Wall clock time and date at job start Tue Mar 31 2020 18:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47243 * 2 1 4 4 N 1.46501 * 109.47181 * 240.00148 * 2 1 3 5 5 C 1.36935 * 120.00086 * 84.99702 * 4 2 1 6 6 H 1.08003 * 120.00179 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00008 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00399 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99964 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46875 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46712 * 120.00429 * 9 7 5 12 12 H 1.48492 * 109.47276 * 240.00410 * 9 7 5 13 13 C 1.53000 * 109.47248 * 120.00399 * 2 1 3 14 14 H 1.08999 * 109.47446 * 185.00253 * 13 2 1 15 15 C 1.52995 * 109.47146 * 64.99505 * 13 2 1 16 16 N 1.46506 * 109.46808 * 305.00048 * 13 2 1 17 17 C 1.34777 * 119.99873 * 205.00186 * 16 13 2 18 18 O 1.21592 * 119.99797 * 359.97438 * 17 16 13 19 19 C 1.47546 * 120.00035 * 179.97438 * 17 16 13 20 20 C 1.39911 * 120.31528 * 0.02562 * 19 17 16 21 21 C 1.37748 * 120.05026 * 179.97438 * 20 19 17 22 22 C 1.38641 * 120.43520 * 359.97075 * 21 20 19 23 23 C 1.38352 * 120.06139 * 0.02562 * 22 21 20 24 24 C 1.38778 * 120.14175 * 359.76205 * 23 22 21 25 25 O 1.36179 * 119.67334 * 179.82606 * 24 23 22 26 26 C 1.42918 * 116.12736 * 292.05597 * 25 24 23 27 27 C 1.52073 * 110.75518 * 84.35413 * 26 25 24 28 28 C 1.52054 * 112.37475 * 295.20465 * 27 26 25 29 29 O 1.36493 * 120.28382 * 180.02562 * 23 22 21 30 30 H 1.09004 * 109.47232 * 299.99889 * 1 2 3 31 31 H 1.09003 * 109.47083 * 59.99461 * 1 2 3 32 32 H 1.09003 * 109.47686 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00009 * 265.00126 * 4 2 1 34 34 H 0.96992 * 120.00236 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.46959 * 60.00507 * 15 13 2 36 36 H 1.09003 * 109.47335 * 180.02562 * 15 13 2 37 37 H 1.09002 * 109.47311 * 300.00221 * 15 13 2 38 38 H 0.96995 * 120.00050 * 24.72300 * 16 13 2 39 39 H 1.08001 * 119.97898 * 359.96866 * 20 19 17 40 40 H 1.07995 * 119.78420 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.96495 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.22530 * 324.03066 * 26 25 24 43 43 H 1.09000 * 109.19006 * 204.66024 * 26 25 24 44 44 H 1.09006 * 108.90022 * 174.45871 * 27 26 25 45 45 H 1.09001 * 108.82210 * 55.90496 * 27 26 25 46 46 H 1.09003 * 109.21875 * 304.46564 * 28 27 26 47 47 H 1.09000 * 109.18502 * 185.11133 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4500 9 14 2.7913 0.2704 -5.1180 10 1 2.3773 1.6828 -4.9205 11 1 4.2084 0.2275 -5.5598 12 1 1.9311 -0.3580 -6.1525 13 6 2.0400 -0.7213 1.2492 14 1 3.1263 -0.6444 1.2952 15 6 1.6351 -2.1955 1.1879 16 7 1.4558 -0.1037 2.4424 17 6 2.0912 -0.1939 3.6275 18 8 3.1491 -0.7882 3.7065 19 6 1.5032 0.4286 4.8291 20 6 0.2860 1.1135 4.7458 21 6 -0.2583 1.6921 5.8712 22 6 0.3920 1.6010 7.0922 23 6 1.5961 0.9263 7.1875 24 6 2.1543 0.3347 6.0630 25 8 3.3417 -0.3240 6.1670 26 6 4.4877 0.4842 6.4427 27 6 4.6238 0.7344 7.9365 28 6 3.4700 1.5530 8.4939 29 8 2.2400 0.8334 8.3874 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2494 -2.3957 -4.2418 35 1 2.0698 -2.6550 0.3001 36 1 1.9981 -2.7093 2.0780 37 1 0.5488 -2.2724 1.1420 38 1 0.6137 0.3735 2.3786 39 1 -0.2272 1.1887 3.7985 40 1 -1.1978 2.2201 5.8019 41 1 -0.0418 2.0571 7.9697 42 1 4.3860 1.4390 5.9269 43 1 5.3809 -0.0254 6.0814 44 1 5.5566 1.2672 8.1217 45 1 4.6575 -0.2253 8.4522 46 1 3.3893 2.4858 7.9357 47 1 3.6642 1.7782 9.5425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755260754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:40 Heat of formation + Delta-G solvation = -86.532430 kcal Electronic energy + Delta-G solvation = -29297.356054 eV Core-core repulsion = 25252.575903 eV Total energy + Delta-G solvation = -4044.780151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10751 -40.79449 -38.70592 -38.56376 -37.99584 -35.61585 -34.00385 -33.57821 -32.18930 -30.65133 -30.14351 -29.79549 -27.56343 -26.18417 -25.70833 -24.41973 -23.01600 -22.83981 -21.61713 -20.72344 -19.79108 -19.39346 -18.48492 -18.06231 -17.50323 -16.80016 -16.64112 -16.55414 -16.34603 -16.05607 -15.87053 -15.66744 -15.32138 -15.14899 -15.05373 -14.77782 -14.55761 -14.17205 -13.93877 -13.50189 -13.41498 -13.17888 -13.06425 -13.00662 -12.89945 -12.82536 -12.64962 -12.19039 -12.07252 -12.03281 -11.91189 -11.66654 -11.59539 -11.39014 -11.27436 -10.96332 -10.69728 -10.20244 -9.88593 -9.57300 -9.03048 -7.93164 -5.22174 -0.34247 0.03533 1.48377 1.49331 1.59007 1.76776 2.02418 2.42597 2.48867 2.58654 2.85757 3.40836 3.56254 3.67397 3.74868 3.85533 3.91671 3.98098 4.05277 4.09489 4.15256 4.24472 4.29659 4.31994 4.33364 4.38505 4.54780 4.60174 4.69355 4.76560 4.79714 4.87071 4.96310 5.00445 5.04210 5.06809 5.17540 5.19807 5.24893 5.27383 5.48029 5.53594 5.56956 5.64554 6.11816 6.28882 6.50857 6.55850 7.23308 7.35335 8.09562 8.32558 9.30727 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021607 B = 0.002488 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.549024 B =11251.493427 C =11824.143172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 H 0.049 0.951 4 N -0.735 5.735 5 C -0.235 4.235 6 H 0.079 0.921 7 C -0.078 4.078 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.263 1.263 11 H -0.298 1.298 12 H -0.294 1.294 13 C 0.151 3.849 14 H 0.055 0.945 15 C -0.149 4.149 16 N -0.700 5.700 17 C 0.551 3.449 18 O -0.563 6.563 19 C -0.158 4.158 20 C -0.074 4.074 21 C -0.105 4.105 22 C -0.084 4.084 23 C 0.040 3.960 24 C 0.097 3.903 25 O -0.331 6.331 26 C 0.058 3.942 27 C -0.182 4.182 28 C 0.054 3.946 29 O -0.334 6.334 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.161 0.839 40 H 0.181 0.819 41 H 0.167 0.833 42 H 0.053 0.947 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 12.475 27.132 30.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.067 0.933 4 N -0.377 5.377 5 C -0.367 4.367 6 H 0.097 0.903 7 C -0.270 4.270 8 N -0.622 5.622 9 Si 0.802 3.198 10 H -0.188 1.188 11 H -0.225 1.225 12 H -0.221 1.221 13 C 0.046 3.954 14 H 0.073 0.927 15 C -0.208 4.208 16 N -0.355 5.355 17 C 0.339 3.661 18 O -0.442 6.442 19 C -0.162 4.162 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.004 4.004 24 C 0.051 3.949 25 O -0.248 6.248 26 C -0.016 4.016 27 C -0.219 4.219 28 C -0.020 4.020 29 O -0.251 6.251 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.252 0.748 39 H 0.179 0.821 40 H 0.199 0.801 41 H 0.185 0.815 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.139 0.861 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.126 11.916 27.196 30.317 hybrid contribution 0.644 -0.202 -1.404 1.557 sum -5.482 11.714 25.792 28.853 Atomic orbital electron populations 1.22370 0.96348 1.01738 1.01390 1.20525 0.94068 0.94820 0.84799 0.93323 1.42677 1.78644 1.10539 1.05841 1.19655 1.34747 0.94303 0.87973 0.90272 1.25558 1.03000 0.96893 1.01525 1.69827 1.52671 1.10298 1.29368 0.85085 0.76576 0.78311 0.79859 1.18769 1.22530 1.22147 1.20893 0.97303 0.93068 0.84160 0.92673 1.22024 1.02396 0.95470 1.00869 1.45883 1.26248 1.56435 1.06951 1.18459 0.84221 0.79763 0.83678 1.90798 1.23827 1.43760 1.85855 1.20095 0.99706 1.04931 0.91452 1.21671 0.92139 0.94022 1.01448 1.21479 1.01384 0.99150 0.90208 1.21680 0.93091 0.95284 1.00230 1.19319 0.95846 1.00477 0.84802 1.19545 0.88642 0.94609 0.92064 1.86327 1.13938 1.33832 1.90660 1.22752 0.87230 0.95206 0.96416 1.22490 1.01350 1.02942 0.95132 1.22923 0.81439 0.93326 1.04327 1.86353 1.37455 1.71824 1.29510 0.90328 0.93511 0.92990 0.79029 0.94120 0.92816 0.93552 0.90672 0.74831 0.82120 0.80125 0.81531 0.92816 0.88217 0.86142 0.90798 0.91537 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 9.01 71.98 0.65 -4.20 16 2 C 0.17 6.30 2.93 44.99 0.13 6.43 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.73 -36.38 5.03 -322.94 -1.63 -38.01 16 5 C -0.23 -12.80 9.93 84.03 0.83 -11.96 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 8 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16 9 Si 0.97 45.99 29.55 68.60 2.03 48.01 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 13 C 0.15 5.39 2.62 44.99 0.12 5.51 16 14 H 0.05 2.34 7.58 -2.39 -0.02 2.33 16 15 C -0.15 -5.33 9.00 71.98 0.65 -4.68 16 16 N -0.70 -19.67 4.94 -445.68 -2.20 -21.87 16 17 C 0.55 17.74 7.73 86.70 0.67 18.41 16 18 O -0.56 -23.33 14.85 16.80 0.25 -23.08 16 19 C -0.16 -4.03 5.88 -20.03 -0.12 -4.14 16 20 C -0.07 -1.16 9.54 22.56 0.22 -0.94 16 21 C -0.10 -1.12 10.02 22.25 0.22 -0.89 16 22 C -0.08 -1.15 9.99 22.39 0.22 -0.93 16 23 C 0.04 0.84 5.72 22.43 0.13 0.97 16 24 C 0.10 2.64 5.75 22.79 0.13 2.77 16 25 O -0.33 -10.44 8.25 -68.04 -0.56 -11.00 16 26 C 0.06 1.34 6.52 71.68 0.47 1.81 16 27 C -0.18 -2.79 5.92 29.98 0.18 -2.61 16 28 C 0.05 0.74 6.51 71.67 0.47 1.21 16 29 O -0.33 -6.92 10.16 -84.44 -0.86 -7.78 16 30 H 0.08 1.64 6.29 -2.39 -0.02 1.63 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.63 6.57 -2.39 -0.02 1.62 16 33 H 0.38 20.16 5.77 -92.71 -0.54 19.62 16 34 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.05 2.17 6.29 -2.39 -0.02 2.16 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 2.36 6.57 -2.39 -0.02 2.35 16 38 H 0.41 8.42 4.62 -92.71 -0.43 8.00 16 39 H 0.16 1.57 6.42 -2.91 -0.02 1.55 16 40 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.05 1.19 7.94 -2.39 -0.02 1.17 16 43 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 0.79 7.93 -2.39 -0.02 0.77 16 47 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.00 374.91 2.79 -76.21 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.05 Total: 34.17 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.43 Total: 2.77 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -3.54 Total: -119.30 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.17 Total: -41.87 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.00 2.79 -76.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755260754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.319 kcal (2) G-P(sol) polarization free energy of solvation -79.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds