Wall clock time and date at job start Tue Mar 31 2020 18:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47542 * 2 1 4 4 O 1.45205 * 109.46863 * 120.00253 * 2 1 3 5 5 C 1.34716 * 116.99655 * 269.99563 * 4 2 1 6 6 O 1.21469 * 119.99858 * 0.02562 * 5 4 2 7 7 C 1.47740 * 119.99648 * 179.97438 * 5 4 2 8 8 C 1.39663 * 120.11799 * 0.03118 * 7 5 4 9 9 C 1.37971 * 120.00296 * 179.97438 * 8 7 5 10 10 C 1.38256 * 120.22935 * 359.73953 * 9 8 7 11 11 C 1.38986 * 120.23171 * 0.51441 * 10 9 8 12 12 N 1.39715 * 120.00147 * 179.76571 * 11 10 9 13 13 C 1.46501 * 120.00129 * 179.72124 * 12 11 10 14 14 C 1.46498 * 120.00079 * 359.44808 * 12 11 10 15 15 C 1.38663 * 119.99709 * 359.48665 * 11 10 9 16 16 C 1.50702 * 109.47368 * 239.99765 * 2 1 3 17 17 O 1.21283 * 120.00099 * 256.03572 * 16 2 1 18 18 N 1.34775 * 119.99647 * 76.03120 * 16 2 1 19 19 C 1.46500 * 119.99946 * 5.36125 * 18 16 2 20 20 C 1.46498 * 120.00032 * 185.36949 * 18 16 2 21 21 C 1.50701 * 109.47610 * 89.99610 * 20 18 16 22 22 H 1.08000 * 119.99629 * 0.02562 * 21 20 18 23 23 C 1.37873 * 120.00345 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99829 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00244 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46871 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47031 * 119.99447 * 25 23 21 28 28 H 1.48491 * 109.47205 * 239.99657 * 25 23 21 29 29 H 1.08998 * 109.47190 * 306.13819 * 1 2 3 30 30 H 1.08996 * 109.47008 * 66.13451 * 1 2 3 31 31 H 1.08995 * 109.47435 * 186.13792 * 1 2 3 32 32 H 1.08000 * 120.00016 * 359.97438 * 8 7 5 33 33 H 1.07995 * 119.88214 * 180.02562 * 9 8 7 34 34 H 1.08001 * 119.88348 * 180.25634 * 10 9 8 35 35 H 1.08998 * 109.47418 * 89.99559 * 13 12 11 36 36 H 1.08994 * 109.47563 * 210.00223 * 13 12 11 37 37 H 1.09006 * 109.46701 * 330.00046 * 13 12 11 38 38 H 1.08997 * 109.47073 * 89.99767 * 14 12 11 39 39 H 1.09002 * 109.47123 * 210.00023 * 14 12 11 40 40 H 1.08999 * 109.47183 * 329.99811 * 14 12 11 41 41 H 1.08006 * 120.11828 * 180.23124 * 15 11 10 42 42 H 1.09001 * 109.46815 * 84.83154 * 19 18 16 43 43 H 1.09000 * 109.46938 * 204.82383 * 19 18 16 44 44 H 1.08993 * 109.47627 * 324.82456 * 19 18 16 45 45 H 1.09000 * 109.47271 * 209.99937 * 20 18 16 46 46 H 1.09007 * 109.46756 * 329.99388 * 20 18 16 47 47 H 0.97006 * 120.00100 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6846 1.1856 5 6 2.2179 0.0667 2.2851 6 8 1.9970 1.2607 2.2543 7 6 2.7090 -0.5620 3.5285 8 6 2.9634 -1.9348 3.5667 9 6 3.4226 -2.5194 4.7290 10 6 3.6377 -1.7498 5.8573 11 6 3.3827 -0.3838 5.8317 12 7 3.5972 0.3885 6.9761 13 6 3.3343 1.8294 6.9473 14 6 4.0792 -0.2437 8.2066 15 6 2.9211 0.2136 4.6686 16 6 2.0324 -0.7105 -1.2304 17 8 2.4735 -1.8368 -1.1427 18 7 1.9914 -0.0941 -2.4283 19 6 1.5691 1.3058 -2.5177 20 6 2.3689 -0.8242 -3.6410 21 6 1.1507 -1.4918 -4.2253 22 1 0.1911 -1.3827 -3.7419 23 6 1.2611 -2.2417 -5.3770 24 7 2.4296 -2.3741 -5.9659 25 14 -0.2488 -3.0697 -6.1008 26 1 -1.4317 -2.7686 -5.2551 27 1 -0.4808 -2.5608 -7.4764 28 1 -0.0341 -4.5384 -6.1460 29 1 -0.3633 0.6060 0.8299 30 1 -0.3633 0.4158 -0.9398 31 1 -0.3634 -1.0217 0.1099 32 1 2.8007 -2.5388 2.6863 33 1 3.6190 -3.5809 4.7562 34 1 4.0011 -2.2125 6.7629 35 1 2.3002 2.0160 7.2370 36 1 4.0034 2.3349 7.6436 37 1 3.5036 2.2095 5.9398 38 1 5.1691 -0.2336 8.2174 39 1 3.7022 0.3059 9.0692 40 1 3.7249 -1.2736 8.2489 41 1 2.7259 1.2756 4.6455 42 1 2.4231 1.9558 -2.3267 43 1 1.1776 1.5042 -3.5154 44 1 0.7926 1.4992 -1.7777 45 1 2.7862 -0.1285 -4.3689 46 1 3.1137 -1.5804 -3.3928 47 1 2.5073 -2.9014 -6.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052421916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:48 Heat of formation + Delta-G solvation = -92.102215 kcal Electronic energy + Delta-G solvation = -28403.610599 eV Core-core repulsion = 24358.588924 eV Total energy + Delta-G solvation = -4045.021675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.00987 -40.82520 -40.13382 -37.69276 -37.08836 -36.69329 -34.86227 -33.23439 -32.30566 -31.10260 -29.71435 -29.16046 -27.59834 -26.29338 -25.75307 -25.39910 -23.80100 -22.41193 -21.51644 -20.43072 -19.32000 -18.69771 -18.42216 -17.95189 -17.27614 -17.24266 -16.74816 -16.58786 -16.40214 -16.24961 -15.98766 -15.93462 -14.99108 -14.87846 -14.71889 -14.63161 -14.29102 -14.08935 -13.73339 -13.57865 -13.49636 -13.41132 -13.33591 -13.18179 -13.11019 -12.96876 -12.85265 -12.70136 -12.55722 -12.51036 -12.21517 -12.10572 -11.98046 -11.70025 -11.66185 -10.91109 -10.65722 -10.64726 -10.07679 -9.53481 -8.29496 -8.23302 -6.38105 -0.35967 0.50955 1.17989 1.37587 1.40101 1.44786 1.51216 1.58719 2.17264 2.33225 2.43592 2.82154 3.06853 3.37463 3.47024 3.74078 3.81095 3.85385 4.03398 4.19229 4.26684 4.27375 4.36793 4.44700 4.52759 4.53463 4.56499 4.62539 4.65646 4.80173 4.83825 4.85198 4.92008 4.92922 4.96672 5.05811 5.09642 5.19275 5.22614 5.35866 5.48590 5.51396 5.70168 5.77737 6.02735 6.27437 6.42781 6.48255 6.60716 6.70880 7.17977 7.35086 8.84544 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.002226 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.890446 B =12575.249067 C =13109.662407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.080 3.920 3 H 0.121 0.879 4 O -0.336 6.336 5 C 0.507 3.493 6 O -0.524 6.524 7 C -0.097 4.097 8 C -0.132 4.132 9 C -0.080 4.080 10 C -0.156 4.156 11 C 0.197 3.803 12 N -0.642 5.642 13 C 0.086 3.914 14 C 0.087 3.913 15 C -0.145 4.145 16 C 0.502 3.498 17 O -0.576 6.576 18 N -0.600 5.600 19 C 0.066 3.934 20 C 0.258 3.742 21 C -0.543 4.543 22 H 0.059 0.941 23 C 0.006 3.994 24 N -0.928 5.928 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.269 1.269 28 H -0.283 1.283 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.135 0.865 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.031 0.969 46 H 0.000 1.000 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 8.406 29.272 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 H 0.138 0.862 4 O -0.252 6.252 5 C 0.354 3.646 6 O -0.414 6.414 7 C -0.099 4.099 8 C -0.152 4.152 9 C -0.098 4.098 10 C -0.178 4.178 11 C 0.095 3.905 12 N -0.353 5.353 13 C -0.057 4.057 14 C -0.054 4.054 15 C -0.167 4.167 16 C 0.289 3.711 17 O -0.455 6.455 18 N -0.332 5.332 19 C -0.075 4.075 20 C 0.138 3.862 21 C -0.581 4.581 22 H 0.077 0.923 23 C -0.193 4.193 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.195 1.195 28 H -0.209 1.209 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.153 0.847 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.049 0.951 46 H 0.018 0.982 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.404 8.251 29.287 30.430 hybrid contribution -0.428 -0.401 -1.159 1.299 sum -0.024 7.850 28.128 29.203 Atomic orbital electron populations 1.22167 0.89819 1.04205 1.05342 1.22587 0.97517 0.97023 0.80697 0.86162 1.86693 1.76888 1.41730 1.19887 1.21738 0.73732 0.84929 0.84202 1.90751 1.49649 1.16361 1.84682 1.18819 1.05801 0.94954 0.90285 1.21392 1.00714 0.93143 0.99977 1.21206 0.96232 1.01316 0.91064 1.21290 1.04551 0.91502 1.00478 1.17743 0.94591 0.91413 0.86766 1.46552 1.72001 1.07375 1.09416 1.21788 1.01472 0.79426 1.03000 1.21850 0.99330 0.99310 0.84957 1.20713 1.04738 1.00311 0.90967 1.20571 0.79083 0.86408 0.85033 1.90653 1.47540 1.21001 1.86333 1.48060 1.64947 1.13817 1.06410 1.22157 1.01003 0.79597 1.04772 1.18882 0.95276 0.91304 0.80778 1.21721 0.95124 1.31820 1.09448 0.92320 1.25889 0.99495 0.96690 0.97197 1.70065 1.25357 1.41170 1.20188 0.85327 0.78945 0.77898 0.78399 1.18853 1.19460 1.20855 0.88889 0.88324 0.91629 0.85770 0.82534 0.82385 0.92790 0.89307 0.92117 0.92591 0.89760 0.90428 0.84688 0.90985 0.89948 0.89110 0.95144 0.98188 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 9.19 71.98 0.66 -3.86 16 2 C 0.08 2.78 2.14 29.85 0.06 2.85 16 3 H 0.12 3.73 6.31 -2.39 -0.02 3.72 16 4 O -0.34 -12.27 8.71 -50.02 -0.44 -12.71 16 5 C 0.51 16.49 7.87 70.33 0.55 17.04 16 6 O -0.52 -17.52 15.60 19.94 0.31 -17.21 16 7 C -0.10 -2.69 5.87 -20.11 -0.12 -2.81 16 8 C -0.13 -3.35 9.61 22.55 0.22 -3.13 16 9 C -0.08 -1.46 10.02 22.21 0.22 -1.24 16 10 C -0.16 -2.46 9.20 22.45 0.21 -2.26 16 11 C 0.20 3.66 6.55 38.17 0.25 3.91 16 12 N -0.64 -8.64 3.41 -747.42 -2.55 -11.19 16 13 C 0.09 0.93 10.18 127.77 1.30 2.23 16 14 C 0.09 0.61 10.18 127.77 1.30 1.91 16 15 C -0.14 -3.38 8.75 22.68 0.20 -3.18 16 16 C 0.50 22.68 6.95 87.66 0.61 23.29 16 17 O -0.58 -31.89 16.13 15.22 0.25 -31.64 16 18 N -0.60 -26.42 2.86 -851.13 -2.43 -28.85 16 19 C 0.07 2.05 9.79 127.77 1.25 3.31 16 20 C 0.26 14.14 5.18 85.63 0.44 14.59 16 21 C -0.54 -31.21 9.39 25.60 0.24 -30.97 16 22 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 23 C 0.01 0.36 5.46 84.65 0.46 0.83 16 24 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 25 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 26 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.10 2.57 6.33 -2.39 -0.02 2.55 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.12 3.50 7.60 -2.91 -0.02 3.47 16 33 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.16 1.48 6.14 -2.91 -0.02 1.46 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 0.57 8.07 -2.39 -0.02 0.56 16 37 H 0.06 0.79 6.19 -2.38 -0.01 0.78 16 38 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.08 0.32 8.07 -2.39 -0.02 0.30 16 40 H 0.08 0.42 6.21 -2.39 -0.01 0.40 16 41 H 0.14 3.10 5.73 -2.91 -0.02 3.08 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 2.54 8.03 -2.39 -0.02 2.52 16 44 H 0.09 2.24 4.92 -2.39 -0.01 2.23 16 45 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 46 H 0.00 0.00 7.36 -2.38 -0.02 -0.02 16 47 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -79.69 391.12 6.30 -73.39 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.98 Total: 14.88 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 7.86 Total: 22.51 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -4.70 Total: -96.08 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: 0.12 Total: -61.56 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -79.69 6.30 -73.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.716 kcal (2) G-P(sol) polarization free energy of solvation -79.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds