Wall clock time and date at job start Tue Mar 31 2020 18:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 O 1.45202 * 109.47243 * 240.00758 * 2 1 3 5 5 C 1.34753 * 117.00536 * 89.99501 * 4 2 1 6 6 O 1.21517 * 119.99744 * 0.02562 * 5 4 2 7 7 C 1.47384 * 120.00298 * 179.97438 * 5 4 2 8 8 C 1.39853 * 120.06911 * 359.72930 * 7 5 4 9 9 C 1.37112 * 119.91847 * 179.73894 * 8 7 5 10 10 C 1.39236 * 120.07629 * 0.51287 * 9 8 7 11 11 N 1.39019 * 119.92608 * 179.74084 * 10 9 8 12 12 C 1.46496 * 119.99817 * 180.02562 * 11 10 9 13 13 C 1.46505 * 119.99769 * 0.02562 * 11 10 9 14 14 C 1.39230 * 120.14909 * 359.75955 * 10 9 8 15 15 C 1.37108 * 120.07374 * 359.97438 * 14 10 9 16 16 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 17 17 O 1.21281 * 119.99422 * 114.99967 * 16 2 1 18 18 N 1.34769 * 120.00321 * 295.00799 * 16 2 1 19 19 C 1.46502 * 120.00154 * 359.97438 * 18 16 2 20 20 C 1.46499 * 119.99994 * 180.02562 * 18 16 2 21 21 C 1.50703 * 109.47449 * 89.99815 * 20 18 16 22 22 H 1.08002 * 119.99722 * 359.97438 * 21 20 18 23 23 C 1.37871 * 119.99952 * 180.02562 * 21 20 18 24 24 N 1.31508 * 120.00278 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99701 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47289 * 90.00146 * 25 23 21 27 27 H 1.48498 * 109.47104 * 209.99801 * 25 23 21 28 28 H 1.48499 * 109.47137 * 329.99741 * 25 23 21 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.07998 * 120.04020 * 359.97438 * 8 7 5 33 33 H 1.08000 * 119.96158 * 180.25721 * 9 8 7 34 34 H 1.09003 * 109.47001 * 90.00134 * 12 11 10 35 35 H 1.09001 * 109.46605 * 209.99678 * 12 11 10 36 36 H 1.09003 * 109.47181 * 329.99710 * 12 11 10 37 37 H 1.08998 * 109.46924 * 90.00136 * 13 11 10 38 38 H 1.08993 * 109.46768 * 209.99917 * 13 11 10 39 39 H 1.08996 * 109.47078 * 330.00179 * 13 11 10 40 40 H 1.08000 * 119.96710 * 179.97438 * 14 10 9 41 41 H 1.08004 * 120.03981 * 179.97438 * 15 14 10 42 42 H 1.08990 * 109.47314 * 89.99806 * 19 18 16 43 43 H 1.08998 * 109.47376 * 210.01109 * 19 18 16 44 44 H 1.09005 * 109.46677 * 330.00437 * 19 18 16 45 45 H 1.09007 * 109.46830 * 209.99384 * 20 18 16 46 46 H 1.08993 * 109.47505 * 329.99405 * 20 18 16 47 47 H 0.97003 * 120.00108 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6843 -1.1857 5 6 2.2180 0.0671 -2.2855 6 8 1.9977 1.2618 -2.2545 7 6 2.7091 -0.5597 -3.5257 8 6 2.9695 -1.9333 -3.5610 9 6 3.4213 -2.5142 -4.7180 10 6 3.6310 -1.7363 -5.8536 11 7 4.0942 -2.3276 -7.0234 12 6 4.3159 -1.5106 -8.2190 13 6 4.3606 -3.7677 -7.0604 14 6 3.3782 -0.3676 -5.8201 15 6 2.9211 0.2187 -4.6680 16 6 2.0324 -0.7104 1.2304 17 8 2.6530 -1.7466 1.1214 18 7 1.7919 -0.1943 2.4520 19 6 1.0425 1.0576 2.5837 20 6 2.2807 -0.8847 3.6480 21 6 3.6621 -0.3862 3.9866 22 1 4.1293 0.3690 3.3719 23 6 4.3297 -0.8950 5.0802 24 7 3.7611 -1.8150 5.8284 25 14 6.0422 -0.2776 5.4994 26 1 5.9383 0.8860 6.4162 27 1 6.8112 -1.3620 6.1611 28 1 6.7386 0.1340 4.2540 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.8113 -2.5365 -2.6792 33 1 3.6186 -3.5756 -4.7473 34 1 5.3397 -1.1364 -8.2186 35 1 4.1512 -2.1174 -9.1093 36 1 3.6219 -0.6701 -8.2186 37 1 3.4579 -4.2964 -7.3666 38 1 5.1600 -3.9711 -7.7729 39 1 4.6620 -4.1071 -6.0695 40 1 3.5423 0.2331 -6.7025 41 1 2.7256 1.2806 -4.6426 42 1 -0.0215 0.8371 2.6678 43 1 1.3754 1.5882 3.4758 44 1 1.2164 1.6792 1.7053 45 1 1.6082 -0.6860 4.4826 46 1 2.3179 -1.9574 3.4588 47 1 4.2307 -2.1727 6.5981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052421918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:51 Heat of formation + Delta-G solvation = -93.433814 kcal Electronic energy + Delta-G solvation = -28326.351867 eV Core-core repulsion = 24281.272450 eV Total energy + Delta-G solvation = -4045.079417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.90580 -40.83679 -40.17957 -37.68623 -37.03378 -36.69738 -34.90850 -33.11917 -32.32378 -31.30488 -29.59835 -29.07078 -27.67487 -26.80847 -25.92932 -24.53226 -23.26210 -23.08636 -21.41631 -20.42101 -19.40327 -18.71118 -18.41743 -18.01483 -17.41227 -17.14354 -16.94733 -16.60220 -16.40961 -16.04260 -15.89306 -15.63736 -14.87720 -14.86163 -14.66789 -14.59867 -14.29833 -14.16057 -13.75169 -13.60073 -13.50156 -13.45956 -13.36785 -13.25656 -13.02602 -12.94654 -12.89177 -12.82403 -12.59693 -12.51928 -12.23073 -11.90856 -11.79271 -11.73126 -11.63525 -10.94011 -10.65399 -10.61854 -10.09075 -9.52547 -8.38405 -8.24550 -6.39027 -0.17849 0.44768 1.30693 1.35792 1.38585 1.49108 1.53806 1.62569 2.10719 2.32443 2.45211 2.84330 3.05186 3.40978 3.61838 3.75065 3.83197 3.85925 3.90586 4.17582 4.30380 4.34903 4.35358 4.48185 4.50256 4.54238 4.61871 4.62614 4.68490 4.78364 4.86525 4.88690 4.91509 4.94844 5.06105 5.08592 5.14374 5.16236 5.20744 5.38923 5.44876 5.50700 5.66586 5.77555 6.02804 6.19531 6.35227 6.54475 6.69222 6.70381 7.19641 7.35094 8.82752 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.002423 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.814725 B =11550.827982 C =12515.993290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.079 3.921 3 H 0.113 0.887 4 O -0.342 6.342 5 C 0.510 3.490 6 O -0.539 6.539 7 C -0.219 4.219 8 C -0.015 4.015 9 C -0.218 4.218 10 C 0.252 3.748 11 N -0.626 5.626 12 C 0.079 3.921 13 C 0.079 3.921 14 C -0.212 4.212 15 C -0.003 4.003 16 C 0.500 3.500 17 O -0.578 6.578 18 N -0.599 5.599 19 C 0.068 3.932 20 C 0.260 3.740 21 C -0.547 4.547 22 H 0.050 0.950 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.967 3.033 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.277 1.277 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.159 0.841 41 H 0.140 0.860 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.035 0.965 46 H 0.001 0.999 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.994 2.525 -29.281 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.021 3.979 3 H 0.130 0.870 4 O -0.258 6.258 5 C 0.359 3.641 6 O -0.431 6.431 7 C -0.222 4.222 8 C -0.034 4.034 9 C -0.241 4.241 10 C 0.144 3.856 11 N -0.333 5.333 12 C -0.062 4.062 13 C -0.063 4.063 14 C -0.234 4.234 15 C -0.022 4.022 16 C 0.287 3.713 17 O -0.457 6.457 18 N -0.332 5.332 19 C -0.073 4.073 20 C 0.140 3.860 21 C -0.585 4.585 22 H 0.068 0.932 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.791 3.209 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.202 1.202 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.144 0.856 33 H 0.165 0.835 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.176 0.824 41 H 0.158 0.842 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.053 0.947 46 H 0.020 0.980 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.651 2.110 -29.335 29.637 hybrid contribution 0.898 0.047 0.956 1.312 sum -2.753 2.156 -28.379 28.594 Atomic orbital electron populations 1.22276 0.89245 1.04371 1.05809 1.22527 0.97862 0.96644 0.80914 0.86980 1.86661 1.77328 1.41874 1.19918 1.21646 0.73572 0.84893 0.84012 1.90748 1.51046 1.16501 1.84825 1.18859 1.16227 0.95274 0.91858 1.21154 0.91148 0.93099 0.98046 1.20712 1.10011 1.01274 0.92054 1.18267 0.88502 0.92202 0.86579 1.46691 1.68310 1.08919 1.09382 1.21968 1.01874 0.96290 0.86110 1.21943 1.01955 0.78715 1.03714 1.20708 1.09743 0.93304 0.99677 1.20946 0.91250 0.99946 0.90073 1.20623 0.80090 0.85418 0.85143 1.90652 1.42225 1.26109 1.86764 1.48048 1.54115 1.25370 1.05623 1.22193 0.96541 0.84531 1.04057 1.18852 0.93867 0.91819 0.81508 1.21676 1.02239 1.23101 1.11498 0.93191 1.25828 1.02371 0.94921 0.95854 1.70036 1.39876 1.28886 1.17660 0.85424 0.78779 0.78421 0.78239 1.18596 1.20376 1.20167 0.91372 0.87256 0.89563 0.85568 0.83496 0.92236 0.89251 0.90307 0.92015 0.89227 0.91084 0.82392 0.84245 0.89622 0.90569 0.89620 0.94740 0.98042 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 9.28 71.98 0.67 -3.57 16 2 C 0.08 2.81 2.17 29.85 0.06 2.87 16 3 H 0.11 3.81 6.15 -2.39 -0.01 3.79 16 4 O -0.34 -12.92 8.66 -50.26 -0.44 -13.35 16 5 C 0.51 17.42 7.86 70.23 0.55 17.97 16 6 O -0.54 -19.20 15.60 19.78 0.31 -18.89 16 7 C -0.22 -6.25 5.88 -20.09 -0.12 -6.37 16 8 C -0.02 -0.40 9.58 22.40 0.21 -0.19 16 9 C -0.22 -4.47 9.16 22.24 0.20 -4.27 16 10 C 0.25 4.45 6.55 38.48 0.25 4.70 16 11 N -0.63 -7.44 3.39 -747.30 -2.53 -9.97 16 12 C 0.08 0.50 10.17 127.77 1.30 1.80 16 13 C 0.08 0.63 10.18 127.77 1.30 1.93 16 14 C -0.21 -3.71 9.16 22.24 0.20 -3.51 16 15 C 0.00 -0.07 9.56 22.40 0.21 0.15 16 16 C 0.50 22.93 7.10 87.66 0.62 23.56 16 17 O -0.58 -32.53 16.09 15.72 0.25 -32.28 16 18 N -0.60 -26.55 2.86 -851.15 -2.43 -28.98 16 19 C 0.07 2.10 8.92 127.77 1.14 3.24 16 20 C 0.26 14.32 5.16 85.63 0.44 14.76 16 21 C -0.55 -32.31 9.39 25.60 0.24 -32.07 16 22 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 23 C 0.01 0.56 5.46 84.65 0.46 1.02 16 24 N -0.93 -56.38 13.29 21.44 0.28 -56.09 16 25 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 26 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.11 2.38 5.12 -2.39 -0.01 2.36 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.13 3.63 7.60 -2.91 -0.02 3.61 16 33 H 0.15 2.40 6.11 -2.91 -0.02 2.38 16 34 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.09 0.24 8.07 -2.39 -0.02 0.22 16 36 H 0.08 0.42 6.17 -2.39 -0.01 0.41 16 37 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.09 0.38 8.07 -2.39 -0.02 0.36 16 39 H 0.07 0.64 6.17 -2.39 -0.01 0.62 16 40 H 0.16 1.79 6.11 -2.91 -0.02 1.78 16 41 H 0.14 2.99 7.64 -2.91 -0.02 2.97 16 42 H 0.09 2.06 7.02 -2.39 -0.02 2.04 16 43 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 44 H 0.09 2.19 6.08 -2.38 -0.01 2.17 16 45 H 0.03 1.88 8.07 -2.38 -0.02 1.86 16 46 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 47 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -82.26 388.87 6.22 -76.04 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.99 Total: 13.63 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 7.76 Total: 22.01 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -4.68 Total: -95.05 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: 0.13 Total: -64.52 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -82.26 6.22 -76.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.390 kcal (2) G-P(sol) polarization free energy of solvation -82.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds