Wall clock time and date at job start Tue Mar 31 2020 18:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 O 1.45202 * 109.47243 * 240.00758 * 2 1 3 5 5 C 1.34753 * 117.00536 * 89.99501 * 4 2 1 6 6 O 1.21517 * 119.99744 * 0.02562 * 5 4 2 7 7 C 1.47384 * 120.00298 * 179.97438 * 5 4 2 8 8 C 1.39853 * 120.06911 * 359.72930 * 7 5 4 9 9 C 1.37112 * 119.91847 * 179.73894 * 8 7 5 10 10 C 1.39236 * 120.07629 * 0.51287 * 9 8 7 11 11 N 1.39019 * 119.92608 * 179.74084 * 10 9 8 12 12 C 1.46496 * 119.99817 * 180.02562 * 11 10 9 13 13 C 1.46505 * 119.99769 * 0.02562 * 11 10 9 14 14 C 1.39230 * 120.14909 * 359.75955 * 10 9 8 15 15 C 1.37108 * 120.07374 * 359.97438 * 14 10 9 16 16 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 17 17 O 1.21281 * 119.99422 * 114.99967 * 16 2 1 18 18 N 1.34769 * 120.00321 * 295.00799 * 16 2 1 19 19 C 1.46502 * 120.00154 * 359.97438 * 18 16 2 20 20 C 1.46499 * 119.99994 * 180.02562 * 18 16 2 21 21 C 1.50703 * 109.47449 * 89.99815 * 20 18 16 22 22 H 1.08002 * 119.99722 * 359.97438 * 21 20 18 23 23 C 1.37871 * 119.99952 * 180.02562 * 21 20 18 24 24 N 1.31508 * 120.00278 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99701 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47289 * 90.00146 * 25 23 21 27 27 H 1.48498 * 109.47104 * 209.99801 * 25 23 21 28 28 H 1.48499 * 109.47137 * 329.99741 * 25 23 21 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.07998 * 120.04020 * 359.97438 * 8 7 5 33 33 H 1.08000 * 119.96158 * 180.25721 * 9 8 7 34 34 H 1.09003 * 109.47001 * 90.00134 * 12 11 10 35 35 H 1.09001 * 109.46605 * 209.99678 * 12 11 10 36 36 H 1.09003 * 109.47181 * 329.99710 * 12 11 10 37 37 H 1.08998 * 109.46924 * 90.00136 * 13 11 10 38 38 H 1.08993 * 109.46768 * 209.99917 * 13 11 10 39 39 H 1.08996 * 109.47078 * 330.00179 * 13 11 10 40 40 H 1.08000 * 119.96710 * 179.97438 * 14 10 9 41 41 H 1.08004 * 120.03981 * 179.97438 * 15 14 10 42 42 H 1.08990 * 109.47314 * 89.99806 * 19 18 16 43 43 H 1.08998 * 109.47376 * 210.01109 * 19 18 16 44 44 H 1.09005 * 109.46677 * 330.00437 * 19 18 16 45 45 H 1.09007 * 109.46830 * 209.99384 * 20 18 16 46 46 H 1.08993 * 109.47505 * 329.99405 * 20 18 16 47 47 H 0.97003 * 120.00108 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6843 -1.1857 5 6 2.2180 0.0671 -2.2855 6 8 1.9977 1.2618 -2.2545 7 6 2.7091 -0.5597 -3.5257 8 6 2.9695 -1.9333 -3.5610 9 6 3.4213 -2.5142 -4.7180 10 6 3.6310 -1.7363 -5.8536 11 7 4.0942 -2.3276 -7.0234 12 6 4.3159 -1.5106 -8.2190 13 6 4.3606 -3.7677 -7.0604 14 6 3.3782 -0.3676 -5.8201 15 6 2.9211 0.2187 -4.6680 16 6 2.0324 -0.7104 1.2304 17 8 2.6530 -1.7466 1.1214 18 7 1.7919 -0.1943 2.4520 19 6 1.0425 1.0576 2.5837 20 6 2.2807 -0.8847 3.6480 21 6 3.6621 -0.3862 3.9866 22 1 4.1293 0.3690 3.3719 23 6 4.3297 -0.8950 5.0802 24 7 3.7611 -1.8150 5.8284 25 14 6.0422 -0.2776 5.4994 26 1 5.9383 0.8860 6.4162 27 1 6.8112 -1.3620 6.1611 28 1 6.7386 0.1340 4.2540 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.8113 -2.5365 -2.6792 33 1 3.6186 -3.5756 -4.7473 34 1 5.3397 -1.1364 -8.2186 35 1 4.1512 -2.1174 -9.1093 36 1 3.6219 -0.6701 -8.2186 37 1 3.4579 -4.2964 -7.3666 38 1 5.1600 -3.9711 -7.7729 39 1 4.6620 -4.1071 -6.0695 40 1 3.5423 0.2331 -6.7025 41 1 2.7256 1.2806 -4.6426 42 1 -0.0215 0.8371 2.6678 43 1 1.3754 1.5882 3.4758 44 1 1.2164 1.6792 1.7053 45 1 1.6082 -0.6860 4.4826 46 1 2.3179 -1.9574 3.4588 47 1 4.2307 -2.1727 6.5981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052421918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:52 Heat of formation + Delta-G solvation = -71.758065 kcal Electronic energy + Delta-G solvation = -28325.411936 eV Core-core repulsion = 24281.272450 eV Total energy + Delta-G solvation = -4044.139486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.64429 -39.74332 -38.75530 -36.61954 -36.00766 -34.86341 -32.85723 -31.74230 -31.43734 -30.41430 -28.59954 -27.67154 -26.19315 -25.91414 -24.37057 -23.04852 -22.42597 -21.84271 -20.37844 -18.80396 -18.30000 -17.43318 -16.69099 -16.50455 -16.01091 -15.93750 -15.71858 -15.52622 -15.26436 -14.84998 -14.54613 -14.20524 -13.95164 -13.84412 -13.50922 -13.35842 -13.09181 -12.92817 -12.70286 -12.58054 -12.41404 -12.37942 -12.28542 -12.09222 -12.01776 -11.61591 -11.34594 -11.16834 -11.01853 -10.88993 -10.61834 -10.51583 -10.38596 -10.19333 -10.14683 -9.62307 -9.23269 -8.84373 -8.42816 -7.69453 -7.68484 -6.03718 -4.08398 0.79604 1.28843 2.60502 2.65393 2.70038 3.31238 3.32804 3.38524 3.44585 3.76000 3.97320 4.45978 4.48374 4.51885 4.72205 4.78581 4.84178 4.87904 4.93941 5.09397 5.11430 5.18278 5.20348 5.20474 5.27409 5.30911 5.32460 5.39048 5.57857 5.70533 5.74935 5.86895 5.90174 5.91897 6.04575 6.12090 6.26741 6.31947 6.49428 6.59243 6.78364 7.02317 7.05270 7.42078 7.50376 7.90767 7.94414 8.22845 8.33784 8.88359 9.03612 9.56611 11.04382 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.002423 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.814725 B =11550.827982 C =12515.993290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.105 0.895 4 O -0.323 6.323 5 C 0.513 3.487 6 O -0.521 6.521 7 C -0.187 4.187 8 C -0.005 4.005 9 C -0.214 4.214 10 C 0.247 3.753 11 N -0.630 5.630 12 C 0.088 3.912 13 C 0.087 3.913 14 C -0.216 4.216 15 C -0.003 4.003 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.247 3.753 21 C -0.527 4.527 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 1.295 -26.816 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.012 3.988 3 H 0.123 0.877 4 O -0.239 6.239 5 C 0.359 3.641 6 O -0.411 6.411 7 C -0.190 4.190 8 C -0.024 4.024 9 C -0.236 4.236 10 C 0.142 3.858 11 N -0.339 5.339 12 C -0.055 4.055 13 C -0.055 4.055 14 C -0.238 4.238 15 C -0.022 4.022 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.330 5.330 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.566 4.566 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.956 0.852 -26.833 27.136 hybrid contribution 0.968 0.520 0.361 1.157 sum -2.989 1.372 -26.472 26.675 Atomic orbital electron populations 1.22272 0.92483 1.03943 1.03948 1.22593 0.95629 0.97649 0.82881 0.87719 1.86651 1.76815 1.40999 1.19391 1.21149 0.74019 0.84999 0.83906 1.90786 1.49776 1.16009 1.84571 1.18833 1.13457 0.94562 0.92166 1.21230 0.90133 0.93430 0.97596 1.20564 1.10311 1.00300 0.92442 1.18122 0.89598 0.92072 0.85994 1.46346 1.70149 1.07802 1.09613 1.21724 1.01267 0.95894 0.86572 1.21742 1.00761 0.79855 1.03189 1.20445 1.10819 0.93016 0.99527 1.20843 0.91296 0.99855 0.90171 1.19785 0.81103 0.85930 0.83840 1.90694 1.39620 1.23448 1.85785 1.48061 1.54090 1.23946 1.06914 1.21840 0.95333 0.86757 1.02821 1.19342 0.94268 0.93806 0.79772 1.21434 1.01029 1.22936 1.11228 0.92422 1.24929 0.98211 0.94883 0.96066 1.69929 1.38152 1.28043 1.17227 0.86486 0.84081 0.78343 0.78473 1.20618 1.21060 1.19860 0.91028 0.89397 0.91300 0.83955 0.85136 0.92958 0.91305 0.90923 0.92921 0.91291 0.90724 0.85215 0.84626 0.93146 0.90343 0.92310 0.94634 0.93647 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.28 37.16 0.34 -2.00 16 2 C 0.07 1.26 2.17 -27.88 -0.06 1.20 16 3 H 0.11 1.80 6.15 -51.93 -0.32 1.48 16 4 O -0.32 -5.87 8.66 -47.30 -0.41 -6.27 16 5 C 0.51 8.51 7.86 34.45 0.27 8.78 16 6 O -0.52 -9.22 15.60 -19.28 -0.30 -9.52 16 7 C -0.19 -2.60 5.88 -104.97 -0.62 -3.22 16 8 C 0.00 -0.06 9.58 -39.39 -0.38 -0.44 16 9 C -0.21 -2.25 9.16 -39.62 -0.36 -2.61 16 10 C 0.25 2.41 6.55 -83.86 -0.55 1.86 16 11 N -0.63 -4.66 3.39 -187.56 -0.64 -5.29 16 12 C 0.09 0.43 10.17 59.84 0.61 1.04 16 13 C 0.09 0.47 10.18 59.85 0.61 1.08 16 14 C -0.22 -2.10 9.16 -39.62 -0.36 -2.46 16 15 C 0.00 -0.03 9.56 -39.39 -0.38 -0.41 16 16 C 0.51 11.26 7.10 -10.99 -0.08 11.19 16 17 O -0.52 -13.78 16.09 -14.05 -0.23 -14.01 16 18 N -0.60 -12.96 2.86 -182.96 -0.52 -13.48 16 19 C 0.08 1.23 8.92 59.85 0.53 1.76 16 20 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 21 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 22 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 25 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.07 5.12 -51.93 -0.27 0.80 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.14 1.87 7.60 -52.49 -0.40 1.47 16 33 H 0.13 1.12 6.11 -52.49 -0.32 0.79 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 36 H 0.07 0.33 6.17 -51.93 -0.32 0.01 16 37 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 39 H 0.07 0.41 6.17 -51.93 -0.32 0.09 16 40 H 0.13 0.95 6.11 -52.49 -0.32 0.62 16 41 H 0.14 1.49 7.64 -52.48 -0.40 1.09 16 42 H 0.05 0.67 7.02 -51.93 -0.36 0.31 16 43 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 44 H 0.06 0.81 6.08 -51.93 -0.32 0.50 16 45 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 46 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -36.16 388.87 -8.03 -44.19 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.65 Total: -1.06 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.86 Total: 8.42 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.42 Total: -44.76 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.94 Total: -29.80 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.16 -8.03 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.568 kcal (2) G-P(sol) polarization free energy of solvation -36.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds