Wall clock time and date at job start Tue Mar 31 2020 18:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47542 * 2 1 4 4 O 1.45205 * 109.46863 * 120.00253 * 2 1 3 5 5 C 1.34716 * 116.99655 * 269.99563 * 4 2 1 6 6 O 1.21469 * 119.99858 * 0.02562 * 5 4 2 7 7 C 1.47740 * 119.99648 * 179.97438 * 5 4 2 8 8 C 1.39663 * 120.11799 * 0.03118 * 7 5 4 9 9 C 1.37971 * 120.00296 * 179.97438 * 8 7 5 10 10 C 1.38256 * 120.22935 * 359.73953 * 9 8 7 11 11 C 1.38986 * 120.23171 * 0.51441 * 10 9 8 12 12 N 1.39715 * 120.00147 * 179.76571 * 11 10 9 13 13 C 1.46501 * 120.00129 * 179.72124 * 12 11 10 14 14 C 1.46498 * 120.00079 * 359.44808 * 12 11 10 15 15 C 1.38663 * 119.99709 * 359.48665 * 11 10 9 16 16 C 1.50702 * 109.47368 * 239.99765 * 2 1 3 17 17 O 1.21283 * 120.00099 * 256.03572 * 16 2 1 18 18 N 1.34775 * 119.99647 * 76.03120 * 16 2 1 19 19 C 1.46500 * 119.99946 * 5.36125 * 18 16 2 20 20 C 1.46498 * 120.00032 * 185.36949 * 18 16 2 21 21 C 1.50701 * 109.47610 * 89.99610 * 20 18 16 22 22 H 1.08000 * 119.99629 * 0.02562 * 21 20 18 23 23 C 1.37873 * 120.00345 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99829 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00244 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46871 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47031 * 119.99447 * 25 23 21 28 28 H 1.48491 * 109.47205 * 239.99657 * 25 23 21 29 29 H 1.08998 * 109.47190 * 306.13819 * 1 2 3 30 30 H 1.08996 * 109.47008 * 66.13451 * 1 2 3 31 31 H 1.08995 * 109.47435 * 186.13792 * 1 2 3 32 32 H 1.08000 * 120.00016 * 359.97438 * 8 7 5 33 33 H 1.07995 * 119.88214 * 180.02562 * 9 8 7 34 34 H 1.08001 * 119.88348 * 180.25634 * 10 9 8 35 35 H 1.08998 * 109.47418 * 89.99559 * 13 12 11 36 36 H 1.08994 * 109.47563 * 210.00223 * 13 12 11 37 37 H 1.09006 * 109.46701 * 330.00046 * 13 12 11 38 38 H 1.08997 * 109.47073 * 89.99767 * 14 12 11 39 39 H 1.09002 * 109.47123 * 210.00023 * 14 12 11 40 40 H 1.08999 * 109.47183 * 329.99811 * 14 12 11 41 41 H 1.08006 * 120.11828 * 180.23124 * 15 11 10 42 42 H 1.09001 * 109.46815 * 84.83154 * 19 18 16 43 43 H 1.09000 * 109.46938 * 204.82383 * 19 18 16 44 44 H 1.08993 * 109.47627 * 324.82456 * 19 18 16 45 45 H 1.09000 * 109.47271 * 209.99937 * 20 18 16 46 46 H 1.09007 * 109.46756 * 329.99388 * 20 18 16 47 47 H 0.97006 * 120.00100 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6846 1.1856 5 6 2.2179 0.0667 2.2851 6 8 1.9970 1.2607 2.2543 7 6 2.7090 -0.5620 3.5285 8 6 2.9634 -1.9348 3.5667 9 6 3.4226 -2.5194 4.7290 10 6 3.6377 -1.7498 5.8573 11 6 3.3827 -0.3838 5.8317 12 7 3.5972 0.3885 6.9761 13 6 3.3343 1.8294 6.9473 14 6 4.0792 -0.2437 8.2066 15 6 2.9211 0.2136 4.6686 16 6 2.0324 -0.7105 -1.2304 17 8 2.4735 -1.8368 -1.1427 18 7 1.9914 -0.0941 -2.4283 19 6 1.5691 1.3058 -2.5177 20 6 2.3689 -0.8242 -3.6410 21 6 1.1507 -1.4918 -4.2253 22 1 0.1911 -1.3827 -3.7419 23 6 1.2611 -2.2417 -5.3770 24 7 2.4296 -2.3741 -5.9659 25 14 -0.2488 -3.0697 -6.1008 26 1 -1.4317 -2.7686 -5.2551 27 1 -0.4808 -2.5608 -7.4764 28 1 -0.0341 -4.5384 -6.1460 29 1 -0.3633 0.6060 0.8299 30 1 -0.3633 0.4158 -0.9398 31 1 -0.3634 -1.0217 0.1099 32 1 2.8007 -2.5388 2.6863 33 1 3.6190 -3.5809 4.7562 34 1 4.0011 -2.2125 6.7629 35 1 2.3002 2.0160 7.2370 36 1 4.0034 2.3349 7.6436 37 1 3.5036 2.2095 5.9398 38 1 5.1691 -0.2336 8.2174 39 1 3.7022 0.3059 9.0692 40 1 3.7249 -1.2736 8.2489 41 1 2.7259 1.2756 4.6455 42 1 2.4231 1.9558 -2.3267 43 1 1.1776 1.5042 -3.5154 44 1 0.7926 1.4992 -1.7777 45 1 2.7862 -0.1285 -4.3689 46 1 3.1137 -1.5804 -3.3928 47 1 2.5073 -2.9014 -6.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052421916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:49 Heat of formation + Delta-G solvation = -71.546368 kcal Electronic energy + Delta-G solvation = -28402.719230 eV Core-core repulsion = 24358.588924 eV Total energy + Delta-G solvation = -4044.130306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75731 -39.68853 -38.76181 -36.52009 -36.22042 -34.85967 -32.83190 -31.92489 -31.29662 -30.31688 -28.64814 -27.77230 -26.05803 -25.13160 -24.95655 -23.83467 -22.24760 -21.60093 -20.42022 -18.82664 -18.31892 -17.20962 -16.62284 -16.48975 -16.05255 -15.85625 -15.81208 -15.52258 -15.42579 -15.05426 -14.60515 -14.33513 -14.09913 -13.94025 -13.56126 -13.16615 -13.01953 -12.92528 -12.71038 -12.57401 -12.43819 -12.31241 -12.12095 -12.05869 -11.78963 -11.70774 -11.43015 -11.25675 -11.23071 -10.89541 -10.68618 -10.57928 -10.50456 -10.18211 -10.17375 -9.63367 -9.22875 -8.88654 -8.45361 -7.70203 -7.61895 -6.05940 -4.11128 0.59685 1.33654 2.43144 2.53832 2.81648 3.26358 3.29332 3.37303 3.41544 3.69847 3.91901 4.42720 4.53487 4.56875 4.64375 4.80900 4.87064 4.89044 4.96652 5.08177 5.12232 5.15140 5.20770 5.24676 5.28670 5.31500 5.36228 5.38756 5.55338 5.63320 5.72869 5.76424 5.88633 5.89914 6.11099 6.24354 6.27131 6.28869 6.43224 6.50344 6.85753 7.00432 7.11108 7.41387 7.48432 7.76092 7.90432 8.20143 8.31084 8.85095 9.00342 9.54016 11.02160 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.002226 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.890446 B =12575.249067 C =13109.662407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.319 6.319 5 C 0.508 3.492 6 O -0.510 6.510 7 C -0.075 4.075 8 C -0.113 4.113 9 C -0.085 4.085 10 C -0.164 4.164 11 C 0.198 3.802 12 N -0.640 5.640 13 C 0.091 3.909 14 C 0.095 3.905 15 C -0.134 4.134 16 C 0.511 3.489 17 O -0.520 6.520 18 N -0.597 5.597 19 C 0.074 3.926 20 C 0.245 3.755 21 C -0.528 4.528 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.137 0.863 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 7.635 26.879 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.234 6.234 5 C 0.353 3.647 6 O -0.400 6.400 7 C -0.077 4.077 8 C -0.133 4.133 9 C -0.104 4.104 10 C -0.187 4.187 11 C 0.097 3.903 12 N -0.353 5.353 13 C -0.052 4.052 14 C -0.048 4.048 15 C -0.157 4.157 16 C 0.295 3.705 17 O -0.395 6.395 18 N -0.330 5.330 19 C -0.070 4.070 20 C 0.127 3.873 21 C -0.567 4.567 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.208 1.208 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.159 0.841 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.155 0.845 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.502 7.410 26.858 27.902 hybrid contribution -0.867 -0.202 -0.550 1.047 sum 0.635 7.208 26.307 27.284 Atomic orbital electron populations 1.22162 0.92070 1.04195 1.03765 1.22686 0.96076 0.97388 0.82590 0.87946 1.86681 1.76443 1.40877 1.19386 1.21287 0.74243 0.85024 0.84165 1.90784 1.48746 1.15997 1.84500 1.18807 1.03897 0.94262 0.90745 1.21419 0.99088 0.93535 0.99277 1.20931 0.97517 0.99989 0.91916 1.20943 1.06008 0.91969 0.99763 1.17581 0.95433 0.90684 0.86575 1.46259 1.72839 1.06848 1.09343 1.21668 1.00580 0.79975 1.02965 1.21625 0.98805 0.98683 0.85736 1.20695 1.03846 1.00415 0.90701 1.19749 0.80172 0.86836 0.83764 1.90692 1.45115 1.18387 1.85328 1.48070 1.65346 1.11910 1.07704 1.21833 0.99007 0.82675 1.03523 1.19372 0.96704 0.92085 0.79184 1.21465 0.94815 1.31297 1.09114 0.92289 1.24946 0.96267 0.96167 0.96769 1.69946 1.23148 1.40468 1.19659 0.86426 0.82802 0.79380 0.78719 1.19771 1.20963 1.20841 0.91254 0.89468 0.90588 0.84069 0.85032 0.85490 0.93254 0.91457 0.91049 0.93331 0.91513 0.91290 0.84516 0.93430 0.90084 0.92235 0.94636 0.93550 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.19 37.16 0.34 -2.10 16 2 C 0.07 1.24 2.14 -27.88 -0.06 1.18 16 3 H 0.10 1.64 6.31 -51.93 -0.33 1.32 16 4 O -0.32 -5.64 8.71 -47.06 -0.41 -6.05 16 5 C 0.51 8.08 7.87 34.61 0.27 8.36 16 6 O -0.51 -8.56 15.60 -19.24 -0.30 -8.86 16 7 C -0.08 -1.02 5.87 -105.01 -0.62 -1.64 16 8 C -0.11 -1.40 9.61 -39.15 -0.38 -1.78 16 9 C -0.08 -0.84 10.02 -39.67 -0.40 -1.23 16 10 C -0.16 -1.50 9.20 -39.30 -0.36 -1.86 16 11 C 0.20 2.00 6.55 -83.83 -0.55 1.45 16 12 N -0.64 -5.09 3.41 -187.59 -0.64 -5.73 16 13 C 0.09 0.58 10.18 59.85 0.61 1.19 16 14 C 0.09 0.49 10.18 59.85 0.61 1.10 16 15 C -0.13 -1.59 8.75 -38.95 -0.34 -1.93 16 16 C 0.51 11.18 6.95 -10.99 -0.08 11.10 16 17 O -0.52 -13.60 16.13 -13.54 -0.22 -13.82 16 18 N -0.60 -12.90 2.86 -182.95 -0.52 -13.42 16 19 C 0.07 1.18 9.79 59.85 0.59 1.77 16 20 C 0.25 6.44 5.18 -5.19 -0.03 6.41 16 21 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 22 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 25 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.22 6.33 -51.93 -0.33 0.90 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.14 1.84 7.60 -52.49 -0.40 1.44 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.85 6.14 -52.49 -0.32 0.52 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 37 H 0.07 0.50 6.19 -51.93 -0.32 0.18 16 38 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 40 H 0.07 0.31 6.21 -51.93 -0.32 -0.01 16 41 H 0.14 1.56 5.73 -52.48 -0.30 1.26 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 44 H 0.06 0.81 4.92 -51.93 -0.26 0.55 16 45 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 46 H 0.05 1.38 7.36 -51.92 -0.38 0.99 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -35.16 391.12 -8.00 -43.17 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.72 Total: -0.61 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -0.81 Total: 8.44 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.43 Total: -44.91 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.93 Total: -28.73 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.16 -8.00 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.378 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds