 4 C 1.38712 * 120.14961 * 359.97438 * 3 2 1 5 5 C 1.38057 * 120.08343 * 180.02562 * 4 3 2 6 6 C 1.38547 * 120.39118 * 0.02640 * 5 4 3 7 7 C 1.37788 * 120.29944 * 359.69742 * 6 5 4 8 8 C 1.39713 * 119.90884 * 0.55206 * 7 6 5 9 9 C 1.47532 * 120.19201 * 179.74445 * 8 7 6 10 10 O 1.21588 * 120.00403 * 232.39047 * 9 8 7 11 11 N 1.34782 * 119.99649 * 52.39771 * 9 8 7 12 12 C 1.47145 * 120.98466 * 355.99944 * 11 9 8 13 13 C 1.53295 * 108.38260 * 129.44418 * 12 11 9 14 14 O 1.42961 * 109.22194 * 52.30421 * 13 12 11 15 15 C 1.42957 * 114.16773 * 297.41876 * 14 13 12 16 16 H 1.09004 * 109.55416 * 302.63222 * 15 14 13 17 17 C 1.53003 * 109.51487 * 182.50495 * 15 14 13 18 18 H 1.09001 * 109.47303 * 185.24846 * 17 15 14 19 19 C 1.52995 * 109.46959 * 305.25330 * 17 15 14 20 20 N 1.46501 * 109.46823 * 65.24936 * 17 15 14 21 21 C 1.36944 * 119.99810 * 154.72460 * 20 17 15 22 22 H 1.07999 * 119.99653 * 0.02562 * 21 20 17 23 23 C 1.38813 * 120.00044 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99592 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00125 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47286 * 89.99811 * 25 23 21 27 27 H 1.48494 * 109.46813 * 210.00037 * 25 23 21 28 28 H 1.48500 * 109.46881 * 329.99703 * 25 23 21 29 29 C 1.47157 * 120.97629 * 175.98132 * 11 9 8 30 30 H 1.08997 * 109.46926 * 299.99785 * 1 2 3 31 31 H 1.08998 * 109.46691 * 60.00087 * 1 2 3 32 32 H 1.08993 * 109.47035 * 179.97438 * 1 2 3 33 33 H 1.07995 * 119.95610 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.80159 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.85147 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.05049 * 180.29635 * 7 6 5 37 37 H 1.08999 * 109.68703 * 249.16998 * 12 11 9 38 38 H 1.09004 * 109.68149 * 9.72482 * 12 11 9 39 39 H 1.08996 * 109.51102 * 172.22804 * 13 12 11 40 40 H 1.09001 * 109.51425 * 292.32744 * 13 12 11 41 41 H 1.09002 * 109.47204 * 179.97438 * 19 17 15 42 42 H 1.08992 * 109.47328 * 300.00287 * 19 17 15 43 43 H 1.09003 * 109.47189 * 60.00073 * 19 17 15 44 44 H 0.97003 * 120.00657 * 335.01020 * 20 17 15 45 45 H 0.97003 * 119.99629 * 179.97438 * 24 23 21 46 46 H 1.09000 * 109.67903 * 110.83284 * 29 11 9 47 47 H 1.08996 * 109.68170 * 350.27536 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3740 -0.0005 5 6 1.9206 3.6034 -0.0011 6 6 3.3038 3.6837 -0.0016 7 6 4.0668 2.5364 0.0046 8 6 3.4442 1.2857 -0.0001 9 6 4.2551 0.0532 0.0009 10 8 4.0558 -0.8064 -0.8356 11 7 5.2168 -0.1199 0.9292 12 6 5.5355 0.9418 1.8969 13 6 5.5274 0.3322 3.3034 14 8 6.3745 -0.8192 3.3223 15 6 5.9492 -1.8730 2.4550 16 1 4.9345 -2.1734 2.7162 17 6 6.8909 -3.0696 2.6047 18 1 6.6228 -3.8362 1.8777 19 6 8.3322 -2.6178 2.3616 20 7 6.7727 -3.6176 3.9582 21 6 7.0797 -4.9311 4.1943 22 1 7.4093 -5.5629 3.3828 23 6 6.9671 -5.4506 5.4767 24 7 7.2617 -6.7131 5.7034 25 14 6.3963 -4.3581 6.8802 26 1 4.9170 -4.4265 6.9906 27 1 7.0095 -4.8230 8.1502 28 1 6.8086 -2.9562 6.6155 29 6 5.9789 -1.3765 1.0050 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2139 2.3195 -0.0005 34 1 1.3303 4.5078 -0.0011 35 1 3.7861 4.6501 -0.0025 36 1 5.1447 2.6038 0.0090 37 1 6.5218 1.3521 1.6803 38 1 4.7870 1.7318 1.8348 39 1 5.8947 1.0664 4.0204 40 1 4.5108 0.0416 3.5684 41 1 9.0032 -3.4701 2.4687 42 1 8.4202 -2.2099 1.3547 43 1 8.6003 -1.8512 3.0887 44 1 6.4730 -3.0512 4.6865 45 1 7.1835 -7.0760 6.5996 46 1 7.0098 -1.1996 0.6986 47 1 5.5240 -2.1216 0.3524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717616184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:55 Heat of formation + Delta-G solvation = -82.577666 kcal Electronic energy + Delta-G solvation = -29665.396546 eV Core-core repulsion = 25620.787887 eV Total energy + Delta-G solvation = -4044.608659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94521 -40.81823 -39.48216 -38.33748 -37.27387 -35.78817 -34.40743 -32.83581 -31.96498 -31.17718 -30.23953 -28.74044 -28.11948 -26.45474 -24.95431 -24.78762 -23.16011 -23.06149 -21.41161 -20.75653 -19.79367 -19.04331 -18.40940 -17.84946 -17.35376 -17.07851 -16.81460 -16.64020 -16.46851 -16.21878 -15.97647 -15.67294 -15.51574 -15.19432 -14.82618 -14.64465 -14.50156 -14.31536 -14.20052 -13.90149 -13.65556 -13.34496 -13.13422 -13.00207 -12.93107 -12.61665 -12.49934 -12.39994 -12.14499 -12.11421 -12.08968 -11.83733 -11.76803 -11.61278 -11.24808 -10.99643 -10.91558 -10.02423 -9.65236 -9.33488 -9.27581 -8.02407 -5.35337 -0.03547 0.37179 1.37252 1.39538 1.48352 1.51181 1.81843 2.26888 2.48552 2.67579 2.72621 3.29757 3.34237 3.41217 3.81187 3.84506 3.88777 3.90080 3.97969 4.05148 4.20679 4.23613 4.29161 4.31343 4.33248 4.38123 4.44707 4.50037 4.57159 4.59948 4.65372 4.73558 4.77559 4.85575 4.91004 5.04186 5.16602 5.21146 5.28015 5.31458 5.45884 5.57984 5.74749 5.76369 6.14217 6.19217 6.23080 6.36062 6.99562 7.07422 7.83297 8.04129 9.19185 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.002978 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.820003 B = 9399.914657 C = 9707.164553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.148 3.852 4 C -0.215 4.215 5 C -0.052 4.052 6 C -0.155 4.155 7 C -0.053 4.053 8 C -0.192 4.192 9 C 0.565 3.435 10 O -0.576 6.576 11 N -0.608 5.608 12 C 0.070 3.930 13 C 0.038 3.962 14 O -0.379 6.379 15 C 0.089 3.911 16 H 0.043 0.957 17 C 0.181 3.819 18 H 0.058 0.942 19 C -0.149 4.149 20 N -0.747 5.747 21 C -0.228 4.228 22 H 0.059 0.941 23 C -0.064 4.064 24 N -0.984 5.984 25 Si 0.953 3.047 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.253 1.253 29 C 0.093 3.907 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.151 0.849 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.136 0.864 40 H 0.043 0.957 41 H 0.034 0.966 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.367 0.633 45 H 0.258 0.742 46 H 0.098 0.902 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.675 30.940 -11.792 35.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.101 3.899 4 C -0.234 4.234 5 C -0.070 4.070 6 C -0.173 4.173 7 C -0.071 4.071 8 C -0.196 4.196 9 C 0.355 3.645 10 O -0.455 6.455 11 N -0.341 5.341 12 C -0.052 4.052 13 C -0.039 4.039 14 O -0.298 6.298 15 C 0.030 3.970 16 H 0.061 0.939 17 C 0.072 3.928 18 H 0.076 0.924 19 C -0.208 4.208 20 N -0.391 5.391 21 C -0.359 4.359 22 H 0.077 0.923 23 C -0.255 4.255 24 N -0.635 5.635 25 Si 0.780 3.220 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.178 1.178 29 C -0.030 4.030 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.172 0.828 34 H 0.182 0.818 35 H 0.182 0.818 36 H 0.169 0.831 37 H 0.121 0.879 38 H 0.137 0.863 39 H 0.154 0.846 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.200 0.800 45 H 0.066 0.934 46 H 0.116 0.884 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.475 30.054 -12.168 34.741 hybrid contribution -0.711 -0.537 0.848 1.230 sum -13.186 29.516 -11.320 34.253 Atomic orbital electron populations 1.23375 0.76069 1.05304 1.02839 1.86150 1.23881 1.27583 1.87697 1.19311 0.90974 0.85570 0.94045 1.21525 1.01351 0.91478 1.09011 1.21595 0.95206 0.97568 0.92583 1.21419 0.93938 0.99014 1.02886 1.21393 1.01246 0.89587 0.94924 1.19212 0.91082 0.94063 1.15224 1.18627 0.78922 0.86712 0.80257 1.90758 1.69312 1.46010 1.39446 1.48163 1.36270 1.16809 1.32891 1.22906 1.04332 0.90210 0.87747 1.23243 0.94897 0.88423 0.97367 1.88021 1.51580 1.25997 1.64182 1.22557 0.97276 0.87961 0.89246 0.93852 1.20378 0.94225 0.91504 0.86671 0.92419 1.22187 0.96820 1.00554 1.01272 1.42700 1.81731 1.08426 1.06246 1.19052 1.35787 0.86528 0.94499 0.92301 1.25455 1.02743 0.97305 1.00011 1.69880 1.57336 1.14686 1.21572 0.85432 0.78002 0.79571 0.78996 1.20730 1.21994 1.17789 1.22231 0.97631 0.86681 0.96491 0.90723 0.90849 0.87691 0.82780 0.81811 0.81777 0.83117 0.87891 0.86319 0.84597 0.93817 0.94642 0.90908 0.92507 0.79956 0.93356 0.88406 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.81 9.65 -84.86 -0.82 -9.63 16 3 C 0.15 3.27 6.68 22.84 0.15 3.42 16 4 C -0.22 -2.91 9.03 22.34 0.20 -2.71 16 5 C -0.05 -0.45 10.03 22.30 0.22 -0.22 16 6 C -0.15 -1.35 10.02 22.24 0.22 -1.13 16 7 C -0.05 -0.75 7.43 22.52 0.17 -0.58 16 8 C -0.19 -4.38 4.94 -20.01 -0.10 -4.48 16 9 C 0.56 16.98 6.90 86.69 0.60 17.57 16 10 O -0.58 -22.56 16.18 0.84 0.01 -22.54 16 11 N -0.61 -15.86 3.02 -821.11 -2.48 -18.34 16 12 C 0.07 1.23 5.58 86.36 0.48 1.71 16 13 C 0.04 0.80 6.98 72.08 0.50 1.31 16 14 O -0.38 -11.60 9.24 -148.98 -1.38 -12.97 16 15 C 0.09 3.00 2.61 30.69 0.08 3.08 16 16 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 17 C 0.18 7.22 2.77 44.99 0.12 7.35 16 18 H 0.06 2.42 8.08 -2.39 -0.02 2.40 16 19 C -0.15 -5.29 9.06 71.98 0.65 -4.64 16 20 N -0.75 -36.79 4.91 -322.93 -1.58 -38.37 16 21 C -0.23 -13.43 10.41 84.03 0.87 -12.56 16 22 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 23 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 24 N -0.98 -64.72 13.97 21.65 0.30 -64.41 16 25 Si 0.95 47.35 27.73 68.60 1.90 49.25 16 26 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 27 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 28 H -0.25 -11.62 6.52 99.48 0.65 -10.97 16 29 C 0.09 2.74 5.81 86.35 0.50 3.24 16 30 H 0.07 0.78 7.66 -2.39 -0.02 0.77 16 31 H 0.07 0.79 7.66 -2.39 -0.02 0.78 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.15 1.32 6.30 -2.91 -0.02 1.30 16 34 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 35 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.15 1.54 7.24 -2.91 -0.02 1.52 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.12 1.59 4.88 -2.38 -0.01 1.58 16 39 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 2.07 6.42 -2.39 -0.02 2.06 16 43 H 0.06 2.02 7.55 -2.39 -0.02 2.00 16 44 H 0.37 17.75 5.45 -92.71 -0.51 17.25 16 45 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 46 H 0.10 2.57 6.27 -2.39 -0.01 2.55 16 47 H 0.08 2.77 7.11 -2.39 -0.02 2.75 16 Total: -1.00 -84.74 374.98 2.65 -82.09 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.43 Total: 25.61 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.27 Total: 9.32 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -3.76 Total: -121.13 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -2.18 Total: -45.14 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.90 Total: 49.25 kcal Total: -84.74 2.65 -82.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717616184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.486 kcal (2) G-P(sol) polarization free energy of solvation -84.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds