Wall clock time and date at job start Tue Mar 31 2020 18:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 5 5 C 1.34709 * 116.99212 * 90.00210 * 4 2 1 6 6 O 1.21470 * 120.00751 * 0.02562 * 5 4 2 7 7 C 1.47754 * 119.99810 * 180.02562 * 5 4 2 8 8 C 1.39664 * 120.10932 * 359.72606 * 7 5 4 9 9 C 1.37976 * 119.99682 * 179.76908 * 8 7 5 10 10 C 1.38249 * 120.22980 * 0.50507 * 9 8 7 11 11 C 1.38989 * 120.23203 * 359.74593 * 10 9 8 12 12 N 1.39721 * 119.99983 * 179.97438 * 11 10 9 13 13 C 1.46496 * 119.99868 * 180.02562 * 12 11 10 14 14 C 1.46504 * 120.00113 * 0.02562 * 12 11 10 15 15 C 1.38660 * 119.99884 * 359.97438 * 11 10 9 16 16 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 17 17 O 1.21283 * 120.00236 * 114.99716 * 16 2 1 18 18 N 1.34774 * 119.99861 * 294.99892 * 16 2 1 19 19 C 1.46507 * 120.00108 * 359.97438 * 18 16 2 20 20 C 1.46496 * 120.00367 * 180.02562 * 18 16 2 21 21 C 1.50695 * 109.47370 * 89.99805 * 20 18 16 22 22 H 1.08005 * 120.00163 * 0.02562 * 21 20 18 23 23 C 1.37882 * 120.00369 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99460 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00346 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47380 * 89.99339 * 25 23 21 27 27 H 1.48499 * 109.46961 * 209.99945 * 25 23 21 28 28 H 1.48505 * 109.46659 * 329.99738 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00484 * 359.97438 * 8 7 5 33 33 H 1.07997 * 119.88435 * 180.22876 * 9 8 7 34 34 H 1.08005 * 119.88476 * 179.76492 * 10 9 8 35 35 H 1.09001 * 109.47226 * 60.00025 * 13 12 11 36 36 H 1.09001 * 109.47332 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.47377 * 300.00706 * 13 12 11 38 38 H 1.08994 * 109.47121 * 89.99772 * 14 12 11 39 39 H 1.09001 * 109.46747 * 210.00222 * 14 12 11 40 40 H 1.08999 * 109.46846 * 329.99789 * 14 12 11 41 41 H 1.08001 * 120.12172 * 180.02562 * 15 11 10 42 42 H 1.09002 * 109.47123 * 89.99538 * 19 18 16 43 43 H 1.08997 * 109.47369 * 209.99929 * 19 18 16 44 44 H 1.09002 * 109.47042 * 330.00239 * 19 18 16 45 45 H 1.09001 * 109.47223 * 209.99860 * 20 18 16 46 46 H 1.09007 * 109.46674 * 329.99720 * 20 18 16 47 47 H 0.96998 * 120.00028 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2179 0.0666 -2.2850 6 8 1.9978 1.2608 -2.2541 7 6 2.7092 -0.5621 -3.5285 8 6 2.9684 -1.9339 -3.5650 9 6 3.4226 -2.5194 -4.7289 10 6 3.6327 -1.7508 -5.8587 11 6 3.3828 -0.3839 -5.8316 12 7 3.5973 0.3884 -6.9761 13 6 3.3344 1.8293 -6.9473 14 6 4.0850 -0.2428 -8.2049 15 6 2.9206 0.2135 -4.6687 16 6 2.0324 -0.7105 1.2305 17 8 2.6530 -1.7468 1.1215 18 7 1.7919 -0.1942 2.4520 19 6 1.0427 1.0579 2.5837 20 6 2.2807 -0.8845 3.6482 21 6 3.6620 -0.3861 3.9866 22 1 4.1291 0.3696 3.3723 23 6 4.3298 -0.8948 5.0804 24 7 3.7609 -1.8147 5.8286 25 14 6.0417 -0.2766 5.5002 26 1 5.9369 0.8867 6.4172 27 1 6.8111 -1.3608 6.1619 28 1 6.7382 0.1358 4.2551 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.8103 -2.5371 -2.6832 33 1 3.6190 -3.5810 -4.7562 34 1 3.9920 -2.2143 -6.7657 35 1 3.9640 2.2985 -6.1912 36 1 3.5582 2.2591 -7.9236 37 1 2.2858 2.0026 -6.7053 38 1 3.2371 -0.5702 -8.8064 39 1 4.6771 0.4755 -8.7719 40 1 4.7038 -1.1033 -7.9504 41 1 2.7254 1.2754 -4.6455 42 1 -0.0215 0.8374 2.6677 43 1 1.3755 1.5884 3.4758 44 1 1.2166 1.6794 1.7052 45 1 1.6082 -0.6857 4.4827 46 1 2.3177 -1.9573 3.4589 47 1 4.2305 -2.1723 6.5983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052421915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:46 Heat of formation + Delta-G solvation = -71.473366 kcal Electronic energy + Delta-G solvation = -28455.334689 eV Core-core repulsion = 24411.207548 eV Total energy + Delta-G solvation = -4044.127141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73829 -39.67032 -38.76341 -36.50549 -36.19838 -34.89111 -32.88297 -31.88329 -31.26461 -30.30905 -28.62233 -27.68635 -26.15692 -25.10742 -24.93189 -23.83094 -22.23450 -21.59530 -20.40880 -18.84636 -18.29064 -17.19396 -16.58658 -16.47675 -16.02703 -15.88226 -15.78638 -15.50569 -15.38618 -15.15059 -14.57093 -14.26813 -14.01565 -13.89519 -13.54033 -13.26987 -13.03144 -12.93893 -12.64765 -12.63554 -12.48744 -12.34806 -12.14785 -12.05655 -11.75612 -11.65128 -11.42602 -11.27340 -11.18191 -10.90390 -10.66651 -10.56498 -10.48744 -10.15772 -10.14622 -9.63746 -9.20404 -8.87757 -8.43777 -7.70901 -7.60758 -6.04771 -4.09513 0.62149 1.36049 2.44452 2.56698 2.83498 3.28820 3.31322 3.37861 3.43625 3.72479 3.90906 4.44694 4.54304 4.60583 4.64988 4.80921 4.87442 4.88895 4.98149 5.03943 5.13070 5.19759 5.20810 5.25264 5.29860 5.32362 5.36542 5.40595 5.55133 5.64369 5.70148 5.70365 5.86875 5.92086 6.03270 6.23729 6.27145 6.30195 6.44559 6.52338 6.87973 7.00025 7.12760 7.40420 7.48227 7.78327 7.91577 8.21476 8.31090 8.86419 9.01354 9.55479 11.03361 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016123 B = 0.002424 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.234379 B =11546.178885 C =12117.034986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.106 0.894 4 O -0.318 6.318 5 C 0.508 3.492 6 O -0.510 6.510 7 C -0.075 4.075 8 C -0.112 4.112 9 C -0.086 4.086 10 C -0.164 4.164 11 C 0.197 3.803 12 N -0.640 5.640 13 C 0.094 3.906 14 C 0.094 3.906 15 C -0.131 4.131 16 C 0.509 3.491 17 O -0.519 6.519 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.247 3.753 21 C -0.528 4.528 22 H 0.057 0.943 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.136 0.864 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 4.881 -26.262 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 H 0.124 0.876 4 O -0.233 6.233 5 C 0.353 3.647 6 O -0.400 6.400 7 C -0.077 4.077 8 C -0.132 4.132 9 C -0.104 4.104 10 C -0.186 4.186 11 C 0.097 3.903 12 N -0.353 5.353 13 C -0.049 4.049 14 C -0.049 4.049 15 C -0.154 4.154 16 C 0.293 3.707 17 O -0.394 6.394 18 N -0.330 5.330 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.159 0.841 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.154 0.846 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.705 4.665 -26.248 27.071 hybrid contribution 0.938 0.620 0.372 1.184 sum -3.767 5.285 -25.876 26.677 Atomic orbital electron populations 1.22279 0.92344 1.04063 1.04007 1.22647 0.95736 0.97659 0.82789 0.87649 1.86662 1.76498 1.40837 1.19313 1.21278 0.74231 0.85026 0.84127 1.90787 1.48750 1.15963 1.84498 1.18805 1.03927 0.94271 0.90722 1.21411 0.99099 0.93527 0.99181 1.20925 0.97642 0.99982 0.91889 1.20944 1.05780 0.92005 0.99897 1.17565 0.95581 0.90668 0.86532 1.46266 1.72679 1.06908 1.09461 1.21634 1.00979 0.79912 1.02382 1.21658 0.98741 0.98681 0.85785 1.20650 1.03590 1.00421 0.90700 1.19756 0.81165 0.85952 0.83809 1.90703 1.39558 1.23391 1.85746 1.48065 1.54078 1.23932 1.06894 1.21846 0.95357 0.86748 1.02825 1.19348 0.94282 0.93818 0.79733 1.21429 1.01030 1.22952 1.11269 0.92432 1.24933 0.98219 0.94878 0.96054 1.69929 1.38144 1.28028 1.17210 0.86482 0.84056 0.78351 0.78474 1.20620 1.21041 1.19863 0.91293 0.89291 0.90915 0.84095 0.85045 0.85496 0.92585 0.90820 0.92611 0.93398 0.91501 0.91292 0.84647 0.93118 0.90305 0.92341 0.94609 0.93620 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.28 37.16 0.34 -1.96 16 2 C 0.07 1.22 2.17 -27.88 -0.06 1.16 16 3 H 0.11 1.77 6.15 -51.93 -0.32 1.45 16 4 O -0.32 -5.69 8.67 -47.18 -0.41 -6.10 16 5 C 0.51 8.32 7.87 34.62 0.27 8.59 16 6 O -0.51 -8.84 15.60 -19.24 -0.30 -9.14 16 7 C -0.08 -1.06 5.87 -105.00 -0.62 -1.67 16 8 C -0.11 -1.42 9.61 -39.15 -0.38 -1.80 16 9 C -0.09 -0.87 10.02 -39.67 -0.40 -1.27 16 10 C -0.16 -1.54 9.20 -39.30 -0.36 -1.90 16 11 C 0.20 2.06 6.55 -83.83 -0.55 1.52 16 12 N -0.64 -5.28 3.41 -187.59 -0.64 -5.92 16 13 C 0.09 0.63 9.40 59.84 0.56 1.19 16 14 C 0.09 0.51 10.16 59.85 0.61 1.12 16 15 C -0.13 -1.61 8.85 -38.95 -0.34 -1.96 16 16 C 0.51 11.15 7.10 -10.98 -0.08 11.07 16 17 O -0.52 -13.65 16.09 -14.05 -0.23 -13.88 16 18 N -0.60 -12.83 2.86 -182.95 -0.52 -13.35 16 19 C 0.08 1.20 8.92 59.85 0.53 1.74 16 20 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 21 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 22 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 25 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 28 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.06 5.12 -51.93 -0.27 0.79 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.14 1.87 7.60 -52.49 -0.40 1.47 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.88 6.12 -52.48 -0.32 0.55 16 35 H 0.06 0.40 7.95 -51.93 -0.41 -0.01 16 36 H 0.07 0.33 7.79 -51.93 -0.40 -0.08 16 37 H 0.06 0.38 7.94 -51.93 -0.41 -0.03 16 38 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16 40 H 0.07 0.34 6.19 -51.93 -0.32 0.02 16 41 H 0.14 1.63 6.32 -52.49 -0.33 1.29 16 42 H 0.05 0.66 7.02 -51.93 -0.36 0.30 16 43 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 44 H 0.06 0.79 6.08 -51.93 -0.32 0.48 16 45 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 46 H 0.05 1.35 7.42 -51.92 -0.39 0.96 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -35.72 390.15 -8.15 -43.87 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.74 Total: -1.04 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -0.91 Total: 8.50 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.43 Total: -45.16 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.94 Total: -29.12 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.72 -8.15 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.601 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds