Wall clock time and date at job start Tue Mar 31 2020 18:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47243 * 2 1 4 4 N 1.46501 * 109.47181 * 240.00148 * 2 1 3 5 5 C 1.36935 * 120.00086 * 84.99702 * 4 2 1 6 6 H 1.08003 * 120.00179 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00008 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00399 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99964 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46875 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46712 * 120.00429 * 9 7 5 12 12 H 1.48492 * 109.47276 * 240.00410 * 9 7 5 13 13 C 1.53000 * 109.47248 * 120.00399 * 2 1 3 14 14 H 1.08999 * 109.47446 * 185.00253 * 13 2 1 15 15 C 1.52995 * 109.47146 * 64.99505 * 13 2 1 16 16 N 1.46506 * 109.46808 * 305.00048 * 13 2 1 17 17 C 1.34777 * 119.99873 * 205.00186 * 16 13 2 18 18 O 1.21592 * 119.99797 * 359.97438 * 17 16 13 19 19 C 1.47546 * 120.00035 * 179.97438 * 17 16 13 20 20 C 1.39911 * 120.31528 * 0.02562 * 19 17 16 21 21 C 1.37748 * 120.05026 * 179.97438 * 20 19 17 22 22 C 1.38641 * 120.43520 * 359.97075 * 21 20 19 23 23 C 1.38352 * 120.06139 * 0.02562 * 22 21 20 24 24 C 1.38778 * 120.14175 * 359.76205 * 23 22 21 25 25 O 1.36179 * 119.67334 * 179.82606 * 24 23 22 26 26 C 1.42918 * 116.12736 * 292.05597 * 25 24 23 27 27 C 1.52073 * 110.75518 * 84.35413 * 26 25 24 28 28 C 1.52054 * 112.37475 * 295.20465 * 27 26 25 29 29 O 1.36493 * 120.28382 * 180.02562 * 23 22 21 30 30 H 1.09004 * 109.47232 * 299.99889 * 1 2 3 31 31 H 1.09003 * 109.47083 * 59.99461 * 1 2 3 32 32 H 1.09003 * 109.47686 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00009 * 265.00126 * 4 2 1 34 34 H 0.96992 * 120.00236 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.46959 * 60.00507 * 15 13 2 36 36 H 1.09003 * 109.47335 * 180.02562 * 15 13 2 37 37 H 1.09002 * 109.47311 * 300.00221 * 15 13 2 38 38 H 0.96995 * 120.00050 * 24.72300 * 16 13 2 39 39 H 1.08001 * 119.97898 * 359.96866 * 20 19 17 40 40 H 1.07995 * 119.78420 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.96495 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.22530 * 324.03066 * 26 25 24 43 43 H 1.09000 * 109.19006 * 204.66024 * 26 25 24 44 44 H 1.09006 * 108.90022 * 174.45871 * 27 26 25 45 45 H 1.09001 * 108.82210 * 55.90496 * 27 26 25 46 46 H 1.09003 * 109.21875 * 304.46564 * 28 27 26 47 47 H 1.09000 * 109.18502 * 185.11133 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4500 9 14 2.7913 0.2704 -5.1180 10 1 2.3773 1.6828 -4.9205 11 1 4.2084 0.2275 -5.5598 12 1 1.9311 -0.3580 -6.1525 13 6 2.0400 -0.7213 1.2492 14 1 3.1263 -0.6444 1.2952 15 6 1.6351 -2.1955 1.1879 16 7 1.4558 -0.1037 2.4424 17 6 2.0912 -0.1939 3.6275 18 8 3.1491 -0.7882 3.7065 19 6 1.5032 0.4286 4.8291 20 6 0.2860 1.1135 4.7458 21 6 -0.2583 1.6921 5.8712 22 6 0.3920 1.6010 7.0922 23 6 1.5961 0.9263 7.1875 24 6 2.1543 0.3347 6.0630 25 8 3.3417 -0.3240 6.1670 26 6 4.4877 0.4842 6.4427 27 6 4.6238 0.7344 7.9365 28 6 3.4700 1.5530 8.4939 29 8 2.2400 0.8334 8.3874 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2494 -2.3957 -4.2418 35 1 2.0698 -2.6550 0.3001 36 1 1.9981 -2.7093 2.0780 37 1 0.5488 -2.2724 1.1420 38 1 0.6137 0.3735 2.3786 39 1 -0.2272 1.1887 3.7985 40 1 -1.1978 2.2201 5.8019 41 1 -0.0418 2.0571 7.9697 42 1 4.3860 1.4390 5.9269 43 1 5.3809 -0.0254 6.0814 44 1 5.5566 1.2672 8.1217 45 1 4.6575 -0.2253 8.4522 46 1 3.3893 2.4858 7.9357 47 1 3.6642 1.7782 9.5425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755260754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:41 Heat of formation + Delta-G solvation = -64.024259 kcal Electronic energy + Delta-G solvation = -29296.380026 eV Core-core repulsion = 25252.575903 eV Total energy + Delta-G solvation = -4043.804123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25874 -39.60800 -37.73856 -37.66998 -36.66767 -33.94777 -33.18545 -32.05713 -31.01136 -29.45273 -29.08590 -28.20699 -26.81860 -24.72592 -24.23339 -23.02103 -22.28028 -21.99664 -20.48374 -19.31519 -18.78681 -17.67566 -17.45390 -17.10325 -16.54718 -15.74315 -15.64350 -15.42657 -15.23651 -14.81708 -14.42463 -14.33191 -14.22754 -14.13261 -13.82721 -13.53450 -13.45870 -12.81144 -12.66241 -12.49707 -12.44178 -12.20086 -11.92043 -11.61440 -11.47300 -11.28510 -11.19766 -10.94897 -10.84419 -10.67065 -10.47423 -10.32449 -10.23633 -9.95880 -9.74535 -9.52705 -9.19094 -8.95362 -8.81804 -8.72437 -7.00944 -5.79008 -3.08563 0.49325 0.77146 2.67754 3.12309 3.31561 3.34635 3.42238 3.47789 3.49945 3.71123 4.32798 4.37329 4.52258 4.55622 4.60044 4.77853 4.78314 4.95343 4.96708 4.99595 5.04766 5.22635 5.35062 5.41936 5.48898 5.53780 5.62728 5.65680 5.69246 5.73774 5.85020 5.90332 5.95414 6.08259 6.15812 6.17640 6.30949 6.40506 6.49372 6.65562 6.71764 6.85342 6.94616 7.07704 7.33208 7.68133 7.71486 8.38786 8.42751 9.50775 10.06347 10.41199 11.43640 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021607 B = 0.002488 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.549024 B =11251.493427 C =11824.143172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.292 1.292 13 C 0.138 3.862 14 H 0.088 0.912 15 C -0.159 4.159 16 N -0.716 5.716 17 C 0.553 3.447 18 O -0.515 6.515 19 C -0.131 4.131 20 C -0.081 4.081 21 C -0.120 4.120 22 C -0.096 4.096 23 C 0.052 3.948 24 C 0.125 3.875 25 O -0.295 6.295 26 C 0.067 3.933 27 C -0.189 4.189 28 C 0.059 3.941 29 O -0.318 6.318 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.387 0.613 34 H 0.255 0.745 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.395 0.605 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 9.566 25.358 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.033 3.967 14 H 0.107 0.893 15 C -0.217 4.217 16 N -0.369 5.369 17 C 0.338 3.662 18 O -0.391 6.391 19 C -0.135 4.135 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.114 4.114 23 C 0.008 3.992 24 C 0.079 3.921 25 O -0.210 6.210 26 C -0.008 4.008 27 C -0.227 4.227 28 C -0.015 4.015 29 O -0.234 6.234 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.223 0.777 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.232 0.768 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.420 8.943 25.381 27.127 hybrid contribution -0.170 0.639 -1.002 1.200 sum -3.589 9.581 24.379 26.439 Atomic orbital electron populations 1.22542 0.99362 1.01331 0.99640 1.20358 0.92153 0.95563 0.86186 0.93086 1.42463 1.78191 1.10820 1.04812 1.19261 1.36762 0.93943 0.87128 0.91089 1.24750 1.01994 0.95999 0.98111 1.69666 1.50688 1.08664 1.28888 0.86117 0.77333 0.78752 0.83961 1.20578 1.21860 1.21875 1.21337 0.99041 0.92907 0.83407 0.89349 1.22140 1.01491 0.95783 1.02334 1.46180 1.25855 1.56666 1.08244 1.17932 0.84873 0.80567 0.82795 1.90826 1.21620 1.41549 1.85117 1.20217 0.97700 1.02599 0.92978 1.21354 0.93701 0.95377 0.99498 1.21007 1.00584 1.00610 0.91577 1.21257 0.94631 0.96904 0.98651 1.19102 0.94783 0.99942 0.85339 1.19188 0.88695 0.93369 0.90871 1.86407 1.12586 1.31901 1.90081 1.22588 0.88271 0.95816 0.94142 1.22535 0.99566 1.02899 0.97726 1.22666 0.82792 0.93553 1.02529 1.86389 1.36307 1.70955 1.29751 0.95020 0.92342 0.92713 0.77740 0.93472 0.90492 0.93000 0.92553 0.76820 0.84597 0.84381 0.84435 0.92644 0.87470 0.89088 0.89708 0.92404 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.01 37.16 0.33 -2.44 16 2 C 0.17 3.22 2.93 -67.93 -0.20 3.02 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 N -0.72 -17.55 5.03 -53.43 -0.27 -17.82 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 9 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C 0.14 2.41 2.62 -67.93 -0.18 2.24 16 14 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 15 C -0.16 -2.78 9.00 37.16 0.33 -2.44 16 16 N -0.72 -10.36 4.94 -54.84 -0.27 -10.63 16 17 C 0.55 8.77 7.73 -12.47 -0.10 8.67 16 18 O -0.52 -10.05 14.85 -16.48 -0.24 -10.30 16 19 C -0.13 -1.72 5.88 -104.88 -0.62 -2.33 16 20 C -0.08 -0.76 9.54 -39.13 -0.37 -1.14 16 21 C -0.12 -0.92 10.02 -39.61 -0.40 -1.32 16 22 C -0.10 -0.83 9.99 -39.39 -0.39 -1.22 16 23 C 0.05 0.60 5.72 -39.34 -0.23 0.37 16 24 C 0.13 1.69 5.75 -38.78 -0.22 1.47 16 25 O -0.29 -4.38 8.25 -49.12 -0.41 -4.78 16 26 C 0.07 0.72 6.52 36.69 0.24 0.96 16 27 C -0.19 -1.49 5.92 -27.68 -0.16 -1.66 16 28 C 0.06 0.46 6.51 36.68 0.24 0.70 16 29 O -0.32 -3.50 10.16 -36.81 -0.37 -3.87 16 30 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.92 6.57 -51.93 -0.34 0.58 16 33 H 0.39 10.01 5.77 -40.82 -0.24 9.78 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.08 1.48 6.29 -51.93 -0.33 1.16 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.91 6.57 -51.93 -0.34 0.56 16 38 H 0.40 4.61 4.62 -40.82 -0.19 4.43 16 39 H 0.14 0.99 6.42 -52.49 -0.34 0.65 16 40 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 43 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -34.14 374.91 -8.84 -42.98 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.66 Total: 11.01 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.97 Total: -2.25 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.18 Total: -55.59 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.02 Total: -18.95 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.14 -8.84 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755260754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.043 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds