Wall clock time and date at job start Tue Mar 31 2020 18:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46918 * 2 1 4 4 O 1.45197 * 109.47361 * 120.00254 * 2 1 3 5 5 C 1.34760 * 117.00062 * 270.00459 * 4 2 1 6 6 O 1.21510 * 119.99915 * 359.97438 * 5 4 2 7 7 C 1.47380 * 119.99779 * 179.97438 * 5 4 2 8 8 C 1.39855 * 120.06988 * 179.97438 * 7 5 4 9 9 C 1.37116 * 119.92248 * 180.27370 * 8 7 5 10 10 C 1.39240 * 120.07112 * 359.50056 * 9 8 7 11 11 N 1.39014 * 119.92376 * 180.23200 * 10 9 8 12 12 C 1.46495 * 120.00118 * 185.83360 * 11 10 9 13 13 C 1.46497 * 119.99786 * 5.83439 * 11 10 9 14 14 C 1.39233 * 120.14916 * 0.50005 * 10 9 8 15 15 C 1.37105 * 120.07854 * 359.75519 * 14 10 9 16 16 C 1.50705 * 109.47162 * 240.00504 * 2 1 3 17 17 O 1.21282 * 119.99841 * 248.67684 * 16 2 1 18 18 N 1.34778 * 119.99999 * 68.67547 * 16 2 1 19 19 C 1.46504 * 120.00054 * 4.56783 * 18 16 2 20 20 C 1.46492 * 120.00226 * 184.56827 * 18 16 2 21 21 C 1.50702 * 109.47345 * 89.99820 * 20 18 16 22 22 H 1.07997 * 119.99795 * 0.02562 * 21 20 18 23 23 C 1.37879 * 119.99771 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99664 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00397 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47022 * 89.99659 * 25 23 21 27 27 H 1.48500 * 109.46801 * 209.99522 * 25 23 21 28 28 H 1.48499 * 109.46631 * 329.99422 * 25 23 21 29 29 H 1.08990 * 109.47216 * 306.12738 * 1 2 3 30 30 H 1.08996 * 109.47315 * 66.13012 * 1 2 3 31 31 H 1.09002 * 109.47134 * 186.12712 * 1 2 3 32 32 H 1.08002 * 120.04205 * 0.02562 * 8 7 5 33 33 H 1.07996 * 119.96017 * 179.74436 * 9 8 7 34 34 H 1.09000 * 109.46884 * 90.00060 * 12 11 10 35 35 H 1.08994 * 109.47558 * 209.99772 * 12 11 10 36 36 H 1.08997 * 109.47001 * 330.00459 * 12 11 10 37 37 H 1.08999 * 109.47412 * 5.45607 * 13 11 10 38 38 H 1.09003 * 109.47419 * 125.46329 * 13 11 10 39 39 H 1.09004 * 109.47297 * 245.45886 * 13 11 10 40 40 H 1.08008 * 119.96163 * 179.72595 * 14 10 9 41 41 H 1.07996 * 120.04118 * 179.97438 * 15 14 10 42 42 H 1.09000 * 109.47080 * 86.07951 * 19 18 16 43 43 H 1.08994 * 109.46990 * 206.08164 * 19 18 16 44 44 H 1.09006 * 109.47062 * 326.08373 * 19 18 16 45 45 H 1.09002 * 109.47518 * 210.00084 * 20 18 16 46 46 H 1.09011 * 109.46836 * 329.99929 * 20 18 16 47 47 H 0.96999 * 120.00176 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2179 0.0669 2.2854 6 8 1.9977 1.2614 2.2546 7 6 2.7080 -0.5603 3.5258 8 6 2.9206 0.2181 4.6681 9 6 3.3820 -0.3676 5.8188 10 6 3.6289 -1.7375 5.8539 11 7 4.0920 -2.3289 7.0236 12 6 4.4738 -3.7432 7.0278 13 6 4.1983 -1.5378 8.2520 14 6 3.4183 -2.5153 4.7185 15 6 2.9620 -1.9352 3.5630 16 6 2.0324 -0.7103 -1.2306 17 8 2.5946 -1.7799 -1.1263 18 7 1.8568 -0.1570 -2.4469 19 6 1.2682 1.1793 -2.5658 20 6 2.2545 -0.8918 -3.6502 21 6 1.0950 -1.7213 -4.1385 22 1 0.1556 -1.7027 -3.6060 23 6 1.2331 -2.5032 -5.2658 24 7 0.2214 -3.2275 -5.6916 25 14 2.8577 -2.5349 -6.1872 26 1 3.7181 -3.6129 -5.6367 27 1 2.6046 -2.7908 -7.6280 28 1 3.5418 -1.2263 -6.0295 29 1 -0.3633 0.6058 0.8300 30 1 -0.3634 0.4158 -0.9397 31 1 -0.3633 -1.0218 0.1097 32 1 2.7255 1.2800 4.6427 33 1 3.5503 0.2336 6.7000 34 1 5.5310 -3.8349 6.7788 35 1 4.2958 -4.1647 8.0171 36 1 3.8789 -4.2824 6.2907 37 1 3.7824 -0.5448 8.0818 38 1 3.6451 -2.0314 9.0511 39 1 5.2465 -1.4487 8.5373 40 1 3.6150 -3.5769 4.7478 41 1 2.7992 -2.5390 2.6826 42 1 2.0517 1.9312 -2.4707 43 1 0.7855 1.2785 -3.5379 44 1 0.5297 1.3225 -1.7769 45 1 2.5485 -0.1856 -4.4267 46 1 3.0953 -1.5449 -3.4159 47 1 0.3186 -3.7779 -6.4844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052421919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:55 Heat of formation + Delta-G solvation = -62.111711 kcal Electronic energy + Delta-G solvation = -28324.433982 eV Core-core repulsion = 24280.712793 eV Total energy + Delta-G solvation = -4043.721189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.69458 -39.80117 -38.85577 -36.65822 -36.05555 -34.97637 -32.78527 -31.82919 -31.51391 -30.46435 -28.62409 -28.29712 -26.27825 -25.96964 -24.33604 -22.93129 -22.45348 -21.72122 -20.38822 -18.82925 -18.36781 -17.46240 -16.95686 -16.75160 -16.07171 -15.97715 -15.78259 -15.56136 -15.29499 -14.89771 -14.65468 -14.18834 -14.02332 -13.97137 -13.68283 -13.24963 -13.04289 -12.96444 -12.80514 -12.52269 -12.43825 -12.41207 -12.31586 -12.25160 -12.15885 -11.76508 -11.45643 -11.29489 -11.03063 -10.85896 -10.62636 -10.50029 -10.42191 -10.23326 -10.14565 -9.54591 -9.27106 -8.96793 -8.59155 -7.74921 -7.71735 -6.09131 -4.08301 0.75527 1.25209 2.56650 2.61130 2.65750 3.21535 3.30030 3.36001 3.38107 3.71539 3.87695 4.39663 4.41242 4.46427 4.73420 4.76213 4.82116 4.85485 4.90829 5.07276 5.09923 5.13347 5.16728 5.17228 5.24482 5.26402 5.31408 5.35720 5.47416 5.74999 5.78429 5.83415 5.85004 5.88669 6.05122 6.11874 6.28238 6.33205 6.45860 6.53575 6.68981 6.75506 6.92953 7.02625 7.28031 7.59148 7.87474 8.15466 8.45362 8.85832 8.94668 9.50719 11.04008 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002314 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.525411 B =12098.847045 C =13030.673779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.074 3.926 3 H 0.104 0.896 4 O -0.323 6.323 5 C 0.513 3.487 6 O -0.521 6.521 7 C -0.188 4.188 8 C -0.002 4.002 9 C -0.218 4.218 10 C 0.248 3.752 11 N -0.630 5.630 12 C 0.087 3.913 13 C 0.085 3.915 14 C -0.214 4.214 15 C -0.004 4.004 16 C 0.513 3.487 17 O -0.520 6.520 18 N -0.592 5.592 19 C 0.067 3.933 20 C 0.216 3.784 21 C -0.531 4.531 22 H 0.076 0.924 23 C 0.072 3.928 24 N -0.896 5.896 25 Si 0.876 3.124 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.266 1.266 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.132 0.868 41 H 0.143 0.857 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.033 0.967 46 H 0.039 0.961 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 6.179 26.940 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 H 0.121 0.879 4 O -0.238 6.238 5 C 0.359 3.641 6 O -0.412 6.412 7 C -0.191 4.191 8 C -0.021 4.021 9 C -0.240 4.240 10 C 0.143 3.857 11 N -0.339 5.339 12 C -0.056 4.056 13 C -0.058 4.058 14 C -0.237 4.237 15 C -0.023 4.023 16 C 0.298 3.702 17 O -0.396 6.396 18 N -0.326 5.326 19 C -0.076 4.076 20 C 0.096 3.904 21 C -0.569 4.569 22 H 0.094 0.906 23 C -0.130 4.130 24 N -0.534 5.534 25 Si 0.703 3.297 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.190 1.190 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.594 5.713 26.972 28.348 hybrid contribution 0.645 0.004 -0.632 0.903 sum 7.239 5.716 26.340 27.909 Atomic orbital electron populations 1.22297 0.92105 1.04366 1.03986 1.22551 0.96000 0.97298 0.82605 0.87858 1.86672 1.76777 1.40982 1.19419 1.21154 0.73999 0.84992 0.83921 1.90784 1.49774 1.16026 1.84567 1.18832 1.13563 0.94575 0.92154 1.20842 0.91253 0.99879 0.90141 1.20487 1.11026 0.92880 0.99620 1.18132 0.89394 0.91976 0.86153 1.46330 1.69303 1.10418 1.07857 1.21734 1.00284 0.80696 1.02860 1.21787 1.01521 0.96744 0.85744 1.20578 1.10270 1.00174 0.92636 1.21244 0.90020 0.93434 0.97649 1.19812 0.80575 0.86031 0.83829 1.90685 1.41726 1.21357 1.85823 1.47714 1.61264 1.17304 1.06281 1.22007 0.97992 0.83676 1.03970 1.19728 0.97220 0.92230 0.81234 1.21322 0.98735 1.25700 1.11150 0.90625 1.24854 0.96508 0.94724 0.96914 1.69894 1.30847 1.28202 1.24503 0.86847 0.84411 0.79261 0.79164 1.19859 1.21056 1.19038 0.91176 0.89008 0.90551 0.84611 0.85072 0.92874 0.91302 0.90712 0.90072 0.92235 0.92657 0.85075 0.83915 0.93321 0.89981 0.91291 0.94897 0.94320 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 9.16 37.16 0.34 -2.22 16 2 C 0.07 1.29 2.17 -27.88 -0.06 1.23 16 3 H 0.10 1.65 6.73 -51.93 -0.35 1.30 16 4 O -0.32 -5.73 8.67 -47.29 -0.41 -6.14 16 5 C 0.51 8.19 7.86 34.45 0.27 8.46 16 6 O -0.52 -8.83 15.59 -19.27 -0.30 -9.13 16 7 C -0.19 -2.52 5.88 -104.96 -0.62 -3.13 16 8 C 0.00 -0.02 9.56 -39.38 -0.38 -0.40 16 9 C -0.22 -2.01 9.22 -39.62 -0.37 -2.38 16 10 C 0.25 2.33 6.54 -83.86 -0.55 1.78 16 11 N -0.63 -4.50 3.39 -187.56 -0.64 -5.13 16 12 C 0.09 0.46 10.34 59.84 0.62 1.07 16 13 C 0.08 0.40 10.58 59.85 0.63 1.03 16 14 C -0.21 -2.19 9.20 -39.62 -0.36 -2.55 16 15 C 0.00 -0.05 9.58 -39.39 -0.38 -0.43 16 16 C 0.51 11.07 7.03 -10.98 -0.08 10.99 16 17 O -0.52 -13.37 16.08 -13.94 -0.22 -13.59 16 18 N -0.59 -12.48 2.86 -182.95 -0.52 -13.01 16 19 C 0.07 1.05 9.81 59.85 0.59 1.64 16 20 C 0.22 5.33 4.25 -5.20 -0.02 5.31 16 21 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 22 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 23 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 24 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 25 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.30 5.45 -51.93 -0.28 1.02 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.14 1.41 7.64 -52.49 -0.40 1.01 16 33 H 0.13 0.88 5.81 -52.49 -0.30 0.58 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 36 H 0.07 0.39 5.97 -51.93 -0.31 0.08 16 37 H 0.08 0.34 5.37 -51.93 -0.28 0.06 16 38 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.13 1.09 6.00 -52.48 -0.32 0.77 16 41 H 0.14 1.83 7.60 -52.49 -0.40 1.43 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 44 H 0.07 0.92 4.30 -51.93 -0.22 0.70 16 45 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 46 H 0.04 1.02 6.79 -51.92 -0.35 0.67 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -36.43 385.47 -7.53 -43.96 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.55 Total: 0.21 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.80 Total: 6.86 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.38 Total: -44.90 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.93 Total: -28.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.43 -7.53 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.150 kcal (2) G-P(sol) polarization free energy of solvation -36.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds