Wall clock time and date at job start Tue Mar 31 2020 18:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 5 5 C 1.34709 * 116.99212 * 90.00210 * 4 2 1 6 6 O 1.21470 * 120.00751 * 0.02562 * 5 4 2 7 7 C 1.47754 * 119.99810 * 180.02562 * 5 4 2 8 8 C 1.39664 * 120.10932 * 359.72606 * 7 5 4 9 9 C 1.37976 * 119.99682 * 179.76908 * 8 7 5 10 10 C 1.38249 * 120.22980 * 0.50507 * 9 8 7 11 11 C 1.38989 * 120.23203 * 359.74593 * 10 9 8 12 12 N 1.39721 * 119.99983 * 179.97438 * 11 10 9 13 13 C 1.46496 * 119.99868 * 180.02562 * 12 11 10 14 14 C 1.46504 * 120.00113 * 0.02562 * 12 11 10 15 15 C 1.38660 * 119.99884 * 359.97438 * 11 10 9 16 16 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 17 17 O 1.21283 * 120.00236 * 114.99716 * 16 2 1 18 18 N 1.34774 * 119.99861 * 294.99892 * 16 2 1 19 19 C 1.46507 * 120.00108 * 359.97438 * 18 16 2 20 20 C 1.46496 * 120.00367 * 180.02562 * 18 16 2 21 21 C 1.50695 * 109.47370 * 89.99805 * 20 18 16 22 22 H 1.08005 * 120.00163 * 0.02562 * 21 20 18 23 23 C 1.37882 * 120.00369 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99460 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00346 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47380 * 89.99339 * 25 23 21 27 27 H 1.48499 * 109.46961 * 209.99945 * 25 23 21 28 28 H 1.48505 * 109.46659 * 329.99738 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00484 * 359.97438 * 8 7 5 33 33 H 1.07997 * 119.88435 * 180.22876 * 9 8 7 34 34 H 1.08005 * 119.88476 * 179.76492 * 10 9 8 35 35 H 1.09001 * 109.47226 * 60.00025 * 13 12 11 36 36 H 1.09001 * 109.47332 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.47377 * 300.00706 * 13 12 11 38 38 H 1.08994 * 109.47121 * 89.99772 * 14 12 11 39 39 H 1.09001 * 109.46747 * 210.00222 * 14 12 11 40 40 H 1.08999 * 109.46846 * 329.99789 * 14 12 11 41 41 H 1.08001 * 120.12172 * 180.02562 * 15 11 10 42 42 H 1.09002 * 109.47123 * 89.99538 * 19 18 16 43 43 H 1.08997 * 109.47369 * 209.99929 * 19 18 16 44 44 H 1.09002 * 109.47042 * 330.00239 * 19 18 16 45 45 H 1.09001 * 109.47223 * 209.99860 * 20 18 16 46 46 H 1.09007 * 109.46674 * 329.99720 * 20 18 16 47 47 H 0.96998 * 120.00028 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2179 0.0666 -2.2850 6 8 1.9978 1.2608 -2.2541 7 6 2.7092 -0.5621 -3.5285 8 6 2.9684 -1.9339 -3.5650 9 6 3.4226 -2.5194 -4.7289 10 6 3.6327 -1.7508 -5.8587 11 6 3.3828 -0.3839 -5.8316 12 7 3.5973 0.3884 -6.9761 13 6 3.3344 1.8293 -6.9473 14 6 4.0850 -0.2428 -8.2049 15 6 2.9206 0.2135 -4.6687 16 6 2.0324 -0.7105 1.2305 17 8 2.6530 -1.7468 1.1215 18 7 1.7919 -0.1942 2.4520 19 6 1.0427 1.0579 2.5837 20 6 2.2807 -0.8845 3.6482 21 6 3.6620 -0.3861 3.9866 22 1 4.1291 0.3696 3.3723 23 6 4.3298 -0.8948 5.0804 24 7 3.7609 -1.8147 5.8286 25 14 6.0417 -0.2766 5.5002 26 1 5.9369 0.8867 6.4172 27 1 6.8111 -1.3608 6.1619 28 1 6.7382 0.1358 4.2551 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.8103 -2.5371 -2.6832 33 1 3.6190 -3.5810 -4.7562 34 1 3.9920 -2.2143 -6.7657 35 1 3.9640 2.2985 -6.1912 36 1 3.5582 2.2591 -7.9236 37 1 2.2858 2.0026 -6.7053 38 1 3.2371 -0.5702 -8.8064 39 1 4.6771 0.4755 -8.7719 40 1 4.7038 -1.1033 -7.9504 41 1 2.7254 1.2754 -4.6455 42 1 -0.0215 0.8374 2.6677 43 1 1.3755 1.5884 3.4758 44 1 1.2166 1.6794 1.7052 45 1 1.6082 -0.6857 4.4827 46 1 2.3177 -1.9573 3.4589 47 1 4.2305 -2.1723 6.5983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052421915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:46 Heat of formation + Delta-G solvation = -92.743075 kcal Electronic energy + Delta-G solvation = -28456.257013 eV Core-core repulsion = 24411.207548 eV Total energy + Delta-G solvation = -4045.049465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.01430 -40.82944 -40.13341 -37.69179 -37.09821 -36.71507 -34.91641 -33.21135 -32.29691 -31.12055 -29.62120 -29.14575 -27.68122 -26.25492 -25.75859 -25.40548 -23.79261 -22.43301 -21.52693 -20.45733 -19.32058 -18.71416 -18.41187 -17.90728 -17.35035 -17.19810 -16.75875 -16.59113 -16.45844 -16.32077 -15.96704 -15.80945 -14.96355 -14.88305 -14.72672 -14.62782 -14.29991 -14.14939 -13.76877 -13.55094 -13.47613 -13.47158 -13.33721 -13.16056 -13.05967 -13.04202 -12.83612 -12.64824 -12.54468 -12.49003 -12.23390 -12.14947 -11.97022 -11.73859 -11.67612 -10.90496 -10.65583 -10.64231 -10.08143 -9.53509 -8.31397 -8.24841 -6.39262 -0.36563 0.50454 1.18173 1.35369 1.38443 1.44521 1.48671 1.60397 2.16786 2.31666 2.42948 2.81621 3.04975 3.37459 3.46465 3.72870 3.81979 3.87202 4.04781 4.15765 4.24352 4.31345 4.36393 4.45169 4.51520 4.55597 4.59398 4.62958 4.68612 4.78929 4.84184 4.86169 4.89414 4.93250 4.95906 5.07121 5.09311 5.18058 5.22755 5.35005 5.47674 5.49939 5.69865 5.76819 6.02388 6.27119 6.41819 6.48073 6.60904 6.68998 7.18512 7.34372 8.82488 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016123 B = 0.002424 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.234379 B =11546.178885 C =12117.034986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 H 0.114 0.886 4 O -0.336 6.336 5 C 0.507 3.493 6 O -0.526 6.526 7 C -0.098 4.098 8 C -0.130 4.130 9 C -0.080 4.080 10 C -0.155 4.155 11 C 0.196 3.804 12 N -0.642 5.642 13 C 0.089 3.911 14 C 0.087 3.913 15 C -0.143 4.143 16 C 0.500 3.500 17 O -0.577 6.577 18 N -0.599 5.599 19 C 0.068 3.932 20 C 0.260 3.740 21 C -0.547 4.547 22 H 0.050 0.950 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.967 3.033 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.277 1.277 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.035 0.965 46 H 0.002 0.998 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 6.127 -28.618 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.020 3.980 3 H 0.132 0.868 4 O -0.251 6.251 5 C 0.354 3.646 6 O -0.417 6.417 7 C -0.100 4.100 8 C -0.151 4.151 9 C -0.098 4.098 10 C -0.177 4.177 11 C 0.094 3.906 12 N -0.353 5.353 13 C -0.054 4.054 14 C -0.055 4.055 15 C -0.166 4.166 16 C 0.287 3.713 17 O -0.456 6.456 18 N -0.331 5.331 19 C -0.074 4.074 20 C 0.140 3.860 21 C -0.585 4.585 22 H 0.068 0.932 23 C -0.190 4.190 24 N -0.564 5.564 25 Si 0.791 3.209 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.202 1.202 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.149 0.851 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.053 0.947 46 H 0.020 0.980 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.432 5.968 -28.631 29.580 hybrid contribution 0.842 0.227 0.989 1.318 sum -3.590 6.194 -27.642 28.554 Atomic orbital electron populations 1.22290 0.89075 1.04514 1.05902 1.22592 0.97989 0.96691 0.80762 0.86804 1.86670 1.76962 1.41672 1.19828 1.21751 0.73709 0.84922 0.84248 1.90752 1.49766 1.16430 1.84738 1.18828 1.05868 0.95032 0.90240 1.21397 1.00661 0.93071 0.99941 1.21215 0.96285 1.01361 0.90988 1.21304 1.04241 0.91490 1.00665 1.17736 0.94727 0.91456 0.86710 1.46562 1.71841 1.07411 1.09530 1.21753 1.00610 0.79339 1.03700 1.21893 0.99455 0.99411 0.84725 1.20651 1.04644 1.00210 0.91074 1.20587 0.80146 0.85436 0.85112 1.90662 1.42173 1.26061 1.86734 1.48047 1.54100 1.25362 1.05600 1.22203 0.96572 0.84515 1.04077 1.18855 0.93866 0.91836 0.81485 1.21674 1.02244 1.23095 1.11519 0.93182 1.25830 1.02356 0.94924 0.95857 1.70035 1.39864 1.28885 1.17647 0.85425 0.78791 0.78417 0.78239 1.18614 1.20389 1.20162 0.89520 0.87123 0.91245 0.85685 0.82413 0.82293 0.93391 0.88159 0.93039 0.92422 0.89703 0.90552 0.85057 0.89581 0.90555 0.89601 0.94717 0.98011 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 9.28 71.98 0.67 -3.48 16 2 C 0.08 2.72 2.17 29.85 0.06 2.78 16 3 H 0.11 3.76 6.15 -2.39 -0.01 3.75 16 4 O -0.34 -12.48 8.67 -49.82 -0.43 -12.91 16 5 C 0.51 17.12 7.87 70.34 0.55 17.67 16 6 O -0.53 -18.44 15.60 19.93 0.31 -18.13 16 7 C -0.10 -2.83 5.87 -20.11 -0.12 -2.94 16 8 C -0.13 -3.40 9.61 22.55 0.22 -3.18 16 9 C -0.08 -1.51 10.02 22.21 0.22 -1.29 16 10 C -0.15 -2.54 9.20 22.45 0.21 -2.33 16 11 C 0.20 3.81 6.55 38.16 0.25 4.06 16 12 N -0.64 -9.09 3.41 -747.41 -2.55 -11.64 16 13 C 0.09 1.03 9.40 127.77 1.20 2.23 16 14 C 0.09 0.64 10.16 127.77 1.30 1.94 16 15 C -0.14 -3.52 8.85 22.68 0.20 -3.31 16 16 C 0.50 22.65 7.10 87.66 0.62 23.27 16 17 O -0.58 -32.18 16.09 15.71 0.25 -31.93 16 18 N -0.60 -26.22 2.86 -851.11 -2.43 -28.66 16 19 C 0.07 2.05 8.92 127.77 1.14 3.19 16 20 C 0.26 14.22 5.16 85.63 0.44 14.66 16 21 C -0.55 -32.14 9.39 25.60 0.24 -31.90 16 22 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 23 C 0.01 0.57 5.46 84.66 0.46 1.03 16 24 N -0.92 -56.16 13.29 21.45 0.28 -55.88 16 25 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 26 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 28 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.11 2.33 5.12 -2.39 -0.01 2.32 16 31 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.13 3.57 7.60 -2.91 -0.02 3.55 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.16 1.56 6.12 -2.91 -0.02 1.54 16 35 H 0.05 0.64 7.95 -2.39 -0.02 0.62 16 36 H 0.10 0.61 7.79 -2.39 -0.02 0.59 16 37 H 0.05 0.65 7.94 -2.39 -0.02 0.63 16 38 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.08 0.35 7.92 -2.39 -0.02 0.33 16 40 H 0.08 0.46 6.19 -2.39 -0.01 0.44 16 41 H 0.13 3.22 6.32 -2.91 -0.02 3.20 16 42 H 0.09 2.02 7.02 -2.39 -0.02 2.00 16 43 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 44 H 0.09 2.13 6.08 -2.39 -0.01 2.12 16 45 H 0.03 1.88 8.07 -2.39 -0.02 1.86 16 46 H 0.00 0.11 7.42 -2.38 -0.02 0.09 16 47 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -81.54 390.15 6.12 -75.42 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.98 Total: 13.65 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 7.67 Total: 22.39 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -4.70 Total: -96.18 kcal Atomic # 8 Polarization: -63.10 SS G_CDS: 0.13 Total: -62.97 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -81.54 6.12 -75.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.324 kcal (2) G-P(sol) polarization free energy of solvation -81.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds